BAC Information

Click to search

BAC

Clone NameB6Ng01-042C24
Chromosome12 (Build37)
Map Location 34,524,693 - 34,687,687
singlet/doubletdoublet
Overlap geneLOC668806, Ferd3l, Twist1
Upstream genePbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb, LOC668801
Downstream geneHdac9, 4921508M14Rik, Prps1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042C24.bB6Ng01-042C24.g
ACCDH868635DH868636
length1,0891,096
definitionDH868635|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C24, 5' end.DH868636|Mus musculus domesticus DNA, BAC clone: B6Ng01-042C24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,686,579 - 34,687,687)(34,524,693 - 34,525,784)
sequence
gaattctttcctgatggggccagccagtttgagctaaatactagcagagc
actggatactttatgaacttttcagtctatacctgacacccacccttaat
gtggcttacggattaacactaccagctctgaagcctcacagtaatagaat
aggcacagatggcccatttgcaggccaccttgcaggcaaacaggaaacgg
agtgaaaaatagcacttattgctggtgtagacatcgttttgatttctagt
tttgcatatttgactctttcattgacaagcgtcctcacatgtgtcctcag
aagatctgtaatatcttcctctagcatcctttcctgatcataacaaatag
tgtttcacgtggaaataacaatactcagggtctgtaaagctgcagtgact
caaagggaagggtaccccctcttttcgcactggtatgatatcctgttctc
tttatgtttccttctttttgaaataatatttaaagacaatattataagat
gtcaataagttttaagtcctttcattctatgggtgttttcatcaggtcaa
acaatgacttttatgtaaaataattttattttgtagtgacaatttagaga
acttaccctgcatgcctacacgtggaaacttcatgccacaatgtgaaaac
taaacagaaactgttctccatacttactatagactaggatttttaaaggg
tagagggataaaaaacaaaacaaaacaaaaaaacaaaaaaaaaaaaaaaa
aaaccaaaaaaaaaaacaaagcaatgtcaagaactaagagctggcagcac
aaaagcatttaagttgtatccacccagagaaatgctccatgaaaaatttt
aaacaataaattctgtcatcttgaaaagataattccaaagagtttcctgt
ttccttcacattgggggactttgtgttctgcagtgctggagggaaagcaa
aacaggaaatttgttttaattttagcacatctaaatacaaaacactttaa
aatagcatgagatgcatgcactgctcaaccaaacagggatatcatgaaat
tatccttaccacctcaatgaattgtagttatcattctaa
gaattccatattagtaaggactagtagttcatgctcaacattgcaggaga
gagaattgcctaccagctgtggaccccaatcatgacttgtattttgattt
ccctctgcttgagtatgtttctctatcacttgttttcaaattcaggagaa
ttataacgatgcttatcatattcttctgatccaagatccaaaaccaattg
tataatttaagcaaatatatatgtaattagagtggatggccactctcagg
ggtatattcctcaacatatatcttcaaagtagactctatattaattttta
aaatgctctagagcttgcaaagtattctggaatagaagacatagccaatt
aaaagactaaaagttgcagtatccttaatgcatttctttaagttttaata
taaattaattggtagtaattcctaggagaaagttttaatgctataatccc
ggtatgtttttatgaaggagcttctgtaagagaaaaatcccagtctcggt
cctggctcacacagtcgttttttctttcctctagagattgctgtttggaa
ggagagaatgggagcacagtctaggctttaaatcacatctttgtgaggtg
cttggcttgcacactactctggctattttattattattattattattatt
attattattattattattattattaccattatacttgtatgcacaagcat
ttgtgtatgagtgtgtttgtatgtgtgtcacagtgcatatgtgaaggtca
aggggaatttgaggaagctggtctcagggactgaactcagtttatcaagc
ttgtcaacaagtgcctttacctgctgagccaccacactggtttctcgttg
tttcttaataaacgacgtttggaagtggtgactcttgccttttcagttct
tgcttgcacccatgtagatgattaagactgctaaagacttggtttgatac
atcatgaagcctaacgtttcacatgtgtgtttgtggggcggtgtgcctgt
atggaaggtgagtttccaagcctggggaaactgtaggctaagatatacat
gtctttctaccggttcctcccttcaataaccaaaagcagtttaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34686579_34687687
seq2: B6Ng01-042C24.b_41_1129 (reverse)

seq1  TTAGAATTGATAAACTACAAATTCATTTGAGTTGTAAAAGGATAAATTTC  50
      |||||| |||| |||||| ||||||||   || ||  |||||| ||||||
seq2  TTAGAA-TGAT-AACTAC-AATTCATTGAGGTGGT--AAGGAT-AATTTC  44

seq1  ATGATTAATACCTGTTTGGTTGAGCAAGTGCAATGCATTCTCATGCTATT  100
      |||||  || ||||||||||||||| ||||| ||||| ||||||||||||
seq2  ATGAT--ATCCCTGTTTGGTTGAGC-AGTGC-ATGCA-TCTCATGCTATT  89

