BAC Information

Click to search

BAC

Clone NameB6Ng01-039P16
Chromosome12 (Build37)
Map Location 79,311,489 - 79,432,063
singlet/doubletdoublet
Overlap geneGphn
Upstream geneFut8, LOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-039P16.bB6Ng01-039P16.g
ACCDH867087DH867088
length1,039993
definitionDH867087|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P16, 5' end.DH867088|Mus musculus domesticus DNA, BAC clone: B6Ng01-039P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,431,531 - 79,432,063)(79,311,489 - 79,312,485)
sequence
gaattcactgtgcttccccagttgtgacatattatttattgtaatactaa
agctaggccatcctctgctacatatgcagctggagccatgggtccctcca
tgtgttgtacactattgttaactagcatacaaacatcaattttcaccaat
atttgtatgtatatgtatgtattgatttagtttgcttcaatgcaatttat
atcatgtttaactactaccaagatacacaataacttcaaaactaacccga
gggtagaaacaatgctctcattattactctctgtattatatacctatact
atctagtcctcatggcaatcacttatctgttcttcattctaacgggtttt
gcttgtttgcttacttgcttgcttgcttttggggatgtaaaaatggaatc
acaggctatgtaactttttgaagttaattttctttattgtatgcctaccc
tgtactttacatctattattacaaaagtacaacactctccagccaaggaa
gcaagtaggctaattacaggacttcacctcttccttcaccattaccaaat
aaatccctcagtctcatccccatctctaaggaaaaacaccagctacagct
tcacacacacctcaaccccagtgatcacacagatcttcacacacacacac
acacacacacacacacacacacacacacacacacaccacaatttgcttta
ccccaggcaccaaatacagcaggcatttcctgggaacccacaggctacct
ccgccagagaaacaggtagacagctatagatcttcacctctcccctatac
ccagctctaaaggcaggcctcctgctttctgcagcctctccacactctct
gcccttattcccagaggactaagtagatcctgctgggacactctgctttc
tttccttttgtgaacccactcagcctcgcccctcctatcccatccctact
actcagtaattagctcccaatacctaaaacatatttcctggagtcccagt
gaccacaccatataatgatcctagaaaagaaaattctac
gaattccttaatgaattatattgcaattatcgatttacccagatctctct
cacaccatatgatgaactctttaagacacagaactatgtcttgttcatct
tttcattttaacgaatttatatggtgcctaggatttaacagaagtttatt
aaatgacattgcacaaggatttgttatggcttaaatatgaagtggtcccc
aaagttcaagtgcaaatgagcccatagccagtggcccatagcgagtagcg
ctattttgggagatgcacataggggcctagctgtaagtaataagccctat
gatatgtgcctttgaaggtacctctctctactttttgtttgccattaaag
gcaaagaaattatacacacttctgctgctttccaaagttcatggggccaa
gtgaccaagttgttccctcaagtattttggttaaaataaacaaaagtaat
aaaaaatagtattttcctggtaataagctaagtaagccaattcatttttc
ttattcactgaggtgaaaactaaaattttaaaatgcattttatttttttt
aaatgacttttaagttattttaattatgtatttcatgggagggggtaggt
catgcacttgaatgctcgtgctggtgtctgcaggaaacagaggcattata
ttcccgtggagttgtagccccagttatgaaccatctgatgtgggtgttgg
gaaccgaacttaggctccctctcaaagagtagtgtgaacttagtgcccct
ctccagccacctttaaaacgttacaggtaaccaataactgctgaaaggag
ttagggataaatccccatactgggttgtccaatgtagattggtcagctgt
gaaacatatatacacagacaacaaaaacagactcagtaggatttatgttg
tgcatatagatacacacatatatgtattttaacatattcaaagaaagaga
ttatcagcttgagagtggggagacatagatggggttggaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79431531_79432063
seq2: B6Ng01-039P16.b_43_575 (reverse)

seq1  GAAGAGGTGAAGTCCTGTAATTAGCCTACTTGCTTCCTTGGCTGGAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTGAAGTCCTGTAATTAGCCTACTTGCTTCCTTGGCTGGAGAGT  50

seq1  GTTGTACTTTTGTAATAATAGATGTAAAGTACAGGGTAGGCATACAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACTTTTGTAATAATAGATGTAAAGTACAGGGTAGGCATACAATAA  100

seq1  AGAAAATTAACTTCAAAAAGTTACATAGCCTGTGATTCCATTTTTACATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAACTTCAAAAAGTTACATAGCCTGTGATTCCATTTTTACATC  150

seq1  CCCAAAAGCAAGCAAGCAAGTAAGCAAACAAGCAAAACCCGTTAGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAAGCAAGCAAGCAAGTAAGCAAACAAGCAAAACCCGTTAGAATGA  200

seq1  AGAACAGATAAGTGATTGCCATGAGGACTAGATAGTATAGGTATATAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAGATAAGTGATTGCCATGAGGACTAGATAGTATAGGTATATAATA  250

seq1  CAGAGAGTAATAATGAGAGCATTGTTTCTACCCTCGGGTTAGTTTTGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGTAATAATGAGAGCATTGTTTCTACCCTCGGGTTAGTTTTGAAG  300

seq1  TTATTGTGTATCTTGGTAGTAGTTAAACATGATATAAATTGCATTGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGTATCTTGGTAGTAGTTAAACATGATATAAATTGCATTGAAGC  350

