BAC Information

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BAC

Clone NameB6Ng01-041C04
Chromosome12 (Build37)
Map Location 24,920,351 - 24,921,562
singlet/doubletsinglet
Overlap geneEG668710
Upstream geneLOC100042903, LOC100043440, EG668518, LOC100043445, LOC668697, LOC100042923, LOC677338, EG668701, LOC668471, LOC668703, LOC546534, 9030624G23Rik
Downstream geneLOC100042945, EG668711, EG668714, LOC629364, Taf1b, Grhl1, EG629383, Klf11, Cys1, Rrm2, LOC668719, Mboat2, EG629397, C330002I19Rik, Id2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041C04.bB6Ng01-041C04.g
ACCDH867885DH867886
length1,1831,253
definitionDH867885|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C04, 5' end.DH867886|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C04, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatagtgtctgatgccctgtggggggctttctttgtgaaaacctt
acagaatgttttcctgaggctttttgatttgcttggaaaactaactctag
cagcctgagggttgggcataatccccccagacagcagtggggagccaggc
actttgcccccaaactttccctttcctgatagtgcttaaaaaacagggtt
acattctggttctgtttgttccagtactcctctcctctctctcctgacct
ctcccactcagcttgggcttcacagccaatgctgatctcactggctgact
ctgcattgcattttggtgagtcccacttactagtgccaagaagtaaacga
caagcagctagctcctgtcctggtcaaagtttcctaggggctcccagcat
ccccagggtcatgccctgaaccctcccctgagtagaacccctgagtgtgg
caaagaaggcccctgcatgggccagacctgtagaaatgtctggttaggca
ggctctctgggtccctctgagtaattagctggagacgggagccgagaaag
gacaagagcaagggatttgacagcagggttgccagctgatcaatgtggtc
tttgttccttgttccaaaaaagatgacacagtgatccagcctggagcttt
taggaacaagcagcatccctggaagatgctgctcactactgtgaacagga
agagcactgatggcaattcaggagtaacctccatctttcatgtctcaggg
gactcatagcccatataagcaggcttctcccttgtctgaagtctgatcct
acagatcctgtcctggctagttttatgtcaacttaacacaagctagagtc
atctgagaggacaaatctagatttagaaaaatgcttccataagatccagc
tgtaaggcattttcttaatgaagaaataaaggcaatttcataattagata
tgggagggcccagccaattgagagtgctgtcatctctgggctggtggtct
gggtctatataaagcagctgagcaagccaggaggagcaaccataactagc
actctcctcctcatgaatctgcatcagctctgctcaagatctccctgtca
agctcctgtctggacttcctgtgaagaactggagagtgagcccaagccga
tagcctttctctgccagagctggtcatgcgttt
gaattcaaccgctacaagtctggcagatggatgtaacacacgtttcctcc
tttaggaggcttcaatacctgcatgtttctgtggatacttgttctggtat
catttttgcctcgcctcttacgggggaaaaggcctcacatgtaattcaac
attgccttgaagcctggagtgcttggggacaacccaaaattcttaaaaca
gataatggaccggcctacacctctcaaaaatttcgacagttctgtcgcca
gatgaatgtaactcatttaactggtttgccatacaaccctcagggacaag
gcattgtggaacgtgcccaccgcactcttaaatcttacctaatcaaacag
aaagggggagtcaacgaggatctgcccttaacaccgagagtggccgtctc
tatggcactctttactcttaattttttgaatcttgatgaacaaggccgca
ctgcggctgatcgtcactgttcagaaccaaagagacctagagaaatgatc
aaatggaaggatgtcttaaccggaaaatggagaggcccggatcctatttt
aataagatccaggggagctatttgtgtttttccacaggaagaagacaatc
ctctttgggttccagaacgcctcacccgaaggatctccccttcagaagat
gtggacaaaagagggaacactgaaacaacgatagatactgacccttctac
cggagatcctggttcctagtatatcaggggaattgcgttgggtattatgt
ccacctttccctgcccatgcctgtcacgcacagtgcacaagtgagcagtt
taagcttatttaaagaaaagagagattttagaatctctgctattatagtt
gtcttgatagcaacagcagcaatagctgcctctatcactgcttcggccct
tgccttgtctgctacggttcagacaacgcgaatcatcaatgacctttcgg
caagagtgacatcggccctggaaagcaggccacggccaatctccagatat
agggaggcctcttgttgttaaccaacggatcgatcttggtccagaaaggt
ggatatcctgtggccatggctaactgagaagcaaacatagctgcctagct
tcgatatccctctgtacaattgaaaatttttaaagacaacatacctgctc
agcttgtttcttattgtaagatgggacagatgacgaaccttggacggatg
actgactcgtctatgagagatctactgtatcgccaatctctcctaaatat
tag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_24920351_24921562
seq2: B6Ng01-041C04.b_45_1227

