BAC Information

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BAC

Clone NameB6Ng01-042B05
Chromosome12 (Build37)
Map Location 68,037,314 - 68,092,228
singlet/doubletdoublet
Overlap geneMdga2
Upstream geneLOC100040700, EG238217
Downstream geneLOC100040745
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042B05.bB6Ng01-042B05.g
ACCDH868554DH868555
length1,093988
definitionDH868554|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B05, 5' end.DH868555|Mus musculus domesticus DNA, BAC clone: B6Ng01-042B05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(68,037,314 - 68,038,421)(68,091,240 - 68,092,228)
sequence
gaattcttcaaatattcttcacatatatgcatcaattcacacagagtagt
ttaactactgtgaggtttaacttaaaaaggtaatacaatgttaaaaaaat
tctacagacagaactccacacgtttaagtggataggaatcttctcatgat
agaatgaaacaaaacaaacaagcaaaaataaagagaaggaaaggaaaaaa
aaaaaacctgtatgcaagatccccaagactaagtaagtagtcttcctgac
caatcatcctgcttactgtaagatgattgtttctatcttggagagatgat
tcttgtataaagaacttgctgtacaagagtaagggccagggtttgaatat
cctgaaccaatgaaaatgcaaagcaggcatatatcctgtgccagaactca
ggagacagggagattcctggtgctggatgctagatagattactagcaatc
aatgactttccttagagcccctgccttgacaatgagagtggagagacatg
gaggaagagactatagatgaacattctaaagtataaatttcatcatggct
gaatctcaataggagaagattggcatctccaagcattttgaaatacttcc
tagtcttatctatcctaaaaggaaagtttccttctctctatgtactacga
tattatttttaaaaaatcaagctttaaaataataaaagacaaataatttt
taagatattaagaatttatgcattaatgttaatatactttcaattggtta
cttatttcttatatggtgtccattagcaaatcgaaaattttgctacacta
agttctacaaaagttgaaaaattgatattatgaattgtcaactgtgatta
ttttcattcatttattttataacaattacatttggttttatttttatatt
taacataccttacagagattttcatgttttgctcttttttctaaattatt
acttgaaattttggttaaaattgtataaacaaactaataaattgtagtcc
tttaacagtctcaacatgattttttctgctttgtgatatctataggtttg
agtctactacttttattgtttacaaagaagttttctactagtt
gaattctgggatgataaaaagagaaattcgtccaggtggttcaattttat
gcaagactctgaatattttgaaagaactttgctcactctagcctttgttg
catggacttgtggatgttacaggccttgctaggtgaaaattcccttctaa
cataatgcacatattgttcacgcacaaacacacacacttccatttgcctc
tatgtgatggaaatgtgataaagagagaatgaacagggagacagctggtt
gtaaaaaaatgatagcatcatagaattctgtttcttattctgggaaaaaa
gaagaaccatttttgaggagatggtttgggagtattgtttcatattactt
tagatgcaaggggagcttttcaatttcaagaataaaaaataaattaatgg
aaagtagagtcagggaaactgactgtatagtagccatcaaactagaacca
aataattattttcccaaccatccaaaggcatgttatagcaaagatcctgt
tctttccggcctttctctcatcaccaatgcaatctgagtacctacttgct
gggggactttatcttttttgacatatattattattattattattattatt
attattattattattattattatgtattttcctcaattacatttggaatg
ctatcccaaaagtcccccataggaatgaagatgtccactgaagcatctct
actaaactccatttgtaacatttatattttcaattcttttttcttttttt
aaaattttaagtttgcatatttacatattaggttctatcctgtaatcttc
atgcacatgtgtagagattttgtgtccctgccctaccaccatcacagctc
tttctcccttcagttgttttaacttccttccccatctactcttcctgttc
ctcttcttgtctcatgtactctgtaagtggagttctattaggttattcta
aattgttatgtctcattaccccacatttgtcgtccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_68037314_68038421
seq2: B6Ng01-042B05.b_44_1136

seq1  GAATTCTTCAAATATTCTTCACATATATGCATCAATTCACACAGAGTAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAATATTCTTCACATATATGCATCAATTCACACAGAGTAGT  50

seq1  TTAACTACTGTGAGGTTTAACTTAAAAAGGTAATACAATGTTAAAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTACTGTGAGGTTTAACTTAAAAAGGTAATACAATGTTAAAAAAAT  100

seq1  TCTACAGACAGAACTCCACACGTTTAAGTGGATAGGAATCTTCTCATGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAGACAGAACTCCACACGTTTAAGTGGATAGGAATCTTCTCATGAT  150