seq1  AAACTAAATCAATACATACATATACATACAAATATTGGTGAAAATTGATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAAATCAATACATACATATACATACAAATATTGGTGAAAATTGATG  400

seq1  TTTGTATGCTAGTTAACAATAGTGTACAACACATGGAGGGACCCATGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGCTAGTTAACAATAGTGTACAACACATGGAGGGACCCATGGCT  450

seq1  CCAGCTGCATATGTAGCAGAGGATGGCCTAGCTTTAGTATTACAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCATATGTAGCAGAGGATGGCCTAGCTTTAGTATTACAATAAAT  500

seq1  AATATGTCACAACTGGGGAAGCACAGTGAATTC  533
      |||||||||||||||||||||||||||||||||
seq2  AATATGTCACAACTGGGGAAGCACAGTGAATTC  533

seq1: chr12_79311489_79312485
seq2: B6Ng01-039P16.g_69_1061

seq1  GAATTCCTTAATGAATTATATTGCAATTATCGATTTACCCAGATCTCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAATGAATTATATTGCAATTATCGATTTACCCAGATCTCTCT  50

seq1  CACACCATATGATGAACTCTTTAAGACACAGAACTATGTCTTGTTCATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCATATGATGAACTCTTTAAGACACAGAACTATGTCTTGTTCATCT  100

seq1  TTTCATTTTAACGAATTTATATGGTGCCTAGGATTTAACAGAAGTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTTTAACGAATTTATATGGTGCCTAGGATTTAACAGAAGTTTATT  150

seq1  AAATGACATTGCACAAGGATTTGTTATGGCTTAAATATGAAGTGGTCCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACATTGCACAAGGATTTGTTATGGCTTAAATATGAAGTGGTCCCC  200

seq1  AAAGTTCAAGTGCAAATGAGCCCATAGCCAGTGGCCCATAGCGAGTAGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAAGTGCAAATGAGCCCATAGCCAGTGGCCCATAGCGAGTAGCG  250

seq1  CTATTTTGGGAGATGCACATAGGGGCCTAGCTGTAAGTAATAAGCCCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTTGGGAGATGCACATAGGGGCCTAGCTGTAAGTAATAAGCCCTAT  300

seq1  GATATGTGCCTTTGAAGGTACCTCTCTCTACTTTTTGTTTGCCATTAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTGCCTTTGAAGGTACCTCTCTCTACTTTTTGTTTGCCATTAAAG  350

seq1  GCAAAGAAATTATACACACTTCTGCTGCTTTCCAAAGTTCATGGGGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAATTATACACACTTCTGCTGCTTTCCAAAGTTCATGGGGCCAA  400

seq1  GTGACCAAGTTGTTCCCTCAAGTATTTTGGTTAAAATAAACAAAAGTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCAAGTTGTTCCCTCAAGTATTTTGGTTAAAATAAACAAAAGTAAT  450

seq1  AAAAAATAGTATTTTCCTGGTAATAAGCTAAGTAAGCCAATTCATTTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATAGTATTTTCCTGGTAATAAGCTAAGTAAGCCAATTCATTTTTC  500

seq1  TTATTCACTGAGGTGAAAACTAAAATTTTAAAATGCATTTTATTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCACTGAGGTGAAAACTAAAATTTTAAAATGCATTTTATTTTTTTT  550

seq1  AAATGACTTTTAAGTTATTTTAATTATGTATTTCATGGGAGGGGGTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACTTTTAAGTTATTTTAATTATGTATTTCATGGGAGGGGGTAGGT  600

seq1  CATGCACTTGAATGCTCGTGCTGGTGTCTGCAGGAAACAGAGGCATTATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACTTGAATGCTCGTGCTGGTGTCTGCAGGAAACAGAGGCATTATA  650

seq1  TTCCCGTGGAGTTGTAGCCCCAGTTATGAACCATCTGATGTGGGTGTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCGTGGAGTTGTAGCCCCAGTTATGAACCATCTGATGTGGGTGTTGG  700

seq1  GAACCGAACTTAGGCTCCCTCTCAAAGAGTAGTGTGAACTTAGTGCCCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCGAACTTAGGCTCCCTCTCAAAGAGTAGTGTGAACTTAGTGCCCCT  750

seq1  CTCCAGCCACCTTTAAAACGTTACAGGTAACCAATAACTGCTGAAAGGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGCCACCTTTAAAACGTTACAGGTAACCAATAACTGCTGAAAGGAG  800

seq1  TTAGGGATAAATCCCCATACT-GGTTGTCCAATGTAGATTGGTCAGCTGT  849
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTAGGGATAAATCCCCATACTGGGTTGTCCAATGTAGATTGGTCAGCTGT  850

seq1  GAAACAATATATACACAGACAACAAAAACAGACTCAGTAGGATTTATGTT  899
      ||||| |||||||||||||||||||||||||||||||||||||||||| |
seq2  GAAAC-ATATATACACAGACAACAAAAACAGACTCAGTAGGATTTATG-T  898

seq1  TGTGCATATAGATACACACATATATGTATTTTAACAATATTCAAAGAAAA  949
      ||||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  TGTGCATATAGATACACACATATATGTATTTTAAC-ATATTCAAAG-AAA  946

seq1  GAGATTATCAGCTTGAGAGTGGGGGAGACATAGATGGGGTTGGAAGGA  997
      |||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAGATTATCAGCTTGAGAGT-GGGGAGACATAGATGGGGTTGGAAGGA  993