BAC Information

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BAC

Clone NameB6Ng01-041C11
Chromosome12 (Build37)
Map Location 68,249,242 - 68,445,867
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745, LOC100040681
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-041C11.bB6Ng01-041C11.g
ACCDH867899DH867900
length1,078953
definitionDH867899|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C11, 5' end.DH867900|Mus musculus domesticus DNA, BAC clone: B6Ng01-041C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,249,242 - 68,250,328)(68,444,913 - 68,445,867)
sequence
gaattctgctttgacactatgatcctgaagttagtgcatgagtattgtag
gaaatccactcattccgacaaaaaacaaatagaataatccaagctgtgtt
attaaccaaggaaagtttttttttgttttgttttgttttaaaaaatgaat
cttagaaacttctgactgctttgatcctgggagaaggaatattttaacat
tttcttctcagtcatgtaccaatagcttaatattcctaggaaagaacaat
attgccatgttagtcagctagccaagtgacaaatagacctggtctccaag
atgcttcatagtgacaactgtgacaaacaatttaacatgtgagaccagga
atcccagcccaaggccaatatattaagagcattaatgaataccagttttt
tgatcaggtaatgccaaaacatgagcagtaataactgtgatcaaatgaat
aactcatcataacaggagaataattctattttacttttaaatgtgtttgc
agaattatgaagctctataaaatacaaataattacagttcctctaatgta
ggaaggaaaagagaacacttacacatactcccctattaggctgaaattta
aaaaactaattttctactttcggtaaaactaatttcaaaaaatagggagt
tagagcaagagtttgttttactttgcttttctaactgataaaatatgata
gtgaaacctgtttgagtacttgcataaggccactgataacaggaaagtca
tatcttctaaatcggctggcatgccagccgggtaacttcgtctaaaaact
agcatgctcaaatcccatgctcccctagtttttgcacttagaaaccatgg
aaaatattgtgcagtataaaaagactacacaatgcacaatgcagaggtta
ggatgtacaccacataattcttttaaactttgttctgatcaaatggttct
aaggagtttagttgaggtctcagtaactcttaaatttaatgaaatctgta
gagtaaaataaccagacaatggattttatctaaaagacatcaactaaaac
tttacccaaatgtatatcccaactccca
gaattctaaagtgtaagtacaaaagtctaggtaggattaaggtaattatg
cagacatgaaaagtcacattgaatacaaagatttattgcttaagcctaat
cctcaggataatagaacgctagtgcaattcattgaaataatgaagggtcc
attccatagaccttatgtaaagcaatgtttaaagccgcagcgaagctaaa
tagtgtgcttgacacaacctgaatattaaataccatttctacttttaaag
atatccctttgaatacaagcttaatatcttcagattataaattcttaagt
gctgatgaattgcttcattgttgaaataaatttattcaataaattccccc
aatgaacaacagccaagtgaatatgaaagttggtgctgctgtttctccac
aatgcgtttctaggttcagtcatgaacttcctattattcaagaacatcct
tgaatacatatgaagaatcacagaccaaaaaaaggaaacaagttcttgct
taaatctgagtacagatacatatgtatttggtagttaaggttaattctca
ctaattaaatgaacttgttgttcttattgaggacctggatttaattacca
gtatccacatggtggcacacagcagtctgttgccctcttcctttttgtgg
ccattgcaagtgtgtgggttacaaacattcatgcaaaaaatatttataca
catagaagtaaacaaaataaaccatatctttaaaaatatttggtgagtta
aaaacactatatatagccatagtccttagcatttgtctaggctccgcccc
acagttacctgggcaacagccagggtgtgcctgactcacaataaaaagct
gctgcttgccttctctgctctctttggcttcttgttttgctctgtccact
cacccctctcctctctctccatgtgctcacagcaggcatctatcaatccc
ctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68249242_68250328
seq2: B6Ng01-041C11.b_30_1108

seq1  GGAATTCTGCTTTGACACTATGATCCTGAAGTTAGTGCATGAGTATTGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCTGCTTTGACACTATGATCCTGAAGTTAGTGCATGAGTATTGTA  50

seq1  GGAAATCCACTCATTCCGACAAAAAACAAATAGAATAATCCAAGCTGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATCCACTCATTCCGACAAAAAACAAATAGAATAATCCAAGCTGTGT  100

seq1  TATTAACCAAGGAAAGTTTTTTTTTGTTTTGTTTTGTTTTAAAAAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACCAAGGAAAGTTTTTTTTTGTTTTGTTTTGTTTTAAAAAATGAA  150

