BAC Information

Click to search

BAC

Clone NameB6Ng01-044L08
Chromosome12 (Build37)
Map Location 90,675,650 - 90,790,875
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneAdck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044L08.bB6Ng01-044L08.g
ACCDH870384DH870385
length6241,219
definitionDH870384|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L08, 5' end.DH870385|Mus musculus domesticus DNA, BAC clone: B6Ng01-044L08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,675,650 - 90,676,273)(90,789,635 - 90,790,875)
sequence
gaattctgattttgtacaacttaaagtttaacagacctgctgggtgtggt
ggcgcatgcctttcatcccagcacttgggaagcagaggaaggcagatttc
tgagttccaggccagcctgggaactacaaagtgagttccaggacagccag
ggctacagagaaaccctgtctggaaaaccaaaaccaaaaccaaaacaaaa
caaaaaagtttaacagaccttcaaaatgtttttttttctatttctagggg
aaaaatgatactttcttctttgaagatgtacagaattgttataaataaat
aaataaataaataaatacatggcttagcattctttgcttgttccctaacc
cacatctgtttgctttcttaggagtttttcataaaatgtataaagtttat
ataaaattattcttagatgcttagcttttgttggaaaaatcaccctaaat
tttcatgaactgaattttaaactattctgtgaaataacttgcgaaataat
tacacagttgggcataagaaagtgccaggtgagatcactgatacaactga
caggacccttcacagtccatttggaaagcgaacctctctctctctctctc
tctctctctctctctctctctctc
gaattcttacagccaactggaaattgcagttaaagggaagaaggagtaga
aagcgagaaacctaaaatgagagtacacatccctcaagcctttgctacat
aaaatttgggggtccagaattctataatatttgcttaaggtcaaaatttt
cttatactgcaggggagattatctatacactccaagggtcaaaactgtgt
tcccataaagatgaaataatgtacatatttcaaagggatgcaggaactaa
tagtattgaatgcctcaagcactctaggtgaacaggtatttgaaggaaag
gtcctctgggctccctggaatttcttcatgataattgcctagagccgggc
aacagtagcagaacttagttcacatcagggagaaaaaaatgaacttggaa
tgaacttttctcagccatacacagtaaaggatattaaaattatatttcaa
tcagagaattcacaattcattttactagaaatcatacagcaaacattatc
tgatacctctaagtccaacacgtagctggaatttatgagctgtccgagta
acacaaaaaggtgtttagtgcctatatgtagatttctttaacgtataaga
tctattaattataaatccaagcatatataaaataaaaaaggaacaataat
cagatcttcaagtttataaatggaatatatttattacattttagccatcc
taccaatcctttgattattagactttactatcagcctttgggtggcttga
tattttttttaacttgagactagacctaaagcttacagtgtcaaaatcct
agtgtcaaaatgccctttagcctgtaggctcctcctattgcttttcctgg
cttcactcaatgttctttgaaactttcattcaatccactctttcacaaac
tgagccaggctttggctctttgccctgagcagatgagtgatgtttactct
ccacacagcttattctatgtcagctgccgctcacacactgccagcattct
tctaagccaggtctgatcactcatacccttgtgcaaatcatccctagtac
ttgtgatggtaattttgtcactgataaaattaggatccacggcaaaagag
tctaaatgattgattgctggctagatttctgtaagcatatctcctgaact
atctggattattttatgggaaatgagccatgcatgtgggtacgtctcatt
cttataagggaatcctgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90675650_90676273
seq2: B6Ng01-044L08.b_44_667

seq1  GAATTCTGATTTTGTACAACTTAAAGTTTAACAGACCTGCTGGGTGTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTTGTACAACTTAAAGTTTAACAGACCTGCTGGGTGTGGT  50

seq1  GGCGCATGCCTTTCATCCCAGCACTTGGGAAGCAGAGGAAGGCAGATTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCATGCCTTTCATCCCAGCACTTGGGAAGCAGAGGAAGGCAGATTTC  100

seq1  TGAGTTCCAGGCCAGCCTGGGAACTACAAAGTGAGTTCCAGGACAGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGCCAGCCTGGGAACTACAAAGTGAGTTCCAGGACAGCCAG  150

seq1  GGCTACAGAGAAACCCTGTCTGGAAAACCAAAACCAAAACCAAAACAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACAGAGAAACCCTGTCTGGAAAACCAAAACCAAAACCAAAACAAAA  200

seq1  CAAAAAAGTTTAACAGACCTTCAAAATGTTTTTTTTTCTATTTCTAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAGTTTAACAGACCTTCAAAATGTTTTTTTTTCTATTTCTAGGGG  250