seq1  TTTAAAAGTTGTTTTGTATTTAGATGTGCTAAAAATTAAAAACAAATTTC  150
      ||  |||| |||||||||||||||||||||||||  | ||||||||||||
seq2  TT--AAAG-TGTTTTGTATTTAGATGTGCTAAAA--TTAAAACAAATTTC  134

seq1  CTGTTTTGCTTTTCCCTCCAGCACTGCAGAACACAAAGTCCCCCAATGTG  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGC-TTTCCCTCCAGCACTGCAGAACACAAAGTCCCCCAATGTG  183

seq1  AAGGAAACAGGAAACTCTTTGGAATTATCTTTTCAAGATGACAGAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACAGGAAACTCTTTGGAATTATCTTTTCAAGATGACAGAATTTA  233

seq1  TTGTTTAAAATTTTTCATGGAGCATTTCTCTGGGTGGATACAACTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAAAATTTTTCATGGAGCATTTCTCTGGGTGGATACAACTTAAAT  283

seq1  GCTTTTGTGCTGCCAGCTCTTAGTTCTTGACATTGCTTTGTTTTTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGTGCTGCCAGCTCTTAGTTCTTGACATTGCTTTGTTTTTTTTTT  333

seq1  TTGTTTTTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTGTTTTGTTTTTT  400
      | |   ||||||||||||||||||||||||||||||||||||||||||||
seq2  TGG---TTTTTTTTTTTTTTTTTTTGTTTTTTTGTTTTGTTTTGTTTTTT  380

seq1  ATCCCTCTACCCTTTAAAAATCCTAGTCTATAGTAAGTATGGAGAACAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCTACCCTTTAAAAATCCTAGTCTATAGTAAGTATGGAGAACAGT  430

seq1  TTCTGTTTAGTTTTCACATTGTGGCATGAAGTTTCCACGTGTAGGCATGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTAGTTTTCACATTGTGGCATGAAGTTTCCACGTGTAGGCATGC  480

seq1  AGGGTAAGTTCTCTAAATTGTCACTACAAAATAAAATTATTTTACATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGTTCTCTAAATTGTCACTACAAAATAAAATTATTTTACATAAA  530

seq1  AGTCATTGTTTGACCTGATGAAAACACCCATAGAATGAAAGGACTTAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTGTTTGACCTGATGAAAACACCCATAGAATGAAAGGACTTAAAA  580

seq1  CTTATTGACATCTTATAATATTGTCTTTAAATATTATTTCAAAAAGAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGACATCTTATAATATTGTCTTTAAATATTATTTCAAAAAGAAGG  630

seq1  AAACATAAAGAGAACAGGATATCATACCAGTGCGAAAAGAGGGGGTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAAGAGAACAGGATATCATACCAGTGCGAAAAGAGGGGGTACCC  680

seq1  TTCCCTTTGAGTCACTGCAGCTTTACAGACCCTGAGTATTGTTATTTCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTGAGTCACTGCAGCTTTACAGACCCTGAGTATTGTTATTTCCA  730

seq1  CGTGAAACACTATTTGTTATGATCAGGAAAGGATGCTAGAGGAAGATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGAAACACTATTTGTTATGATCAGGAAAGGATGCTAGAGGAAGATATT  780

seq1  ACAGATCTTCTGAGGACACATGTGAGGACGCTTGTCAATGAAAGAGTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATCTTCTGAGGACACATGTGAGGACGCTTGTCAATGAAAGAGTCAA  830

seq1  ATATGCAAAACTAGAAATCAAAACGATGTCTACACCAGCAATAAGTGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCAAAACTAGAAATCAAAACGATGTCTACACCAGCAATAAGTGCTA  880

seq1  TTTTTCACTCCGTTTCCTGTTTGCCTGCAAGGTGGCCTGCAAATGGGCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCACTCCGTTTCCTGTTTGCCTGCAAGGTGGCCTGCAAATGGGCCA  930

seq1  TCTGTGCCTATTCTATTACTGTGAGGCTTCAGAGCTGGTAGTGTTAATCC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTATTCTATTACTGTGAGGCTTCAGAGCTGGTAGTGTTAATCC  980

seq1  GTAAGCCACATTAAGGGTGGGTGTCAGGTATAGACTGAAAAGTTCATAAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCACATTAAGGGTGGGTGTCAGGTATAGACTGAAAAGTTCATAAA  1030

seq1  GTATCCAGTGCTCTGCTAGTATTTAGCTCAAACTGGCTGGCCCCATCAGG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCAGTGCTCTGCTAGTATTTAGCTCAAACTGGCTGGCCCCATCAGG  1080

seq1  AAAGAATTC  1109
      |||||||||
seq2  AAAGAATTC  1089

seq1: chr12_34524693_34525784
seq2: B6Ng01-042C24.g_64_1159

seq1  GAATTCCATATTAGTAAGGACTAGTAGTTCATGCTCAACATTGCAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATATTAGTAAGGACTAGTAGTTCATGCTCAACATTGCAGGAGA  50