seq1  TCTTAGAAACTTCTGACTGCTTTGATCCTGGGAGAAGGAATATTTTAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGAAACTTCTGACTGCTTTGATCCTGGGAGAAGGAATATTTTAACA  200

seq1  TTTTCTTCTCAGTCATGTACCAATAGCTTAATATTCCTAGGAAAGAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTCAGTCATGTACCAATAGCTTAATATTCCTAGGAAAGAACAA  250

seq1  TATTGCCATGTTAGTCAGCTAGCCAAGTGACAAATAGACCTGGTCTCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCATGTTAGTCAGCTAGCCAAGTGACAAATAGACCTGGTCTCCAA  300

seq1  GATGCTTCATAGTGACAACTGTGACAAACAATTTAACATGTGAGACCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTTCATAGTGACAACTGTGACAAACAATTTAACATGTGAGACCAGG  350

seq1  AATCCCAGCCCAAGGCCAATATATTAAGAGCATTAATGAATACCAGTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCCCAAGGCCAATATATTAAGAGCATTAATGAATACCAGTTTT  400

seq1  TTGATCAGGTAATGCCAAAACATGAGCAGTAATAACTGTGATCAAATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCAGGTAATGCCAAAACATGAGCAGTAATAACTGTGATCAAATGAA  450

seq1  TAACTCATCATAACAGGAGAATAATTCTATTTTACTTTTAAATGTGTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCATCATAACAGGAGAATAATTCTATTTTACTTTTAAATGTGTTTG  500

seq1  CAGAATTATGAAGCTCTATAAAATACAAATAATTACAGTTCCTCTAATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTATGAAGCTCTATAAAATACAAATAATTACAGTTCCTCTAATGT  550

seq1  AGGAAGGAAAAGAGAACACTTACACATACTCCCCTATTAGGCTGAAATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGGAAAAGAGAACACTTACACATACTCCCCTATTAGGCTGAAATTT  600

seq1  AAAAAACTAATTTTCTACTTTCGGTAAAACTAATTTCAAAAAATAGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTAATTTTCTACTTTCGGTAAAACTAATTTCAAAAAATAGGGAG  650

seq1  TTAGAGCAAGAGTTTGTTTTACTTTGCTTTTCTAACTGATAAAATATGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCAAGAGTTTGTTTTACTTTGCTTTTCTAACTGATAAAATATGAT  700

seq1  AGTGAAACCTG-TTGAGTACTTGCATAAGGCCACTGATAACAGGAAAGTC  749
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAACCTGTTTGAGTACTTGCATAAGGCCACTGATAACAGGAAAGTC  750

seq1  ATATCTTCTAAATCGGCTGGCATGCCAGCCGGGTAACTTCGTCTAAAAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTCTAAATCGGCTGGCATGCCAGCCGGGTAACTTCGTCTAAAAAC  800

seq1  TAGCATGCTCAAATCCCATGCTCCCCTAG-TTTTGCACTTAGAAACCATG  848
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TAGCATGCTCAAATCCCATGCTCCCCTAGTTTTTGCACTTAGAAACCATG  850

seq1  GAAAATATTGTGCAGTATAAAAAGACTACACAATGCACAATGCAGAGGTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATATTGTGCAGTATAAAAAGACTACACAATGCACAATGCAGAGGTT  900

seq1  AGGATGTACACCACATAATTCTTTTAAACTTTGTTCTGATCAAATGTATC  948
      ||||||||||||||||||||||||||||||||||||||||||||||  ||
seq2  AGGATGTACACCACATAATTCTTTTAAACTTTGTTCTGATCAAATGGTTC  950

seq1  ATAGGAGTTTAGTTGAGGTCTCAGTAACTCTTAAATTTTAATGAAATCTG  998
        ||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TAAGGAGTTTAGTTGAGGTCTCAGTAACTCTTAAA-TTTAATGAAATCTG  999

seq1  TAAGAAGTAAAATAACACAGACAATGCATTTTATCTTAAAAAGACACTAC  1048
      ||   ||||||||||| ||||||||| |||||||||  ||||||||  | 
seq2  TA--GAGTAAAATAAC-CAGACAATGGATTTTATCT--AAAAGACATCAA  1044

seq1  ATAAAACTTTCACCCAAATGTTATATACACAAACTCCCA  1087
       ||||||||| |||||||||   ||||  | ||||||||
seq2  CTAAAACTTT-ACCCAAATG---TATATCCCAACTCCCA  1079

seq1: chr12_68444913_68445867
seq2: B6Ng01-041C11.g_71_1023 (reverse)

