BAC Information

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BAC

Clone NameB6Ng01-042J02
Chromosome12 (Build37)
Map Location 56,942,011 - 57,066,716
singlet/doubletdoublet
Overlap geneBrms1l, LOC100039915
Upstream geneCfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, 1110008L16Rik, LOC673593, LOC665366, Psma6, LOC100039871, Nfkbia, Aldoa-ps1, Insm2, Garnl1
Downstream geneLOC382600, LOC382601, Mbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042J02.bB6Ng01-042J02.g
ACCDH868906DH868907
length1,151901
definitionDH868906|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J02, 5' end.DH868907|Mus musculus domesticus DNA, BAC clone: B6Ng01-042J02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(57,065,564 - 57,066,716)(56,942,011 - 56,942,871)
sequence
gaattcttcagtgtaagcaagaaattccttctctatgcctagcatagaaa
agatataaccttaagcccagagaatacagccacgccattattttcaaacc
tggaactagtggtcaagcatttatacctgaccaagagattctccatgata
cttgtgcttctaagatcccctgtctcaagaccatgggttgatatgttctc
caacatctgattcacacagcaggtgagggagtcagggctcagaggtagga
tcactctacacaagtatgacgagctgagttcagaaccccagtacaggtgc
agctgaacatgcctgcatcccagtgctgaagaagcagagacaggaaaatc
cctggcatttgctggtcaacctagtctagatgaatcagttagatccaggc
tcagtgaaaaaccctgtcttaaaacacaaggtagaaaactactgagaaag
acaattgatcttggtctctggcctaagcatacacacatacacacacacac
acacacgcacactgatagatagatagaaatatagatagatagatagaaaa
atagatagatagatagatagatagatacatacatacatacatacatacat
acatacatacagatagacaaaaatactgaaatactgcaagccaattttta
aagaatttagaggaagagacagagggcactaggaggataggagggaaggg
aaatgcaatcaggatgtaaatttcaaaattactaatctgaaaaaaagatg
tatgtatatgtatgagatatatgtgtttatgtataaactatataatgtat
atatgtacatgtgtgtatatgttatactcacatataaatacacacacata
cgtacacacatatagtgtaactttagataaatataaaataatatgattct
ttaagggttttgaaaagaaaaggaattgagctgaatcttctttcttgggg
accagttaagctgtgaatgggtagcagaagcaggagagccatcagcaatg
ctctattgctagggtttgtctaagtgccctgtctacaccatccattgaag
cttcacacctccttgaggtggcaattactattattcttcaattgatggag
gaaacgatgtacagaagctgaacaagccttttgtccaagatcttcccagc
t
gaattccaagtgtggttttttttttttaataatattgacgttttatgaat
gtagtcatttttggtgttaagttctcaagaattagtgtaaagtcaaaaat
gagttaattacttcattgacttcattacttcatagcttttaagaagattg
aaaaatgggtaaacactagatgctctagagacttggagttttaacgaatt
tgacattacgttaattctatggtggtaattattttggataaaaattgttt
aatttcttttaaactggaccttggatgtccagtttcatattacaactttt
tttttttctgtctggactaacatcagaattttttgaaacagttttatctt
ttctgtttgtttttattttttgagatagggtttcatgtatcccaggctgg
cctcaaacatgctaagtggcgaatagtcatagctagtcttagactcctaa
tcctgcctgtgcctcccaagcgctggaatctcaagtgtgtgcctccaggc
ctgccctgaagttttatctttgatatttccttttttttttttaacagaaa
tggatgatgaagattgtgaaaggagaaggatggagtgtttagatgagatg
tccaacctggagaagcagtttacagacctcaaagatcagtaagtactaac
cagatggccctcgtcactgaatctcagtggcatcagatttacaagcacag
gagcaattacagcgtttctgctgtgtttccttttgtgttttatgggaact
gactgatctggacaggagcttcagttattgtttacccgctagagacctca
ttagctcaacagagttttgaggccactgaggttttgggggtggatggact
tgacctgtggcaccctcaccaaccgtctgatgcaaactggacttctgtgt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_57065564_57066716
seq2: B6Ng01-042J02.b_45_1195 (reverse)

seq1  AGCTGGG-AGATCTTGGACAAAGGGCTTTGTTCAGCTTCTGTACATTTCT  49
      ||||||| |||||||||||||| ||| ||||||||||||||||||  || 
seq2  AGCTGGGAAGATCTTGGACAAAAGGC-TTGTTCAGCTTCTGTACA--TCG  47

