BAC Information

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BAC

Clone NameB6Ng01-043D15
Chromosome12 (Build37)
Map Location 18,142,080 - 18,256,411
singlet/doubletdoublet
Overlap geneLOC100042573, LOC668539, LOC100043324, LOC636282
Upstream geneKcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297
Downstream geneEG632781, LOC668541, LOC673160, 5730507C01Rik, EG668553, LOC668558, LOC100042641, LOC668568, LOC668570, EG668413, LOC671401
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043D15.bB6Ng01-043D15.g
ACCDH869352DH869353
length1,1741,034
definitionDH869352|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D15, 5' end.DH869353|Mus musculus domesticus DNA, BAC clone: B6Ng01-043D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,255,226 - 18,256,411)(18,142,080 - 18,143,113)
sequence
gaattctagggggctgatcaatgaattatgtattatgttcatgtcataga
ctcaacagggatagccccaaagccacaataccaagtcatggtatcagtgg
aggtagatacattgcataagcatcaagctatagaaccagcaaagatgagt
ctagggccacagcatatagtcttcaaagctggggaaaggaatccaaagcc
tcagcctaaagtcacagaaacattaaacctggacccagggtcacagaatc
aaaccatgaaacagatcaggtttactcctagttctctccaacctccacag
ccaccatctaatgaacagcaagggtgattccagatgcatcagagaaatcc
atacatgctctaaagggaaactcagtggcacgggggtcacccactggaat
gatcacagcactacaagctggtttgactgcacagtcagtggctcaagcca
aagaatctccagagttgccttctgcatcccaggttcaagtcagagactcc
ataggaatgacaccacagcaagacacagaggatgtgtcattgactccaaa
acttccccctcgggtcatggactcttcagagttcaccccatggcaccaat
acttagactgtttagaggtgagtccaagataaaatcacaaacagagaatc
tatggagttgacctctgatacctggccacaaaggaagaatcctacagaga
ggacaccatcacctcatcaaataacagaatctatgataacagccccaggg
gcaccagatcaagggacagtatctatagggatgacccaatggcaccaact
tacagaatctgaagtagtgccagctactctaaaactttgagaagtggagt
gtttgggggaaaacaaccccacaacctaaggatatggagtcagtgaactt
acccacgagttacagaatgtaaactctaagaacctagttccagatccaag
attgcaaagtatgaatcccgtggacatacccaaagatttagttccagata
aggtaaaagctgacactgagaccaactgtggtatctatagatctggctcc
agacacatcatcagaaggatacagtctgaggaataacctccataccacaa
tggcaaccgagaaacctgttccatcagtccgagtcccagctcagatgtga
atctggccactgaagtgaaccaca
gaattcccattcggcttgtaccatggtcaactccctatgcaaaacacctg
cctttacccctggcttcttaaggctgtgagagggcgcacacacagaacat
ggtccctatcattgcatccccaactaactgtccctacatcttttccctct
aaagtgccctggaggatttcactgtcctgtagggggcgagctaccaacaa
tgtcttcactggcccttcactgaagttctggtggagaattcagggggttc
tgaggctaatggtgggattggggagcaaaagggtgggttcctctccagcc
gggaagccagtatccccggttccactccacgccctctgcgtaatgttgct
agaggtcatggcgggtgctgggtgggagccgggcaccgcagctcgggaga
gggcgcgccctcgaaccccagcacctcccgaaggcagactcaaggcggcg
tcccacaggcactgacaggtccggagcgcacatcgcccttttttctgtgg
cctccgcttcctggcagcgcggtggcggcaagtgccccgattggcggcca
gacctttgccccgccccgccccgcccctccctggcggacaccgctcttcc
ccgccccccccccgtcccgcctctctccgcgggaggccttcgggccagcg
gcttggtggcgcgcagtttaccctggctgtgcgcgcccgcagagaacggg
gcatcggcgtctccgggagcacagcgggcagagctgcggactgcacgcgc
ccctgctgccaccggccgtcccgcggtggctcccgcgccctgcggcgact
tccgagcccgcgctcctctttgtccgaatccccgagcggcggctgaggct
gggtccgagcccgcgtcctgggcgactgaggcggcgacagtccgcgcccc
ggcgccctggcgatgtccgactcgatctccgtgtcggaattcgtggctga
gactcttgaggactacaagcgccaacggcttctaccttcaccacgcgctc
ggcccagtgccaggaataccgtggcggccatcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_18255226_18256411
seq2: B6Ng01-043D15.b_43_1216 (reverse)