seq1  GAGGGGAGTGGAGTAGAGGCCTGCTGTGAGCACATGGAGAGAGGAGGAGA  50
      ||||||| ||   |||| |||||||||||||||||||||||| |||||||
seq2  GAGGGGATTG--ATAGATGCCTGCTGTGAGCACATGGAGAGA-GAGGAGA  47

seq1  GGGGTGAGTGGACAGAGCAAAAGCAAGAAGGCAAGAGAGAGCAGAGAAGG  100
      |||||||||||||||||||||| ||||||| ||| |||||||||||||||
seq2  GGGGTGAGTGGACAGAGCAAAA-CAAGAAGCCAA-AGAGAGCAGAGAAGG  95

seq1  CAAGCAGCAGC-TTTTATTGTGAGTCAGGCACA-CCTGGCTGTTG-CCAG  147
      ||||||||||| ||||||||||||||||||||| ||||||||||| ||||
seq2  CAAGCAGCAGCTTTTTATTGTGAGTCAGGCACACCCTGGCTGTTGCCCAG  145

seq1  GTAACTGTGGGGCGGAGCCTAGACAAAATGCTAAGGACTATGGCTATATA  197
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GTAACTGTGGGGCGGAGCCTAGAC-AAATGCTAAGGACTATGGCTATATA  194

seq1  TAGTGTTTTTAACTCACCAAATATTTTTAAAGATATGGTTTATTTTGTTT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTTTTAACTCACCAAATATTTTTAAAGATATGGTTTATTTTGTTT  244

seq1  ACTTCTATGTGTATAAATATTTTTTGCATGAATGTTTGTAACCCACACAC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTATGTGTATAAATATTTTTTGCATGAATGTTTGTAACCCACACAC  294

seq1  TTGCAATGGCCAC-AAAAGGAAGAGGGCAACAGACTGCTGTGTGCCACCA  346
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTGCAATGGCCACAAAAAGGAAGAGGGCAACAGACTGCTGTGTGCCACCA  344

seq1  TGTGGATACTGGTAATTAAATCCAGGTCCTCAATAAGAACAACAAGTTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATACTGGTAATTAAATCCAGGTCCTCAATAAGAACAACAAGTTCA  394

seq1  TTTAATTAGTGAGAATTAACCTTAACTACCAAATACATATGTATCTGTAC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAGTGAGAATTAACCTTAACTACCAAATACATATGTATCTGTAC  444

seq1  TCAGATTTAAGCAAGAACTTGTTTCCTTTTTTTGGTCTGTGATTCTTCAT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATTTAAGCAAGAACTTGTTTCCTTTTTTTGGTCTGTGATTCTTCAT  494

seq1  ATGTATTCAAGGATGTTCTTGAATAATAGGAAGTTCATGACTGAACCTAG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATTCAAGGATGTTCTTGAATAATAGGAAGTTCATGACTGAACCTAG  544

seq1  AAACGCATTGTGGAGAAACAGCAGCACCAACTTTCATATTCACTTGGCTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCATTGTGGAGAAACAGCAGCACCAACTTTCATATTCACTTGGCTG  594

seq1  TTGTTCATTGGGGGAATTTATTGAATAAATTTATTTCAACAATGAAGCAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCATTGGGGGAATTTATTGAATAAATTTATTTCAACAATGAAGCAA  644

seq1  TTCATCAGCACTTAAGAATTTATAATCTGAAGATATTAAGCTTGTATTCA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGCACTTAAGAATTTATAATCTGAAGATATTAAGCTTGTATTCA  694

seq1  AAGGGATATCTTTAAAAGTAGAAATGGTATTTAATATTCAGGTTGTGTCA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATATCTTTAAAAGTAGAAATGGTATTTAATATTCAGGTTGTGTCA  744

seq1  AGCACACTATTTAGCTTCGCTGCGGCTTTAAACATTGCTTTACATAAGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACACTATTTAGCTTCGCTGCGGCTTTAAACATTGCTTTACATAAGGT  794

seq1  CTATGGAATGGACCCTTCATTATTTCAATGAATTGCACTAGCGTTCTATT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGAATGGACCCTTCATTATTTCAATGAATTGCACTAGCGTTCTATT  844

seq1  ATCCTGAGGATTAGGCTTAAGCAATAAATCTTTGTATTCAATGTGACTTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGAGGATTAGGCTTAAGCAATAAATCTTTGTATTCAATGTGACTTT  894

seq1  TCATGTCTGCATAATTACCTTAATCCTACCTAGACTTTTGTACTTACACT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTCTGCATAATTACCTTAATCCTACCTAGACTTTTGTACTTACACT  944

seq1  TTAGAATTC  955
      |||||||||
seq2  TTAGAATTC  953