BAC Information

Click to search

BAC

Clone NameB6Ng01-040F24
Chromosome12 (Build37)4 (Build37)
Map Location 91,507,403 - 91,508,49498,627,892 - 98,627,928
singlet/doubletsingletsinglet
Overlap geneNrxn3
Upstream genenone
Downstream geneLOC100039498, LOC100039287, Dio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040F24.bB6Ng01-040F24.g
ACCDH867365DH867366
length1,084229
definitionDH867365|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F24, 5' end.DH867366|Mus musculus domesticus DNA, BAC clone: B6Ng01-040F24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,507,403 - 91,508,494)(98,627,892 - 98,627,928)
sequence
gaattctgctttatgtttgcaaagtgcttccccactgtaccagtgactcc
ctgttcacacattcagcaatcctcttctgagctaaagtatgaactaggca
aagtcaaaaggtgtgaggatgtttctaattagatagataagcatctggaa
taaatatttttagagagtaatacaaattaaagaaaggtatatgctgtaaa
gtgataccttcatcccattctcatgaatggtcagaaagaactcatagagt
tggtagtctgaggccttatggctttgactggacaataaaatattatcaga
caggggtaggaacagatagtctaggtgaaggctaccaactcatattgaga
aagaggaaagttaaaatgagagaatcagaggagagtaatgtttgattgca
acagagtacaaatgtggactctgttgtgtagtgagatgaaaaatatcatc
tatataaatgcctattgccttatttatttatttatttatttacctattta
tgttttactattttattgggttcttatatctctacctcccttccaaccca
tttttaaccctaatcccttccaatcccccaacactagttgaagaaaaagg
ttagcagaaaagggggtttagagctctttcagccaacaaaatagactatt
tcctgctgattatgcctcttggggcaagtccagtctccactgtgattata
tccagcagtccatcaaagtcaacagcagcagggggttaacggtgggtaat
agtaggggagagcaccagtcaccacagacccactgtgggctctctcattt
atattctctctagagtccccagaattaaactatctgcagctggctaaaac
cacagctccctctagagcatgagataatcatagttaacatctgtagaaaa
ctgaagcaacccatatgccacacctgagataaaatgcaaacctatttata
taacataactgggtgggtttttcttttaaagaaacaaaactcccactccc
tcatgcttatcatcatcagtcaacaatcatccatcacctcttataacccg
cttgttccacctctctatctaccaataacatttg
tgagagcaggatacatagtcatccccagaaaagagcacgccaattagtaa
tccaatattaaatgagcatccctaaaaacatacatacaagtaacatacag
acggagcagcttgtacttatgtgtttaagaaactatgcatgattctaaca
gcaattattgaataaaggcaggaatttgaaaaagaggaaggagggatata
atatgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_91507403_91508494
seq2: B6Ng01-040F24.b_43_1126 (reverse)

seq1  CAAATGTTATATGGTAGATAGAGAGGTGGAAAGAGAGGTTTATAGAGAGG  50
      |||||||||| ||||||||||||||||||||  || || ||||| |||||
seq2  CAAATGTTAT-TGGTAGATAGAGAGGTGGAACAAGCGGGTTATA-AGAGG  48

seq1  TGATGGATTGATTGTTGACTGATGATGATTAAGCATGAGGGAGTGGGAGT  100
      ||||||| |||||||||||||||||||| |||||||||||||||||||| 
seq2  TGATGGA-TGATTGTTGACTGATGATGA-TAAGCATGAGGGAGTGGGAG-  95

seq1  TTTTGTTTCTTTAAAAAGAAAAACCAACCCAGTTATGTTATATAAATAGG  150
      |||||||||||| |||||||||||| ||||||||||||||||||||||||
seq2  TTTTGTTTCTTT-AAAAGAAAAACCCACCCAGTTATGTTATATAAATAGG  144

seq1  TTTGCATTTTAATCTCAGGTGTGGCATATGGGGTTGCTTCAGTTTGTCTA  200
      |||||||||| |||||||||||||||||| ||||||||||||||| ||||
seq2  TTTGCATTTT-ATCTCAGGTGTGGCATAT-GGGTTGCTTCAGTTT-TCTA  191

