BAC Information

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BAC

Clone NameB6Ng01-043J13
Chromosome12 (Build37)
Map Location 56,444,937 - 56,562,384
singlet/doubletdoublet
Overlap gene1110008L16Rik, LOC665366, Psma6, LOC100039871
Upstream geneEG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik, Eapp, LOC673582, LOC100039735, LOC100039764, Snx6, Cfl2, Baz1a, LOC100039804, 2700097O09Rik, LOC665144, EG665137, Srp54, 1700047I17Rik, LOC100039815, LOC665155, LOC100039830, Ppp2r3c, LOC673593
Downstream geneNfkbia, Aldoa-ps1, Insm2, Garnl1, Brms1l, LOC100039915, LOC382600, LOC382601, Mbip, EG621837
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043J13.bB6Ng01-043J13.g
ACCDH869609DH869610
length321717
definitionDH869609|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J13, 5' end.DH869610|Mus musculus domesticus DNA, BAC clone: B6Ng01-043J13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,444,937 - 56,445,257)(56,561,669 - 56,562,384)
sequence
taagtctctatgactcattcttgacttatgttttcacaactttgatttgt
aagaaatgagtttttttttcatagtcaccaagggttcattaatgcttagt
gacgtgaggctgctttgcagagacaggagcaacatgcagcctttcactcg
agaaacagaagaaatggaaaggttcttacgccacagcttctcccatgatc
ctctgtgccccactcgccgcgcagcatctgtcctaatgctcttgctcccc
gctcctgcagcctgcgcgttggatggcccgtgttcctaagcctctctaat
agagggtgtgggggtgggggt
gaattcttaccagcatgttgctgcccactggaagagcctgatgcccagag
agcggatttcagtgtcttctcagcctggccctccacctccccctcgggag
gaaggggctttcctggccctgtagacgtgtataccaggcatccctcttct
gcaatccacaagcatgtgaaccttactgggatgagagtctccacaaagac
cagcaccacctacttgtgaagtaaagcttatgtttatacaagtaacagta
gctagaacatctctgtgccaggctcggttccaagcagtttgcttgtatcg
acttacttctcatttaggtgattttttttcccctggtgagagatgttttt
tacatgtgcactcaggccctcctacttgcaagggaggggactttacagac
tgggacacctccccagtccatatcacgcctatttttataggaaaaaaagt
gtcatgatatttgggttgttgatattttgggcaaggcttcatattatagc
ttaggctggtctccgtcatggcgatcattttgcctcagcttcctgactcc
ggggttacaggggttttgtttgtttggttgggtttttttgttatttttgg
aaatactagtgattgcatctaggacctggctgtgttagagaggctcttta
tcactgagctgtatgtagccttagctcacaactggtttggttttttgttg
tggtagtggtggtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_56444937_56445257
seq2: B6Ng01-043J13.b_50_370

seq1  TAAGTCTCTATGACTCATTCTTGACTTATGTTTTCACAACTTTGATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTCTATGACTCATTCTTGACTTATGTTTTCACAACTTTGATTTGT  50

seq1  AAGAAATGAGTTTTTTTTTCATAGTCACCAAGGGTTCATTAATGCTTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGAGTTTTTTTTTCATAGTCACCAAGGGTTCATTAATGCTTAGT  100

seq1  GACGTGAGGCTGCTTTGCAGAGACAGGAGCAACATGCAGCCTTTCACTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGTGAGGCTGCTTTGCAGAGACAGGAGCAACATGCAGCCTTTCACTCG  150

seq1  AGAAACAGAAGAAATGGAAAGGTTCTTACGCCACAGCTTCTCCCATGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACAGAAGAAATGGAAAGGTTCTTACGCCACAGCTTCTCCCATGATC  200

seq1  CTCTGTGCCCCACTCGCCGCGCAGCATCTGTCCTAATGCTCTTGCTCCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGCCCCACTCGCCGCGCAGCATCTGTCCTAATGCTCTTGCTCCCC  250