seq1  AGAATGAAACAAAACAAACAAGCAAAAATAAAGAGAAGGAAAGGAAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGAAACAAAACAAACAAGCAAAAATAAAGAGAAGGAAAGGAAAAAA  200

seq1  AAAAAACCTGTATGCAAGATCCCCAAGACTAAGTAAGTAGTCTTCCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCTGTATGCAAGATCCCCAAGACTAAGTAAGTAGTCTTCCTGAC  250

seq1  CAATCATCCTGCTTACTGTAAGATGATTGTTTCTATCTTGGAGAGATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCATCCTGCTTACTGTAAGATGATTGTTTCTATCTTGGAGAGATGAT  300

seq1  TCTTGTATAAAGAACTTGCTGTACAAGAGTAAGGGCCAGGGTTTGAATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTATAAAGAACTTGCTGTACAAGAGTAAGGGCCAGGGTTTGAATAT  350

seq1  CCTGAACCAATGAAAATGCAAAGCAGGCATATATCCTGTGCCAGAACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACCAATGAAAATGCAAAGCAGGCATATATCCTGTGCCAGAACTCA  400

seq1  GGAGACAGGGAGATTCCTGGTGCTGGATGCTAGATAGATTACTAGCAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGGGAGATTCCTGGTGCTGGATGCTAGATAGATTACTAGCAATC  450

seq1  AATGACTTTCCTTAGAGCCCCTGCCTTGACAATGAGAGTGGAGAGACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTCCTTAGAGCCCCTGCCTTGACAATGAGAGTGGAGAGACATG  500

seq1  GAGGAAGAGACTATAGATGAACATTCTAAAGTATAAATTTCATCATGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGAGACTATAGATGAACATTCTAAAGTATAAATTTCATCATGGCT  550

seq1  GAATCTCAATAGGAGAAGATTGGCATCTCCAAGCATTTTGAAATACTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCAATAGGAGAAGATTGGCATCTCCAAGCATTTTGAAATACTTCC  600

seq1  TAGTCTTATCTATCCTAAAAGGAAAGTTTCCTTCTCTCTATGTACTACGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTATCTATCCTAAAAGGAAAGTTTCCTTCTCTCTATGTACTACGA  650

seq1  TATTATTTTTAAAAAATCAAGCTTTAAAATAATAAAAGACAAATAATTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTTTTAAAAAATCAAGCTTTAAAATAATAAAAGACAAATAATTTT  700

seq1  TAAGATATTAAGAATTTATGCATTAATGTTAATATACTTTCAATTGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATATTAAGAATTTATGCATTAATGTTAATATACTTTCAATTGGTTA  750

seq1  CTTATTTCTTATATGGTGTCCATTAGCAAATCGAAAATTTTGCTACACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCTTATATGGTGTCCATTAGCAAATCGAAAATTTTGCTACACTA  800

seq1  AGTTCTACAAAAGTTGAAAAATTGATATTATGAATTGTCAACTGTGATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTACAAAAGTTGAAAAATTGATATTATGAATTGTCAACTGTGATTA  850

seq1  TTTTCATTCATTTATTTTATAACAATTACATTTGGTTTTATTTTTATATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTCATTTATTTTATAACAATTACATTTGGTTTTATTTTTATATT  900

seq1  TAACATACCTTACAGAGATTTTCATGTTTTGCTCTTTTTTTCTAAATTAT  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAACATACCTTACAGAGATTTTCATGTTTTGCTC-TTTTTTCTAAATTAT  949

seq1  TACTTGAAATTTTTGGTTAAAATTGTATAAAACAAAACTAATAAATTGTT  1000
      ||||||||| |||||||||||||||||||||   ||||||||||||||| 
seq2  TACTTGAAA-TTTTGGTTAAAATTGTATAAA--CAAACTAATAAATTGT-  995

seq1  AGGTCCTTTAACAGTCTCAAACAATGATTTTTTTCTGCTTTGTGATATCT  1050
        ||||||||||||||||||   |||| ||||||||||||||||||||| 
seq2  -AGTCCTTTAACAGTCTCAA--CATGA-TTTTTTCTGCTTTGTGATATC-  1040

seq1  TATAGGTTTGAAGTTCTACTTACTTTTATTGTATACAAAAGAAGTTTTCT  1100
      |||||||||||   ||||| |||||||||||| ||| |||||||||||| 
seq2  TATAGGTTTGA--GTCTAC-TACTTTTATTGTTTAC-AAAGAAGTTTTC-  1085

seq1  TACTAGTT  1108
      ||||||||
seq2  TACTAGTT  1093

seq1: chr12_68091240_68092228
seq2: B6Ng01-042B05.g_66_1053 (reverse)