seq1  GAATTCATAGTGTCTGATGCCCTGTGGGGGGCTTTCTTTGTGAAAAGCTT  50
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAATTCATAGTGTCTGATGCCCTGTGGGGGGCTTTCTTTGTGAAAACCTT  50

seq1  ACAGATTGTTTTCCTGAGGCTTTTTGATTTGCTTGGAAAACCAACTCTAG  100
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  ACAGAATGTTTTCCTGAGGCTTTTTGATTTGCTTGGAAAACTAACTCTAG  100

seq1  CAGCCTGAGGGTTGGGCATAATCCCCCCAGACAGCAGTGGGGAGCCAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAGGGTTGGGCATAATCCCCCCAGACAGCAGTGGGGAGCCAGGC  150

seq1  ACTTTGCCCCCAAACTTTCCCTTTTCTGTTAGTGCTTAAAAAACAGGGTT  200
      |||||||||||||||||||||||| ||| |||||||||||||||||||||
seq2  ACTTTGCCCCCAAACTTTCCCTTTCCTGATAGTGCTTAAAAAACAGGGTT  200

seq1  ACATCCTGGTTCTGTTTGTTCCAGTACTCCTCTCCTCTCTCTCCTGACCT  250
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTGGTTCTGTTTGTTCCAGTACTCCTCTCCTCTCTCTCCTGACCT  250

seq1  CTCCCACTCAGCTTGGGCTTCACAGCCAATGCTGATCTCACTGGCTGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTCAGCTTGGGCTTCACAGCCAATGCTGATCTCACTGGCTGACT  300

seq1  CTGCATTGCATTTTGGTGAGTCCCACTTACTAGTGCCAAGAAGTGAACGC  350
      |||||||||||||||||||||||||||||||||||||||||||| |||| 
seq2  CTGCATTGCATTTTGGTGAGTCCCACTTACTAGTGCCAAGAAGTAAACG-  349

seq1  AGAAGCAGCTAGCTCCTGTCCTGGTCAAAGTTTCCTAGGGGCTCCCAGCC  400
      | ||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACAAGCAGCTAGCTCCTGTCCTGGTCAAAGTTTCCTAGGGGCTCCCAGCA  399

seq1  TCCCCAGGTCCATGCCCTGAACCCTCCCCTGAGTAGAACCCCTGAGTGTG  450
      ||||||||  ||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGGTCATGCCCTGAACCCTCCCCTGAGTAGAACCCCTGAGTGTG  449

seq1  GCAAAGAAGGCCCCTGCATGGGCCAGACCTGTAGAAATGTCTGGTTAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGAAGGCCCCTGCATGGGCCAGACCTGTAGAAATGTCTGGTTAGGC  499

seq1  AGGCTCTCTGGGTCCCTCTGAGTAATTAGCTGGAGATGGGAGCCCAGCAA  550
      |||||||||||||||||||||||||||||||||||| ||||||| || ||
seq2  AGGCTCTCTGGGTCCCTCTGAGTAATTAGCTGGAGACGGGAGCCGAGAAA  549