seq1  GCTCCTGCAGCCTGCGCGTTGGATGGCCCGTGTTCCTAAGCCTCTCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGCAGCCTGCGCGTTGGATGGCCCGTGTTCCTAAGCCTCTCTAAT  300

seq1  AGAGGGTGTGGGGGTGGGGGT  321
      |||||||||||||||||||||
seq2  AGAGGGTGTGGGGGTGGGGGT  321

seq1: chr12_56561669_56562384
seq2: B6Ng01-043J13.g_66_782 (reverse)

seq1  CACCACCACCACTACCACAAC-AAAAACCAAACCAGTTGTGAGCTAAGGC  49
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CACCACCACCACTACCACAACAAAAAACCAAACCAGTTGTGAGCTAAGGC  50

seq1  TACATACAGCTCAGTGATAAAGAGCCTCTCTAACACAGCCAGGTCCTAGA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATACAGCTCAGTGATAAAGAGCCTCTCTAACACAGCCAGGTCCTAGA  100

seq1  TGCAATCACTAGTATTTCCAAAAATAACAAAAAAACCCAACCAAACAAAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCACTAGTATTTCCAAAAATAACAAAAAAACCCAACCAAACAAAC  150

seq1  AAAACCCCTGTAACCCCGGAGTCAGGAAGCTGAGGCAAAATGATCGCCAT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCCTGTAACCCCGGAGTCAGGAAGCTGAGGCAAAATGATCGCCAT  200

seq1  GACGGAGACCAGCCTAAGCTATAATATGAAGCCTTGCCCAAAATATCAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGAGACCAGCCTAAGCTATAATATGAAGCCTTGCCCAAAATATCAAC  250

seq1  AACCCAAATATCATGACACTTTTTTTCCTATAAAAATAGGCGTGATATGG  299
      ||||||||||||||||||||||||||                 |||||||
seq2  AACCCAAATATCATGACACTTTTTTTNNNNNNNNNNNNNNNNNGATATGG  300

seq1  ACTGGGGAGGTGTCCCAGTCTGTAAAGTCCCCTCCCTTGCAAGTAGGAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGAGGTGTCCCAGTCTGTAAAGTCCCCTCCCTTGCAAGTAGGAGG  350

seq1  GCCTGAGTGCACATGTAAAAAACATCTCTCACCAGGGGAAAAAAAATCAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAGTGCACATGTAAAAAACATCTCTCACCAGGGGAAAAAAAATCAC  400

seq1  CTAAATGAGAAGTAAGTCGATACAAGCAAACTGCTTGGAACCGAGCCTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGAGAAGTAAGTCGATACAAGCAAACTGCTTGGAACCGAGCCTGG  450

seq1  CACAGAGATGTTCTAGCTACTGTTACTTGTATAAACATAAGCTTTACTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGATGTTCTAGCTACTGTTACTTGTATAAACATAAGCTTTACTTC  500

seq1  ACAAGTAGGTGGTGCTGGTCTTTGTGGAGACTCTCATCCCAGTAAGGTTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGTAGGTGGTGCTGGTCTTTGTGGAGACTCTCATCCCAGTAAGGTTC  550

seq1  ACATGCTTGTGGATTGCAGAAGAGGGATGCCTGGTATACACGTCTACAGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCTTGTGGATTGCAGAAGAGGGATGCCTGGTATACACGTCTACAGG  600

seq1  GCCAGGAAAGCCCCTTCCTCCCGAGGGGGAGGTGGAGGGCCAGGCTGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAAGCCCCTTCCTCCCGAGGGGGAGGTGGAGGGCCAGGCTGAGA  650

seq1  AGACACTGAAATCCGCTCTCTGGGCATCAGGCTCTTCCAGTGGGCAGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTGAAATCCGCTCTCTGGGCATCAGGCTCTTCCAGTGGGCAGCAA  700

seq1  CATGCTGGTAAGAATTC  716
      |||||||||||||||||
seq2  CATGCTGGTAAGAATTC  717