seq1  TGTGGTTCAACTGTCAGTTGGCCAGATTTCACATCTTGAAGCTGAGACTC  50
      |||||||| ||| |||| |||||||| |||||||||   ||||| |||||
seq2  TGTGGTTC-ACT-TCAG-TGGCCAGA-TTCACATCT--GAGCTGGGACTC  44

seq1  TGGGACTGATGGGACAGGTTTCTCGGTTTGCAATTGTGGTATGGAGGTTA  100
        |||||||||| ||||||||||||| |||| ||||||||||||||||| 
seq2  --GGACTGATGGAACAGGTTTCTCGG-TTGCCATTGTGGTATGGAGGTT-  90

seq1  ATTCCTCAGACTGTATCC-TCTGATGATGTTGGTCTGGAGCCAGATCTAT  149
      |||||||||||||||||| |||||||||||  ||||||||||||||||||
seq2  ATTCCTCAGACTGTATCCTTCTGATGATGT--GTCTGGAGCCAGATCTAT  138

seq1  AGATACCACAGTTGGTCTCAGTGGTCAGCTTTTACCTTATCTGGAACTAA  199
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGATACCACAGTTGGTCTCAGT-GTCAGCTTTTACCTTATCTGGAACTAA  187

seq1  ATCTTTGGGTATGTCCACGGGATTCATACTTTGCAATCTTGGATCTGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGGGTATGTCCACGGGATTCATACTTTGCAATCTTGGATCTGGAA  237

seq1  CTAGGTTCTTAGAGTTTACATTCTGTAACTCGTGGGTAAGTTCACTGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTCTTAGAGTTTACATTCTGTAACTCGTGGGTAAGTTCACTGACT  287

seq1  CCATATCCTTAGGTTGTGGGGTTGTTTTCCCCCAAACACTCCACTTCTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTTAGGTTGTGGGGTTGTTTTCCCCCAAACACTCCACTTCTCA  337

seq1  AAGTTTTAGAGTAGCTGGCACTACTTCAGATTCTGTAAGTTGGTGCCATT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTTAGAGTAGCTGGCACTACTTCAGATTCTGTAAGTTGGTGCCATT  387

seq1  GGGTCATCCCTATAGATACTGTCCCTTGATCTGGTGCCCCTGGGGCTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCATCCCTATAGATACTGTCCCTTGATCTGGTGCCCCTGGGGCTGTT  437

seq1  ATCATAGATTCTGTTATTTGATGAGGTGATGGTGTCCTCTCTGTAGGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGATTCTGTTATTTGATGAGGTGATGGTGTCCTCTCTGTAGGATT  487

seq1  CTTCCTTTGTGGCCAGGTATCAGAGGTCAACTCCATAGATTCTCTGTTTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTTGTGGCCAGGTATCAGAGGTCAACTCCATAGATTCTCTGTTTG  537

seq1  TGATTTTATCTTGGACTCACCTCTAAACAGTCTAAGTATTGGTGCCATGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATCTTGGACTCACCTCTAAACAGTCTAAGTATTGGTGCCATGG  587

seq1  GGTGAACTCTGAAGAGTCCATGACCCGAGGGGGAAGTTTTGGAGTCAATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAACTCTGAAGAGTCCATGACCCGAGGGGGAAGTTTTGGAGTCAATG  637