seq1  GTTTCTTCATCATATGAAG-ATAATAGTAATTGCCACCTCAAAGGGAGTG  98
       || || |||||  ||||| |||||||||||||||||||| ||||  |||
seq2  TTTCCTCCATCAATTGAAGAATAATAGTAATTGCCACCTC-AAGGAGGTG  96

seq1  TGAAGCTTCAATGGGATGGTGTAGACAGGGCACTTAGACAAACCCTAGC-  147
      |||||||||||| |||||||||||||||||||||||||||||||||||| 
seq2  TGAAGCTTCAAT-GGATGGTGTAGACAGGGCACTTAGACAAACCCTAGCA  145

seq1  ATAGAGCATTGCTGATGGCTCTCCTGCTTCTGCTAACCATTCACAGCTTA  197
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATAGAGCATTGCTGATGGCTCTCCTGCTTCTGCTACCCATTCACAGCTTA  195

seq1  ACTGGTCCCCAAGAAAGAAGATTCAGCTCAATTCCTTTTCTTTTCAAAAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTCCCCAAGAAAGAAGATTCAGCTCAATTCCTTTTCTTTTCAAAAC  245

seq1  CCTTAAAGAATCATATTATTTTATATTTATCTAAAGTTACACTATATGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGAATCATATTATTTTATATTTATCTAAAGTTACACTATATGTG  295

seq1  TGTACGTATGTGTGTGTATTTATATGTGAGTATAACATATACACACATGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACGTATGTGTGTGTATTTATATGTGAGTATAACATATACACACATGT  345

seq1  ACATATATACATTATATAGTTTATACATAAACACATATATCTCATACATA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATACATTATATAGTTTATACATAAACACATATATCTCATACATA  395

seq1  TACATACATCTTTTTTTCAGATTAGTAATTTTGAAATTTACATCCTGATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACATCTTTTTTTCAGATTAGTAATTTTGAAATTTACATCCTGATT  445

seq1  GCATTTCCCTTCCCTCCTATCCTCCTAGTGCCCTCTGTCTCTTCCTCTAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCCCTTCCCTCCTATCCTCCTAGTGCCCTCTGTCTCTTCCTCTAA  495

seq1  ATTCTTTAAAAATTGGCTTGCAGTATTTCAGTATTTTTGTCTATCTGTAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTAAAAATTGGCTTGCAGTATTTCAGTATTTTTGTCTATCTGTAT  545

seq1  GTATGTATGTATGTATGTATGTATGTATGTATCTATCTATCTATCTATCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTATGTATGTATGTATGTATGTATGTATCTATCTATCTATCTATCT  595

seq1  ATCTATTTTTCTATCTATCTATCTATATTTCTATCTATCTATCAGTGTGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTTTTCTATCTATCTATCTATATTTCTATCTATCTATCAGTGTGC  645

seq1  GTGTGTGTGTGTGTGTGTATGTGTGTATGCTTAGGCCAGAGACCAAGATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTATGTGTGTATGCTTAGGCCAGAGACCAAGATC  695

seq1  AATTGTCTTTCTCAGTAGTTTTCTACCTTGTGTTTTAAGACAGGGTTTTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTCTTTCTCAGTAGTTTTCTACCTTGTGTTTTAAGACAGGGTTTTT  745

seq1  CACTGAGCCTGGATCTAACTGATTCATCTAGACTAGGTTGACCAGCAAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGCCTGGATCTAACTGATTCATCTAGACTAGGTTGACCAGCAAAT  795

seq1  GCCAGGGATTTTCCTGTCTCTGCTTCTTCAGCACTGGGATGCAGGCATGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGGATTTTCCTGTCTCTGCTTCTTCAGCACTGGGATGCAGGCATGT  845

seq1  TCAGCTGCACCTGTACTGGGGTTCTGAACTCAGCTCGTCATACTTGTGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGCACCTGTACTGGGGTTCTGAACTCAGCTCGTCATACTTGTGTA  895

seq1  GAGTGATCCTACCTCTGAGCCCTGACTCCCTCACCTGCTGTGTGAATCAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGATCCTACCTCTGAGCCCTGACTCCCTCACCTGCTGTGTGAATCAG  945

seq1  ATGTTGGAGAACATATCAACCCATGGTCTTGAGACAGGGGATCTTAGAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGAGAACATATCAACCCATGGTCTTGAGACAGGGGATCTTAGAAG  995

seq1  CACAAGTATCATGGAGAATCTCTTGGTCAGGTATAAATGCTTGACCACTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTATCATGGAGAATCTCTTGGTCAGGTATAAATGCTTGACCACTA  1045

seq1  GTTCCAGGTTTGAAAATAATGGCGTGGCTGTATTCTCTGGGCTTAAGGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGGTTTGAAAATAATGGCGTGGCTGTATTCTCTGGGCTTAAGGTT  1095

