BAC Information

Click to search

BAC

Clone NameB6Ng01-042M10
Chromosome12 (Build37)
Map Location 104,196,424 - 104,196,701
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga, Itpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7, EG634678, Cox8c
Downstream gene9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042M10.bB6Ng01-042M10.g
ACCDH869044DH869045
length8121,142
definitionDH869044|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M10, 5' end.DH869045|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M10, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcattttagataaggtaacccatttttacttgtattattaggtt
tcttaatatctggttccttgagtttcttatatattagctctcagtcagat
ttgggcttgatgaaaatattttcccattctgtgggttactgttttgccac
tcggtgtttttctctgccttacagaatcttttctgcttcacagggaacca
tgacagtttcagtattttatatgatggattacatttctgattgttgtatg
ttgaaccacctctgcatctttgggaggagatgtaccttatcgtggtgtgt
gatataatgtctttttgttttgtgagtattttattatgagtatatttgca
ttaatgttcatgagggaaattgttctgtgatatactttctttgttaaata
tttgtgtggtttaggtgtcaggataaatgttgcctcataaaatgaacttg
gaaatattctgtctgtttatattttgtgaatggattccagtagtattggc
attatcagtcctttagcagtctgataagaatttgtataatttaatcttta
atgctgttcattttgtttacaaatgccagtacccttgaatttatggcata
gatgctaaaaattaaaagattacattggtgaaaaatttttttgatgaata
tgaagtgtctttttgtgtttgcatcaattaattttggtttgaaatctctc
tctctctctctctctctctctctctctctctctctctctctctctcactc
tctctctactcacttatatatatactagtttatatgtgcatagctatagt
gtggagtctata
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacaaccttaatcatccaggaaatgcaaatcaaaacaacactgagat
tccacttcactccagtcagaatggctaagatcaaaaactcaggtgacagc
atatactggcgaggatgtggagaaaggggaacactcttccattgttggtg
ggattgcaagcttgtacaaccactctggaaatcaatctggcggttcctca
gaaaatttgacatagtactacaggaggatcccgcaatacctctcctgggc
atatatccagaagatgtcccaactggtaagaagaacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gaatactactcagctatttaaaaaatgaatttatgaaattcctaggcaaa
tggatggacctggagggtatcatcctgagtgaagtaacccaatcacaaag
gaacttgcacaatatgtactcactgataagtggatattagcccagaaact
taggatacccaagatataatgtaaaacttgccaaaagcatgaaattcaag
aagaatgaagaccaaagtgtggacactttaccctttcttagaaatgggaa
caaaactcccatagaaggagttacagagacaaaatttggtgctgtgacga
aaggatggaccatctagtgattaccatatgcagggatccatcccataatc
agcttccaaatgctgacaccattgcatacactatcaagatttcgctgaaa
ggacccagatatagctctctcttgtgagactatgccggggcctagcaaac
acagaagtggatgatcacagtcagctattggatgggtcagatggccccta
atggaggagctagagaattacccaaggagcaaaaggaactgcaccctata
gtggaacaacaatatgactaaccagtacccgggagctcttgtctttagct
gcatatgtatcaaagatggcctagtaggccatcactgcaagaagaagccc
attggacttgcaacctttatgcctcctgtgtacaagggaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104196424_104196701
seq2: B6Ng01-042M10.b_746_856

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTC  50

seq1  AGCATGAGTTAAATTCATTTTCTACATCCATTGCAAGCATATGACATCTT  100
                    ||  | ||||| ||  ||      ||||   || | 
seq2  --------------TC--TCTCTAC-TCACTT------ATAT---ATAT-  73

seq1  TTAACTTTATTACATTTGGAAAACTTTGAGAAATTTTGAATTAATATTAA  150
         |||   ||| || || | | || |    | | | || |  ||     
seq2  ---ACTAGTTTATATGTGCATAGCTAT----AGTGTGGAGTCTAT-----  111

seq1  CTAGTTGGTTGGAGGAGGTAGAGTAGGGGTGAGCTCTAGTCAGGATTTGG  200
                                                        
seq2  --------------------------------------------------  111

seq1  CAATAACCTTCTGTTTAGTATTGCAAGGGAGTTGGGGACACTTTGTCTTG  250
                                                        
seq2  --------------------------------------------------  111

seq1  CTCTGCAGCACAATAGTGTGGAGTCTAT  278
                                  
seq2  ----------------------------  111