seq1  ACACATCCTCTGTGTCTTGCTGTGGTGTCATTCCTATGGAGTCTCTGACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCCTCTGTGTCTTGCTGTGGTGTCATTCCTATGGAGTCTCTGACT  687

seq1  TGAACCTGGGATGCAGAAGGCAACTCTGGAGATTCTTTGGCTTGAGCCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGGATGCAGAAGGCAACTCTGGAGATTCTTTGGCTTGAGCCAC  737

seq1  TGACTGTGCAGTCAAACCAGCTTGTAGTGCTGTGATCATTCCAGTGGGTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCAGTCAAACCAGCTTGTAGTGCTGTGATCATTCCAGTGGGTG  787

seq1  ACCCCCGTGCCACTGAGTTTCCCTTTAGAGCATGTATGGATTTCTCTGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCGTGCCACTGAGTTTCCCTTTAGAGCATGTATGGATTTCTCTGAT  837

seq1  GCATCTGGAATCACCCTTGCTGTTCATTAGATGGTGGCTGTGGAGGTTGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTGGAATCACCCTTGCTGTTCATTAGATGGTGGCTGTGGAGGTTGG  887

seq1  AGAGAACTAGGAGTAAACCTGATCTGTTTCATGGTTTGATTCTGTGACCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTAGGAGTAAACCTGATCTGTTTCATGGTTTGATTCTGTGACCC  937

seq1  TGGGTCCAGGTTTAATGTTTCTGTGACTTTAGGCTGAGGCTTTGGATTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTCCAGGTTTAATGTTTCTGTGACTTTAGGCTGAGGCTTTGGATTCC  987

seq1  TTTCCCCAGCTTTGAAGACTATATGCTGTGGCCCTAGACTCATCTTTGCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCCAGCTTTGAAGACTATATGCTGTGGCCCTAGACTCATCTTTGCT  1037

seq1  GGTTCTATAGCTTGATGCTTATGCAATGTATCTACCTCCACTGATACCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTATAGCTTGATGCTTATGCAATGTATCTACCTCCACTGATACCAT  1087

seq1  GACTTGGTATTGTGGCTTTGGGGCTATCCCTGTTGAGTCTATGACATGAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGTATTGTGGCTTTGGGGCTATCCCTGTTGAGTCTATGACATGAA  1137

seq1  CATAATACATAATTCATTGATCAGCCCCCTAGAATTC  1186
      |||||||||||||||||||||||||||||||||||||
seq2  CATAATACATAATTCATTGATCAGCCCCCTAGAATTC  1174

seq1: chr12_18142080_18143113
seq2: B6Ng01-043D15.g_62_1095

seq1  GAATTCCCATTCGGCTTGTACCATGGTCAACTCCCTATGCAAAACACCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTCGGCTTGTACCATGGTCAACTCCCTATGCAAAACACCTG  50

seq1  CCTTTACCCCTGGCTTCTTAAGGCTGTGAGAGGGCGCACACACAGAACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCCCTGGCTTCTTAAGGCTGTGAGAGGGCGCACACACAGAACAT  100

seq1  GGTCCCTATCATTGCATCCCCAACTAACTGTCCCTACATCTTTTCCCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTATCATTGCATCCCCAACTAACTGTCCCTACATCTTTTCCCTCT  150

seq1  AAAGTGCCCTGGAGGATTTCACTGTCCTGTAGGGGGCGAGCTACCAACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGCCCTGGAGGATTTCACTGTCCTGTAGGGGGCGAGCTACCAACAA  200

seq1  TGTCTTCACTGGCCCTTCACTGAAGTTCTGGTGGAGAATTCAGGGGGTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCACTGGCCCTTCACTGAAGTTCTGGTGGAGAATTCAGGGGGTTC  250

seq1  TGAGGCTAATGGTGGGATTGGGGAGCAAAAGGGTGGGTTCCTCTCCAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAATGGTGGGATTGGGGAGCAAAAGGGTGGGTTCCTCTCCAGCC  300