seq1  ATATCTTTTCTATGCTAGGCATAGAGAAGGAATTTCTTGCTTACACTGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTTCTATGCTAGGCATAGAGAAGGAATTTCTTGCTTACACTGAA  1145

seq1  GAATTC  1153
      ||||||
seq2  GAATTC  1151

seq1: chr12_56942011_56942871
seq2: B6Ng01-042J02.g_66_917

seq1  GAATTCCAAGTGTGGTTTTTTTTTTTTAATAATATTGACGTTTTATGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTGTGGTTTTTTTTTTTTAATAATATTGACGTTTTATGAAT  50

seq1  GTAGTCATTTTTGGTGTTAAGTTCTCAAGAATTAGTGTAAAGTCAAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCATTTTTGGTGTTAAGTTCTCAAGAATTAGTGTAAAGTCAAAAAT  100

seq1  GAGTTAATTACTTCATTGACTTCATTACTTCATAGCTTTTAAGAAGATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAATTACTTCATTGACTTCATTACTTCATAGCTTTTAAGAAGATTG  150

seq1  AAAAATGGGTAAACACTAGATGCTCTAGAGACTTGGAGTTTTAACGAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGGTAAACACTAGATGCTCTAGAGACTTGGAGTTTTAACGAATT  200

seq1  TGACATTACGTTAATTCTATGGTGGTAATTATTTTGGATAAAAATTGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTACGTTAATTCTATGGTGGTAATTATTTTGGATAAAAATTGTTT  250

seq1  AATTTCTTTTAAACTGGACCTTGGATGTCCAGTTTCATATTACAACTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTTTTAAACTGGACCTTGGATGTCCAGTTTCATATTACAACTTTT  300

seq1  TTTTTTTCTGTCTGGACTAACATCAGAATTTTTTGAAACAGTTTTATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTGTCTGGACTAACATCAGAATTTTTTGAAACAGTTTTATCTT  350

seq1  TTCTGTTTGTTTTTATTTTTTGAGATAGGGTTTCATGTATCCCAGGCTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTTGTTTTTATTTTTTGAGATAGGGTTTCATGTATCCCAGGCTGG  400

seq1  CCTCAAACATGCTAAGTGGCGAATAGTCATAGCTAGTCTTAGACTCCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACATGCTAAGTGGCGAATAGTCATAGCTAGTCTTAGACTCCTAA  450

seq1  TCCTGCCTGTGCCTCCCAAGCGCTGGAATCTCAAGTGTGTGCCTCCAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGCCTGTGCCTCCCAAGCGCTGGAATCTCAAGTGTGTGCCTCCAGGC  500

seq1  CTGCCCTGAAGTTTTATCTTTGATATTTCCTTTTTTTTTTTTAACAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTGAAGTTTTATCTTTGATATTTCCTTTTTTTTTTTTAACAGAAA  550

seq1  TGGATGATGAAGATTGTGAAAGGAGAAGGATGGAGTGTTTAGATGAGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATGAAGATTGTGAAAGGAGAAGGATGGAGTGTTTAGATGAGATG  600

seq1  TCCAACCTGGAGAAGCAGTTTACAGACCTCAAAGATCAGTAAGTACTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCTGGAGAAGCAGTTTACAGACCTCAAAGATCAGTAAGTACTAAC  650

seq1  CAGATGGCCCTCGTCACTGAATCTCAGTGGCATCAGTTTTACCAGCACAG  700
      |||||||||||||||||||||||||||||||||||| ||||| |||||||
seq2  CAGATGGCCCTCGTCACTGAATCTCAGTGGCATCAGATTTACAAGCACAG  700

seq1  GAGCAATTACAGCGTTTCTGCTGTGTTTCCTTTTGTGTTTTATGGGAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATTACAGCGTTTCTGCTGTGTTTCCTTTTGTGTTTTATGGGAACT  750

seq1  GGCTGATCTGGCCAGGAGGCTTCAGTTATTGTTTACCCGCTAGAGACCTC  800
      | ||||||||| ||||| ||||||||||||||||||||||||||||||||
seq2  GACTGATCTGGACAGGA-GCTTCAGTTATTGTTTACCCGCTAGAGACCTC  799

seq1  ATTAGCTCAACAGAGTTTTGAGGCCAGTGAGGTTTTGGGGGTGGATGGAG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  ATTAGCTCAACAGAGTTTTGAGGCCACTGAGGTTTTGGGGGTGGATGGAC  849

seq1  TAGGTGACTTG  861
      | |        
seq2  TTG--------  852