seq1  CAGATGTTAACTATGATTATCTCATGCTCTAGAGGG-GCTGTGGTTTTAG  249
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CAGATGTTAACTATGATTATCTCATGCTCTAGAGGGAGCTGTGGTTTTAG  241

seq1  CCAGCTGCAGATAGTTTAATTCTGGGGACTCTAGAGAGAATATAAATGAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGCAGATAGTTTAATTCTGGGGACTCTAGAGAGAATATAAATGAG  291

seq1  AGAGCCCACAGTGGGTCTGTGGTGACTGGTGCTCTCCCCTACTATTACCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCCACAGTGGGTCTGTGGTGACTGGTGCTCTCCCCTACTATTACCC  341

seq1  ACCGTTAACCCCCTGCTGCTGTTGACTTTGATGGACTGCTGGATATAATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTTAACCCCCTGCTGCTGTTGACTTTGATGGACTGCTGGATATAATC  391

seq1  ACAGTGGAGACTGGACTTGCCCCAAGAGGCATAATCAGCAGGAAATAGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGGAGACTGGACTTGCCCCAAGAGGCATAATCAGCAGGAAATAGTC  441

seq1  TATTTTGTTGGCTGAAAGAGCTCTAAACCCCCTTTTCTGCTAACCTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTTGGCTGAAAGAGCTCTAAACCCCCTTTTCTGCTAACCTTTTT  491

seq1  CTTCAACTAGTGTTGGGGGATTGGAAGGGATTAGGGTTAAAAATGGGTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAACTAGTGTTGGGGGATTGGAAGGGATTAGGGTTAAAAATGGGTTG  541

seq1  GAAGGGAGGTAGAGATATAAGAACCCAATAAAATAGTAAAACATAAATAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAGGTAGAGATATAAGAACCCAATAAAATAGTAAAACATAAATAG  591

seq1  GTAAATAAATAAATAAATAAATAAGGCAATAGGCATTTATATAGATGATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAAATAAATAAATAAATAAGGCAATAGGCATTTATATAGATGATA  641

seq1  TTTTTCATCTCACTACACAACAGAGTCCACATTTGTACTCTGTTGCAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATCTCACTACACAACAGAGTCCACATTTGTACTCTGTTGCAATC  691

seq1  AAACATTACTCTCCTCTGATTCTCTCATTTTAACTTTCCTCTTTCTCAAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTACTCTCCTCTGATTCTCTCATTTTAACTTTCCTCTTTCTCAAT  741

seq1  ATGAGTTGGTAGCCTTCACCTAGACTATCTGTTCCTACCCCTGTCTGATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTGGTAGCCTTCACCTAGACTATCTGTTCCTACCCCTGTCTGATA  791

seq1  ATATTTTATTGTCCAGTCAAAGCCATAAGGCCTCAGACTACCAACTCTAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTATTGTCCAGTCAAAGCCATAAGGCCTCAGACTACCAACTCTAT  841

seq1  GAGTTCTTTCTGACCATTCATGAGAATGGGATGAAGGTATCACTTTACAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCTTTCTGACCATTCATGAGAATGGGATGAAGGTATCACTTTACAG  891

seq1  CATATACCTTTCTTTAATTTGTATTACTCTCTAAAAATATTTATTCCAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATACCTTTCTTTAATTTGTATTACTCTCTAAAAATATTTATTCCAGA  941

seq1  TGCTTATCTATCTAATTAGAAACATCCTCACACCTTTTGACTTTGCCTAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATCTATCTAATTAGAAACATCCTCACACCTTTTGACTTTGCCTAG  991

seq1  TTCATACTTTAGCTCAGAAGAGGATTGCTGAATGTGTGAACAGGGAGTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACTTTAGCTCAGAAGAGGATTGCTGAATGTGTGAACAGGGAGTCA  1041

seq1  CTGGTACAGTGGGGAAGCACTTTGCAAACATAAAGCAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTACAGTGGGGAAGCACTTTGCAAACATAAAGCAGAATTC  1084

seq1: chr4_98627892_98627928
seq2: B6Ng01-040F24.g_269_301 (reverse)

seq1  CACACACACACACACACACACACACATCTCTATTATA  37
      ||||||||||||||||||||||||||    |||||||
seq2  CACACACACACACACACACACACACA----TATTATA  33