seq1  GAGAATTGCCTACCAGCTGTGGACCCCAATCATGACTTGTATTTTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTGCCTACCAGCTGTGGACCCCAATCATGACTTGTATTTTGATTT  100

seq1  CCCTCTGCTTGAGTATGTTTCTCTATCACTTGTTTTCAAATTCAGGAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGCTTGAGTATGTTTCTCTATCACTTGTTTTCAAATTCAGGAGAA  150

seq1  TTATAACGATGCTTATCATATTCTTCTGATCCAAGATCCAAAACCAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAACGATGCTTATCATATTCTTCTGATCCAAGATCCAAAACCAATTG  200

seq1  TATAATTTAAGCAAATATATATGTAATTAGAGTGGATGGCCACTCTCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTAAGCAAATATATATGTAATTAGAGTGGATGGCCACTCTCAGG  250

seq1  GGTATATTCCTCAACATATATCTTCAAAGTAGACTCTATATTAATTTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATATTCCTCAACATATATCTTCAAAGTAGACTCTATATTAATTTTTA  300

seq1  AAATGCTCTAGAGCTTGCAAAGTATTCTGGAATAGAAGACATAGCCAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTCTAGAGCTTGCAAAGTATTCTGGAATAGAAGACATAGCCAATT  350

seq1  AAAAGACTAAAAGTTGCAGTATCCTTAATGCATTTCTTTAAGTTTTAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACTAAAAGTTGCAGTATCCTTAATGCATTTCTTTAAGTTTTAATA  400

seq1  TAAATTAATTGGTAGTAATTCCTAGGAGAAAGTTTTAATGCTATAATCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAATTGGTAGTAATTCCTAGGAGAAAGTTTTAATGCTATAATCCC  450

seq1  GGTATGTTTTTATGAAGGAGCTTCTGTAAGAGAAAAATCCCAGTCTCGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTTTTATGAAGGAGCTTCTGTAAGAGAAAAATCCCAGTCTCGGT  500

seq1  CCTGGCTCACACAGTCGTTTTTTCTTTCCTCTAGAGATTGCTGTTTGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTCACACAGTCGTTTTTTCTTTCCTCTAGAGATTGCTGTTTGGAA  550

seq1  GGAGAGAATGGGAGCACAGTCTAGGCTTTAAATCACATCTTTGTGAGGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAATGGGAGCACAGTCTAGGCTTTAAATCACATCTTTGTGAGGTG  600

seq1  CTTGGCTTGCACACTACTCTGGCTATTTTATTATTATTATTATTATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTGCACACTACTCTGGCTATTTTATTATTATTATTATTATTATT  650

seq1  ATTATTATTATTATTATTATTATTACCATTATACTTGTATGCACAAGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTATTATTATTATTATTATTACCATTATACTTGTATGCACAAGCAT  700

seq1  TTGTGTATGAGTGTGTTTGTATGTGTGTCACAGTGCATATGTGAAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTATGAGTGTGTTTGTATGTGTGTCACAGTGCATATGTGAAGGTCA  750

seq1  AGGGGAATTTGAGGAAGCTGGTCTCAGGGACTGAACTCAGTTTATCAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTTGAGGAAGCTGGTCTCAGGGACTGAACTCAGTTTATCAAGC  800

seq1  TTGTCAACAAGTGCCTTTACCTGCTGAGCCACCACACTGGTTTCTCGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACAAGTGCCTTTACCTGCTGAGCCACCACACTGGTTTCTCGTTG  850

seq1  TTTCTTAATAAACGACGTTTGGAAGTGGTGACTCTTGCCTTTTCAGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAATAAACGACGTTTGGAAGTGGTGACTCTTGCCTTTTCAGTTCT  900

seq1  TGCTTGCACCCATGTAGATGATTAAGACTGCTAAAGACTTGGTTTGATAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGCACCCATGTAGATGATTAAGACTGCTAAAGACTTGGTTTGATAC  950

seq1  ATCATGAAGCCTAACGTTTCACATGTGTGTTTGT-GTGCGGTGTGCCTGT  999
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  ATCATGAAGCCTAACGTTTCACATGTGTGTTTGTGGGGCGGTGTGCCTGT  1000

seq1  TTGG-ATGTGAGTTTCCAAGCCTGTGGAAACTGGAGGCTAAGATA-ACAT  1047
       ||| | ||||||||||||||||| |||||||| ||||||||||| ||||
seq2  ATGGAAGGTGAGTTTCCAAGCCTGGGGAAACTGTAGGCTAAGATATACAT  1050

seq1  GTCTTTTTCAACTGTT-CTCCCTTCTATTAACCAAAGCAGTTAAAA-  1092
      |||||| | | | ||| |||||||| || | | ||||||||| ||| 
seq2  GTCTTTCT-ACCGGTTCCTCCCTTCAATAACCAAAAGCAGTTTAAAA  1096