BAC Information

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BAC

Clone NameB6Ng01-040O09
Chromosome12 (Build37)
Map Location 105,517,812 - 105,653,629
singlet/doubletdoublet
Overlap geneEG238395, Serpina3k, EG628916, Serpina3m, Serpina3n
Upstream geneEG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900
Downstream geneGsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-040O09.bB6Ng01-040O09.g
ACCDH867725DH867726
length675491
definitionDH867725|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O09, 5' end.DH867726|Mus musculus domesticus DNA, BAC clone: B6Ng01-040O09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,517,812 - 105,518,485)(105,653,139 - 105,653,629)
sequence
gaattcttttataagttggagatgtttcctttactcttgaaacagttttc
taagggaggctgattttttgggaaagctgagctttggccttgatggtata
attatcatcaattgaatcaagaaccttggcacaagatggaggggcagaaa
cacaagaaggctgcccattaggattgtgatatctagctaccttgtcctct
agggaagactcatcctcagaggagagtacattatcaggtccatccttctt
tagggaggatgtgtgagggaaggataaatcttaataggaactggaggggg
agaggaggcctcagctgggagctctctggatgttctgtcagcctctaagg
cctcaggtggtcctggctcaggcatagggatgcaaatggactcacaaaca
gagaaaggtctggatatactttctctccttccctaactacttcttgaata
tctggccaatgtttacaaactttcagtttcattaacaagattccaataag
aaaaagcttgcacaggaaccttttctgggccaaaagtcttataaaaatct
tttaaacagtcactgactctagcccatttcttctcatctattgctccctc
taggggaaactaaggacgcacttccccaacaaaatcaaaaaaattttctt
aacatcttttctcttaacccatttt
tcctaggctgtgacaaccacacatcacctagaaggacagtgctgtagagg
gttcatcaccaaggcaatttactggccaagagacaggggaccactctgcc
cctagggaatgaggagaagtacaccctaatatctaggttttagactcgca
tgagaggtagattcagactttggccacaggttccagacccagctcatctc
acaggcagcattagatgcattcagcaccaggctccttagacacctggtct
gagagcagaaaggatggagggatatagctggatcatgtcagtacccatgg
agtgcatgtggtggtcagtttaaggtctcaactgacacttaggcacattg
taatggttgggatactgggctgctttcaatagaggcccccattcttatct
caatccaaggtcttaatggtgtagcatctcagtgctggccagggaaggga
tcatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_105517812_105518485
seq2: B6Ng01-040O09.b_46_720

seq1  GAATTCTTTTATAAGTTGGAGATGTTTCCTTTACTCTTGAAACAGTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTATAAGTTGGAGATGTTTCCTTTACTCTTGAAACAGTTTTC  50

seq1  TAAGGGAGGCTGATTTTTTGGGAAAGCTGAGCTTTGGCCTTGATGGTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGGAGGCTGATTTTTTGGGAAAGCTGAGCTTTGGCCTTGATGGTATA  100

seq1  ATTATCATCAATTGAATCAAGAACCTTGGCACAAGATGGAGGGGCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCATCAATTGAATCAAGAACCTTGGCACAAGATGGAGGGGCAGAAA  150

seq1  CACAAGAAGGCTGCCCATTAGGATTGTGATATCTAGCTACCTTGTCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGAAGGCTGCCCATTAGGATTGTGATATCTAGCTACCTTGTCCTCT  200

seq1  AGGGAAGACTCATCCTCAGAGGAGAGTACATTATCAGGTCCATCCTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGACTCATCCTCAGAGGAGAGTACATTATCAGGTCCATCCTTCTT  250

seq1  TAGGGAGGATGTGTGAGGGAAGGATAAATCTTAATAGGAACTGGAGGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGAGGATGTGTGAGGGAAGGATAAATCTTAATAGGAACTGGAGGGGG  300

