BAC Information

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BAC

Clone NameB6Ng01-044L02
Chromosome12 (Build37)
Map Location 75,336,476 - 75,337,507
singlet/doubletsinglet
Overlap geneSyt16
Upstream geneMnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1
Downstream gene1700086L19Rik, Dbpht2, LOC671971, Kcnh5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L02.bB6Ng01-044L02.g
ACCDH870374DH870375
length8031,031
definitionDH870374|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L02, 5' end.DH870375|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L02, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctctgagccccatttttaatggggttacctgattt
tctggagtccaccttcttgagttctttatatatattagatattagtcccc
tatctgatttaggataagtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcaattttat
gaggtcccatttgtcgattcttgatcttatagcacaagccattgctgttc
tattcaggaatttttcccctgtacccactctggaagtcagtctggtggtt
cctcagaaaattggacatagtactactggaggatactgcaatacctctcc
tgggcatatatccataagatgttccaactgataagaaggacacatgctcc
actatgttcatagcagccttatttataatagccagaagctggaaagaacc
cagatgcccctcaacggaggaatggatacagaaaatgtggtacatttaca
caatggagtactattcggctattaaaaagaatgatgtccacacttcagtc
ttcatttttcttgagtttcatgtgtttagcaaattgtatcttatatcttg
ggtatcctaggtttttgggctaatatccacttatcagtgagtacatattg
tgtgagttccttttgtgaatgtgttacctcactcaggatgatgccctcca
ggtccatccacccctccttagaaagtgcgaacaaaacatccatggaagga
gttacagagacaaagtttggagctgatactgaaaggatgggaccatgtat
ttt
gaattcacagctttcagctggcaaagagaggtcatgggtgagttctacaa
ttttggagctagcgacggaaaagatgagcttgccagcaggcaggtctggg
aagacagcaggtggcatcgatttagagaggcaaaaaaatcaggatttcca
ggttggagatgttcaggcggaattagaactttagatgggtagaccttttt
ggaacacgtctttgtcctcctccatggctgtgtgtgccctccctttgtct
tgactatctgcccacacacgtcaccagtcttgttctctctattgcttgag
ctatgtgggttttttttcccttcgtcatctcaaaacattctcctggtcat
tctaagcaagctgtatcctctgaaactttaccaggggctgcctatcaaca
ccctcaatcactagtctgtagaataatagcagtctgcttgcttaggtagt
catttggcctctacagtccatgacaggatgcatttccaatgaatgactga
ttggttgactaacccatagctgtctgatcttttgacacatgttcataaaa
agagatcttcacattacatgatagttgatctacaacagtgataaggctgg
ctacctcccagacctccaagctctgcaagtcctgggctaggaagaggagt
aagatgcatggtaagaaaacagccatacaactggaaggtcccctctgtgg
caggcattcagggttgctaatgcaggatggttctgaatccttgctaagag
ccttgccttgaaagttcagaaatacccacctgcaattcctgcacttggga
agctaaggtaagggcattgtgtgttggagggcattctaggtacagattga
gcttgaggccagcctggggctatgtagtaagattcttgtttcaagaaaca
gaaacaacaaaagtttcatgtctatgaatcatcctaatgcatactggggt
agggatggaaggcatatggatgcttacccactaattcaaaagtccggcca
cctcccaggtttgccatgtcctcctccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_75336476_75337507
seq2: B6Ng01-044L02.g_68_1098 (reverse)

seq1  GTGGGG-GGAGGGCATGGCAAAACCTGGGGAGGTGGCTGGGCTTTTGACT  49
      |||||| ||||| |||||| |||||| |||||||||| || ||||||| |
seq2  GTGGGGAGGAGGACATGGC-AAACCT-GGGAGGTGGCCGGACTTTTGAAT  48

seq1  TAGTGGGTAAGCATCCATATGCCTTCCATCCCTA-CCCAGTATGCATTAG  98
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TAGTGGGTAAGCATCCATATGCCTTCCATCCCTACCCCAGTATGCATTAG  98

seq1  GATGATTCATAGACATGATACTTTTGTTGTTTCTGTTTTCTTGAAACAAG  148
      |||||||||||||||||| |||||||||||||||| ||||||||||||||
seq2  GATGATTCATAGACATGAAACTTTTGTTGTTTCTG-TTTCTTGAAACAAG  147