seq1  GAGGGACGACAAATTGTGGGGTATATGAGACATAACAATTTAG-ATAA-C  48
      || |||||||||| ||||||||| ||||||||||||||||||| |||| |
seq2  GAAGGACGACAAA-TGTGGGGTA-ATGAGACATAACAATTTAGAATAACC  48

seq1  TTATAGAACTACACTTACAGAGTACATGAGACAAGAAGAGGGAAACAGGG  98
      | |||||||| ||||||||||||||||||||||||||||||  |||| ||
seq2  TAATAGAACTCCACTTACAGAGTACATGAGACAAGAAGAGG--AACA-GG  95

seq1  AAGAGTAGATGGGGGAAGGAAG-TAAAACAACTGAAGGGAG-AAGAGCTG  146
      |||||||||| ||||||||||| |||||||||||||||||| ||||||||
seq2  AAGAGTAGAT-GGGGAAGGAAGTTAAAACAACTGAAGGGAGAAAGAGCTG  144

seq1  TGATGGTGGTAGGGCAGGGACAC-AAATCTCTACACATGTGCATGAAGAT  195
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGATGGTGGTAGGGCAGGGACACAAAATCTCTACACATGTGCATGAAGAT  194

seq1  TACAGGATAGAACCTAATATGT-AATATGCAAACTTAAAATTTTAAAAAA  244
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TACAGGATAGAACCTAATATGTAAATATGCAAACTTAAAATTTTAAAAAA  244

seq1  AGAAAAATAGAATTGAAAATATAAATGTTACAAATGGAGTTTAGTAGAGA  294
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAA-AGAATTGAAAATATAAATGTTACAAATGGAGTTTAGTAGAGA  293

seq1  TGCTTCAGTGGACATCTTCATTCCTATGGGGGACTTTTGGGATAGCATTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCAGTGGACATCTTCATTCCTATGGGGGACTTTTGGGATAGCATTC  343

seq1  CAAATGTAATTGAGGAAAATACATAATAATAATAATAATAATAATAATAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTAATTGAGGAAAATACATAATAATAATAATAATAATAATAATAA  393

seq1  TAATAATAATAATAATAATATATGTCAAAAAAGATAAAGTCCCCCAGCAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATATATGTCAAAAAAGATAAAGTCCCCCAGCAA  443

seq1  GTAGGTACTCAGATTGCATTGGTGATGAGAGAAAGGCCGGAAAGAACAGG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTACTCAGATTGCATTGGTGATGAGAGAAAGGCCGGAAAGAACAGG  493

seq1  ATCTTTGCTATAACATGCCTTTGGATGGTTGGGAAAATAATTATTTGGTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGCTATAACATGCCTTTGGATGGTTGGGAAAATAATTATTTGGTT  543

seq1  CTAGTTTGATGGCTACTATACAGTCAGTTTCCCTGACTCTACTTTCCATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGATGGCTACTATACAGTCAGTTTCCCTGACTCTACTTTCCATT  593

seq1  AATTTATTTTTTATTCTTGAAATTGAAAAGCTCCCCTTGCATCTAAAGTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTTTTTATTCTTGAAATTGAAAAGCTCCCCTTGCATCTAAAGTA  643

seq1  ATATGAAACAATACTCCCAAACCATCTCCTCAAAAATGGTTCTTCTTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAACAATACTCCCAAACCATCTCCTCAAAAATGGTTCTTCTTTTT  693

seq1  TCCCAGAATAAGAAACAGAATTCTATGATGCTATCATTTTTTTACAACCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAATAAGAAACAGAATTCTATGATGCTATCATTTTTTTACAACCA  743

seq1  GCTGTCTCCCTGTTCATTCTCTCTTTATCACATTTCCATCACATAGAGGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCCCTGTTCATTCTCTCTTTATCACATTTCCATCACATAGAGGC  793

seq1  AAATGGAAGTGTGTGTGTTTGTGCGTGAACAATATGTGCATTATGTTAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAAGTGTGTGTGTTTGTGCGTGAACAATATGTGCATTATGTTAGA  843

seq1  AGGGAATTTTCACCTAGCAAGGCCTGTAACATCCACAAGTCCATGCAACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAATTTTCACCTAGCAAGGCCTGTAACATCCACAAGTCCATGCAACA  893

seq1  AAGGCTAGAGTGAGCAAAGTTCTTTCAAAATATTCAGAGTCTTGCATAAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGAGTGAGCAAAGTTCTTTCAAAATATTCAGAGTCTTGCATAAA  943

seq1  ATTGAACCACCTGGACGAATTTCTCTTTTTATCATCCCAGAATTC  989
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAACCACCTGGACGAATTTCTCTTTTTATCATCCCAGAATTC  988