seq1  AGAGGAGGCCTCAGCTGGGAGCTCTCTGGATGTTCTGTCAGCCTCTAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGGCCTCAGCTGGGAGCTCTCTGGATGTTCTGTCAGCCTCTAAGG  350

seq1  CCTCAGGTGGTCCTGGCTCAGGCATAGGGATGCAAATGGACTCACAAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGGTGGTCCTGGCTCAGGCATAGGGATGCAAATGGACTCACAAACA  400

seq1  GAGAAAGGTCTGGATATACTTTCTCTCCTTCCCTAACTACTTCTTGAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGTCTGGATATACTTTCTCTCCTTCCCTAACTACTTCTTGAATA  450

seq1  TCTGGCCAATGTTTACAAACTTTCAGTTTCATTAACAAGATTCCAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCAATGTTTACAAACTTTCAGTTTCATTAACAAGATTCCAATAAG  500

seq1  AAAAAGCTTGCACAGGAACCTTTTCTGGGCCAAAAGTCTTATAAAAATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCTTGCACAGGAACCTTTTCTGGGCCAAAAGTCTTATAAAAATCT  550

seq1  TTTAAACAGTCACTGACTCTAGCCCATTTCTTCTCATCTATTGCTCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAGTCACTGACTCTAGCCCATTTCTTCTCATCTATTGCTCCCTC  600

seq1  TAGGGGAAACTAAGGACGCACTTCCCCAACAAAATCAAAAAAA-TTTCTT  649
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TAGGGGAAACTAAGGACGCACTTCCCCAACAAAATCAAAAAAATTTTCTT  650

seq1  AACATCTTTTCTCTTAACCCATTTT  674
      |||||||||||||||||||||||||
seq2  AACATCTTTTCTCTTAACCCATTTT  675

seq1: chr12_105653139_105653629
seq2: B6Ng01-040O09.g_82_572 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACATGATCCCTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACACATGATCCCTTCCC  50

seq1  TGGCCAGCACTGAGATGCTACACCATTAAGACCTTGGATTGAGATAAGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGCACTGAGATGCTACACCATTAAGACCTTGGATTGAGATAAGAA  100

seq1  TGGGGGCCTCTATTGAAAGCAGCCCAGTATCCCAACCATTACAATGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGCCTCTATTGAAAGCAGCCCAGTATCCCAACCATTACAATGTGCC  150

seq1  TAAGTGTCAGTTGAGACCTTAAACTGACCACCACATGCACTCCATGGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTCAGTTGAGACCTTAAACTGACCACCACATGCACTCCATGGGTA  200

seq1  CTGACATGATCCAGCTATATCCCTCCATCCTTTCTGCTCTCAGACCAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATGATCCAGCTATATCCCTCCATCCTTTCTGCTCTCAGACCAGGT  250

seq1  GTCTAAGGAGCCTGGTGCTGAATGCATCTAATGCTGCCTGTGAGATGAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAGGAGCCTGGTGCTGAATGCATCTAATGCTGCCTGTGAGATGAGC  300

seq1  TGGGTCTGGAACCTGTGGCCAAAGTCTGAATCTACCTCTCATGCGAGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCTGGAACCTGTGGCCAAAGTCTGAATCTACCTCTCATGCGAGTCT  350

seq1  AAAACCTAGATATTAGGGTGTACTTCTCCTCATTCCCTAGGGGCAGAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTAGATATTAGGGTGTACTTCTCCTCATTCCCTAGGGGCAGAGTG  400

seq1  GTCCCCTGTCTCTTGGCCAGTAAATTGCCTTGGTGATGAACCCTCTACAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGTCTCTTGGCCAGTAAATTGCCTTGGTGATGAACCCTCTACAG  450

seq1  CACTGTCCTTCTAGGTGATGTGTGGTTGTCACAGCCTAGGA  491
      |||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCCTTCTAGGTGATGTGTGGTTGTCACAGCCTAGGA  491