seq1  GGACAAGAGCAAGGGATTTGACAGCAGGGTTGCCCGCTGATCAATGTGGT  600
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGACAAGAGCAAGGGATTTGACAGCAGGGTTGCCAGCTGATCAATGTGGT  599

seq1  CTTTGTTCCTTGTTCCAAAAAAGATGACACAGTGATCTAGCCTGAAGCTT  650
      ||||||||||||||||||||||||||||||||||||| |||||| |||||
seq2  CTTTGTTCCTTGTTCCAAAAAAGATGACACAGTGATCCAGCCTGGAGCTT  649

seq1  TTAGGAACAAGCAGCATCCCTGGAAGATGCTGCTCACTACTGTGAACCAG  700
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTAGGAACAAGCAGCATCCCTGGAAGATGCTGCTCACTACTGTGAA-CAG  698

seq1  GAAGAGCACTGATGGCAAGCCAGGAGTAACCTCCATCCTTCATGTCTCAG  750
      ||||||||||||||||||  ||||||||||||||||| ||||||||||||
seq2  GAAGAGCACTGATGGCAATTCAGGAGTAACCTCCATCTTTCATGTCTCAG  748

seq1  GGGACTCATAGCCCATATAAGCAGGCTTCTCCCTTGTCTGAAGTCTGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCATAGCCCATATAAGCAGGCTTCTCCCTTGTCTGAAGTCTGATC  798

seq1  CTACAGATCCTGTCCTGGCTAGTTTTATGTCAACTTAACACAAGCTAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGATCCTGTCCTGGCTAGTTTTATGTCAACTTAACACAAGCTAGAG  848

seq1  TCATCTGAGAGGAGAAATCTAGATTTAGAAAAATGCTTCCATAAGATCCA  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCATCTGAGAGGACAAATCTAGATTTAGAAAAATGCTTCCATAAGATCCA  898

seq1  GCTGTAAGGCATTTTCTTAATGAAGAAATTAAGGCAATTTCATAATTAGA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCTGTAAGGCATTTTCTTAATGAAGAAATAAAGGCAATTTCATAATTAGA  948

seq1  TATGGGAGGGCCCAGCCAATTGAGGGTGCTGTCATCTCTGGGCTGGCGGG  1000
      |||||||||||||||||||||||| |||||||||||||||||||||  ||
seq2  TATGGGAGGGCCCAGCCAATTGAGAGTGCTGTCATCTCTGGGCTGG-TGG  997

seq1  CCTGGGTTCTATAAGAAAGCAGGCTGAGCAAGCCAGGAGAAGCAAACCAA  1050
       ||||| ||||| | |||||| ||||||||||||||||| |||||  | |
seq2  TCTGGG-TCTAT-ATAAAGCA-GCTGAGCAAGCCAGGAGGAGCAA--CCA  1042

seq1  TAACTAGCACTCTCTCCTTCATGACCTCTGCATCAGCTCCTGCCTCCAGG  1100
      ||||||||||||||  | ||||||  |||||||||||| ||| ||| || 
seq2  TAACTAGCACTCTCCTCCTCATGA-ATCTGCATCAGCT-CTG-CTCAAGA  1089

seq1  TTTCTGCCCTGCTCAAGTTCCTGTTCTGACTTCCTTTGATGATGAACTGT  1150
      | |   ||||| ||||| ||||||   ||||||||    ||| |||||| 
seq2  TCT---CCCTG-TCAAGCTCCTGTCTGGACTTCCT---GTGAAGAACTG-  1131

seq1  GAG-GTGGAAGCCTAAGCCAAATAAGCCCTTTTCTCTGCCAAGATGCTTT  1199
      ||| |||  |||| ||||| |   ||||  |||||||||| ||| ||  |
seq2  GAGAGTG--AGCCCAAGCCGA--TAGCC--TTTCTCTGCC-AGA-GC--T  1171

seq1  GGTCATGCTGTTT  1212
      |||||||| ||||
seq2  GGTCATGC-GTTT  1183