seq1  GGGAAGCCAGTATCCCCGGTTCCACTCCACGCCCTCTGCGTAATGTTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCCAGTATCCCCGGTTCCACTCCACGCCCTCTGCGTAATGTTGCT  350

seq1  AGAGGTCATGGCGGGTGCTGGGTGGGAGCCGGGCACCGCAGCTCGGGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCATGGCGGGTGCTGGGTGGGAGCCGGGCACCGCAGCTCGGGAGA  400

seq1  GGGCGCGCCCTCGAACCCCAGCACCTCCCGAAGGCAGACTCAAGGCGGCG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGCGCCCTCGAACCCCAGCACCTCCCGAAGGCAGACTCAAGGCGGCG  450

seq1  TCCCACAGGCACTGACAGGTCCGGAGCGCACATCGCCCTTTTTTCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACAGGCACTGACAGGTCCGGAGCGCACATCGCCCTTTTTTCTGTGG  500

seq1  CCTCCGCTTCCTGGCAGCGCGGTGGCGGCAAGTGCCCCGATTGGCGGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCGCTTCCTGGCAGCGCGGTGGCGGCAAGTGCCCCGATTGGCGGCCA  550

seq1  GACCTTTGCCCCGCCCCGCCCCGCCCCTCCCTGGCGGACACCGCTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGCCCCGCCCCGCCCCGCCCCTCCCTGGCGGACACCGCTCTTCC  600

seq1  CCGCCCCCCCCCCGTCCCGCCTCTCTCCGCGGGAGGCCTTCGGGCCAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCCCCCCCCCGTCCCGCCTCTCTCCGCGGGAGGCCTTCGGGCCAGCG  650

seq1  GCTTGGTGGCGCGCAGTTTACCCTGGCTGTGCGCGCCCGCAGAGAACGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGGTGGCGCGCAGTTTACCCTGGCTGTGCGCGCCCGCAGAGAACGGG  700

seq1  GCATCGGCGTCTCCGGGAGCACAGCGGGCAGAGCTGCGGACTGCACGCGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCGGCGTCTCCGGGAGCACAGCGGGCAGAGCTGCGGACTGCACGCGC  750

seq1  CCCTGCTGCCACCGGCCGTCCCGCGGTGGCTCCCGCGCCCTGCGGCGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGCTGCCACCGGCCGTCCCGCGGTGGCTCCCGCGCCCTGCGGCGACT  800

seq1  TCCGAGCCCGCGCTCCCCTTTGTCCGAATCCCCGAGCGGCGGCTGAGGCT  850
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCGAGCCCGCGCTCCTCTTTGTCCGAATCCCCGAGCGGCGGCTGAGGCT  850

seq1  GGGTCCGAGCCCGCGTCCTGGGCGACTGAGGCGGCGACAGTCCGCGCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCGAGCCCGCGTCCTGGGCGACTGAGGCGGCGACAGTCCGCGCCCC  900

seq1  GGCGCCCTGGCGATGCCGGACTCGATCTCCGTGTCGGAATTCGTGGCTGA  950
      ||||||||||||||| | ||||||||||||||||||||||||||||||||
seq2  GGCGCCCTGGCGATGTCCGACTCGATCTCCGTGTCGGAATTCGTGGCTGA  950

seq1  GACCCTTGAGGACTACAAGGCGCCCACGGCCTCTACCTTCACCACGCGCT  1000
      ||| |||||||||||||| ||||| ||||| |||||||||||||||||||
seq2  GACTCTTGAGGACTACAA-GCGCCAACGGCTTCTACCTTCACCACGCGCT  999

seq1  CGGCCCAGTGCCAGG-ATACCGTGGCGGCCATCGA  1034
      ||||||||||||||| |||||||||||||||||||
seq2  CGGCCCAGTGCCAGGAATACCGTGGCGGCCATCGA  1034