BAC Information

Click to search

BAC

Clone NameB6Ng01-044B08
Chromosome12 (Build37)
Map Location 75,307,459 - 75,430,901
singlet/doubletdoublet
Overlap geneSyt16, 1700086L19Rik, Dbpht2
Upstream geneMnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1
Downstream geneLOC671971, Kcnh5, Rhoj
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044B08.bB6Ng01-044B08.g
ACCDH869942DH869943
length580145
definitionDH869942|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B08, 5' end.DH869943|Mus musculus domesticus DNA, BAC clone: B6Ng01-044B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,430,322 - 75,430,901)(75,307,459 - 75,307,603)
sequence
gaattcctgctctaattcggaggacagagcaccaaggttacaaacaggag
caacagtatctcctccctggcatgggaaaagaacgctcctggaagatcca
gtctgtggagccagccactgtgaagtaagccacatggcctaaatttgtat
cccataagatggctacttgcacccgactgtcccttcgcaccctccacttc
ctgaagcttccatctgggtgtgcatttgcttattcagccagtgagtgcgc
acggtgctgagcagtgtgctgcccagtctgagtttaagtgcttatatgtt
ttgcttatatgttatggtttctgattttgctgctaatgggattactgttg
tgtgagaatatatgtatcttagcacctgcatgtggcttttagtacttttt
cctggggtctggtttggtttttttttgttgttgttgttgtttgtttgttt
gtttttgttttgttttttcctgtttgctgtgtccttttctgagtttttta
caatctcattttttaatgctcatttgtaatctaatgagagatttttaaaa
aggtgtatatttgtgtgggtggggatatag
tccttcccctaaatgtatccctttccaaaggtcatttttagtttcctagg
ttgtacctcttctccaactcaagttgaacatgtgaaatgaaagatttgaa
gctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75430322_75430901
seq2: B6Ng01-044B08.b_41_620 (reverse)

seq1  CTATATCCCCACCCACACAAATATACACCTTTTTAAAAATCTCTCATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATCCCCACCCACACAAATATACACCTTTTTAAAAATCTCTCATTAG  50

seq1  ATTACAAATGAGCATTAAAAAATGAGATTGTAAAAAACTCAGAAAAGGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAATGAGCATTAAAAAATGAGATTGTAAAAAACTCAGAAAAGGAC  100

seq1  ACAGCAAACAGGAAAAAACAAAACAAAAACAAACAAACAAACAACAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAACAGGAAAAAACAAAACAAAAACAAACAAACAAACAACAACAA  150

seq1  CAACAAAAAAAAACCAAACCAGACCCCAGGAAAAAGTACTAAAAGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAAAAAAAACCAAACCAGACCCCAGGAAAAAGTACTAAAAGCCACA  200

seq1  TGCAGGTGCTAAGATACATATATTCTCACACAACAGTAATCCCATTAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGTGCTAAGATACATATATTCTCACACAACAGTAATCCCATTAGCA  250

seq1  GCAAAATCAGAAACCATAACATATAAGCAAAACATATAAGCACTTAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATCAGAAACCATAACATATAAGCAAAACATATAAGCACTTAAACT  300

seq1  CAGACTGGGCAGCACACTGCTCAGCACCGTGCGCACTCACTGGCTGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTGGGCAGCACACTGCTCAGCACCGTGCGCACTCACTGGCTGAATA  350

seq1  AGCAAATGCACACCCAGATGGAAGCTTCAGGAAGTGGAGGGTGCGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGCACACCCAGATGGAAGCTTCAGGAAGTGGAGGGTGCGAAGGG  400

seq1  ACAGTCGGGTGCAAGTAGCCATCTTATGGGATACAAATTTAGGCCATGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCGGGTGCAAGTAGCCATCTTATGGGATACAAATTTAGGCCATGTG  450

seq1  GCTTACTTCACAGTGGCTGGCTCCACAGACTGGATCTTCCAGGAGCGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTTCACAGTGGCTGGCTCCACAGACTGGATCTTCCAGGAGCGTTC  500

seq1  TTTTCCCATGCCAGGGAGGAGATACTGTTGCTCCTGTTTGTAACCTTGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATGCCAGGGAGGAGATACTGTTGCTCCTGTTTGTAACCTTGGT  550

seq1  GCTCTGTCCTCCGAATTAGAGCAGGAATTC  580
      ||||||||||||||||||||||||||||||
seq2  GCTCTGTCCTCCGAATTAGAGCAGGAATTC  580

seq1: chr12_75307459_75307603
seq2: B6Ng01-044B08.g_74_218

seq1  TCCTTCCCCTAAATGTATCCCTTTCCAAAGGTCATTTTTAGTTTCCTAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCCCCTAAATGTATCCCTTTCCAAAGGTCATTTTTAGTTTCCTAGG  50

seq1  TTGTACCTCTTCTCCAACTCAAGTTGAACATGTGAAATGAAAGATTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACCTCTTCTCCAACTCAAGTTGAACATGTGAAATGAAAGATTTGAA  100

seq1  GCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA  145
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA  145