seq1  AATCTTACTACATAG-CCCAGGCTGGCCTCAAGCTCATTCTGTAACCTAG  197
      ||||||||||||||| ||||||||||||||||||||| ||||| ||||||
seq2  AATCTTACTACATAGCCCCAGGCTGGCCTCAAGCTCAATCTGT-ACCTAG  196

seq1  AATGCCCTCCAACACACAATGCCCTTACCTTAGCTTCCCAAGTGCAGGAA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCTCCAACACACAATGCCCTTACCTTAGCTTCCCAAGTGCAGGAA  246

seq1  TTGCAGGTGGGTATTTCTGAACTTTCAAGGCAAGGCTCTTAGCAAGGATT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGTGGGTATTTCTGAACTTTCAAGGCAAGGCTCTTAGCAAGGATT  296

seq1  CAGAACCATCCTGCATTAGCAACCCTGAATGCCTGCCACAGAGGGGACCT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCATCCTGCATTAGCAACCCTGAATGCCTGCCACAGAGGGGACCT  346

seq1  TCCAGTTGTATGGCTGTTTTCTTACCATGCATCTTACTCCTCTTCCTAGC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTGTATGGCTGTTTTCTTACCATGCATCTTACTCCTCTTCCTAGC  396

seq1  CCAGGACTTGCAGAGCTTGGAGGTCTGGGAGGTAGCCAGCCTTATCACTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACTTGCAGAGCTTGGAGGTCTGGGAGGTAGCCAGCCTTATCACTG  446

seq1  TTGTAGATCAACTATCATGTAATGTGAAGATCTCTTTTTATGAACATGTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGATCAACTATCATGTAATGTGAAGATCTCTTTTTATGAACATGTG  496

seq1  TCAAAAGATCAGACAGCTATGGGTTAGTCAACCAATCAGTCATTCATTGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATCAGACAGCTATGGGTTAGTCAACCAATCAGTCATTCATTGG  546

seq1  AAATGCATCCTGTCATGGACTGTAGAGGCCAAATGACTACCTAAGCAAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCATCCTGTCATGGACTGTAGAGGCCAAATGACTACCTAAGCAAGC  596

seq1  AGACTGCTATTATTCTACAGACTAGTGATTGAGGGTGTTGATAGGCAGCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCTATTATTCTACAGACTAGTGATTGAGGGTGTTGATAGGCAGCC  646

seq1  CCTGGTAAAGTTTCAGAGGATACAGCTTGCTTAGAATGACCAGGAGAATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTAAAGTTTCAGAGGATACAGCTTGCTTAGAATGACCAGGAGAATG  696

seq1  TTTTGAGATGACGAAGGGAAAAAAAACCCACATAGCTCAAGCAATAGAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGATGACGAAGGGAAAAAAAACCCACATAGCTCAAGCAATAGAGA  746

seq1  GAACAAGACTGGTGACGTGTGTGGGCAGATAGTCAAGACAAAGGGAGGGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAGACTGGTGACGTGTGTGGGCAGATAGTCAAGACAAAGGGAGGGC  796

seq1  ACACACAGCCATGGAGGAGGACAAAGACGTGTTCCAAAAAGGTCTACCCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGCCATGGAGGAGGACAAAGACGTGTTCCAAAAAGGTCTACCCA  846

seq1  TCTAAAGTTCTAATTCCGCCTGAACATCTCCAACCTGGAAATCCTGATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTTCTAATTCCGCCTGAACATCTCCAACCTGGAAATCCTGATTT  896

seq1  TTTTGCCTCTCTAAATCGATGCCACCTGCTGTCTTCCCAGACCTGCCTGC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTCTCTAAATCGATGCCACCTGCTGTCTTCCCAGACCTGCCTGC  946

seq1  TGGCAAGCTCATCTTTTCCGTCGCTAGCTCCAAAATTGTAGAACTCACCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCTCATCTTTTCCGTCGCTAGCTCCAAAATTGTAGAACTCACCC  996

seq1  ATGACCTCTCTTTGCCAGCTGAAAGCTGTGAATTC  1032
      |||||||||||||||||||||||||||||||||||
seq2  ATGACCTCTCTTTGCCAGCTGAAAGCTGTGAATTC  1031