seq1  AAAAATGATACTTTCTTCTTTGAAGATGTACAGAATTGTTATAAATAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGATACTTTCTTCTTTGAAGATGTACAGAATTGTTATAAATAAAT  300

seq1  AAATAAATAAATAAATACATGGCTTAGCATTCTTTGCTTGTTCCCTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAATAAATACATGGCTTAGCATTCTTTGCTTGTTCCCTAACC  350

seq1  CACATCTGTTTGCTTTCTTAGGAGTTTTTCATAAAATGTATAAAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCTGTTTGCTTTCTTAGGAGTTTTTCATAAAATGTATAAAGTTTAT  400

seq1  ATAAAATTATTCTTAGATGCTTAGCTTTTGTTGGAAAAATCACCCTAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATTATTCTTAGATGCTTAGCTTTTGTTGGAAAAATCACCCTAAAT  450

seq1  TTTCATGAACTGAATTTTAAACTATTCTGTGAAATAACTTGCGAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATGAACTGAATTTTAAACTATTCTGTGAAATAACTTGCGAAATAAT  500

seq1  TACACAGTTGGGCATAAGAAAGTGCCAGGTGAGATCACTGATACAACTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGTTGGGCATAAGAAAGTGCCAGGTGAGATCACTGATACAACTGA  550

seq1  CAGGACCCTTCACAGTCCATTTGGAAAGCGAACCTCTCTCTCTCTCTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACCCTTCACAGTCCATTTGGAAAGCGAACCTCTCTCTCTCTCTCTC  600

seq1  TCTCTCTCTCTCTCTCTCTCTCTC  624
      ||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTC  624

seq1: chr12_90789635_90790875
seq2: B6Ng01-044L08.g_66_1284 (reverse)

seq1  CACAGGATTCCCTTTATAAGGAATG-GAGCTACCCACAGTGGCCATGCCT  49
      |||||||||||| |||||| ||||| ||  |||||||| ||  |||| ||
seq2  CACAGGATTCCC-TTATAA-GAATGAGACGTACCCACA-TG--CATGGCT  45

seq1  TCTATCTTCACTAAAATAATCAGGATAGTTTCCCAGAGATATGCCTACAG  99
         || | |  ||||||||||  |||||||  |  ||||||||| |||| 
seq2  --CATTTCCCATAAAATAATCCAGATAGTT--CAGGAGATATGCTTACA-  90

seq1  GAAATCTAGCCCAGACAATCCATCAATTAGACTCTTTTGGCCGGTGATTC  149
      ||||||||| |||| ||||| |||| |||||||||||| ||||  ||| |
seq2  GAAATCTAG-CCAG-CAATCAATCATTTAGACTCTTTT-GCCGTGGATCC  137

seq1  TAGATTGTATCAAGTTGACAAAATTAACCATCACAAGTACTAAGGGATGA  199
      || ||| |||||   |||||||||| ||||||||||||||| ||||||||
seq2  TA-ATTTTATCA--GTGACAAAATT-ACCATCACAAGTACT-AGGGATGA  182

seq1  TTTTGCACAAGGGTATGAGTTGATCAAGACCTGGCTTAGAAGAATTGCTG  249
       |||||||||||||||||| ||||| |||||||||||||||||| |||||
seq2  -TTTGCACAAGGGTATGAG-TGATC-AGACCTGGCTTAGAAGAA-TGCTG  228

seq1  GCAGTGTGTGAGCGGCAGCTGAACATAGAATAAGCTGTGTGGAGAGTAAA  299
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCAGTGTGTGAGCGGCAGCTG-ACATAGAATAAGCTGTGTGGAGAGTAAA  277

seq1  CATCACTCATCTGCTCAGGGCAAAGAGCCAAAGCCTGGCTCAGTTTGTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACTCATCTGCTCAGGGCAAAGAGCCAAAGCCTGGCTCAGTTTGTGA  327

seq1  AAGAGTGGATTGAATGAAAGTTTCAAAGAACATTGAGTGAAGCCAGGAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTGGATTGAATGAAAGTTTCAAAGAACATTGAGTGAAGCCAGGAAA  377

seq1  AGCAATAGGAGGAGCCTACAGGCTAAAGGGCATTTTGACACTAGGATTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATAGGAGGAGCCTACAGGCTAAAGGGCATTTTGACACTAGGATTTT  427

seq1  GACACTGTAAGCTTTAGGTCTAGTCTCAAGTTAAAAAAAATATCAAGCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACTGTAAGCTTTAGGTCTAGTCTCAAGTTAAAAAAAATATCAAGCCA  477

seq1  CCCAAAGGCTGATAGTAAAGTCTAATAATCAAAGGATTGGTAGGATGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGCTGATAGTAAAGTCTAATAATCAAAGGATTGGTAGGATGGCT  527

seq1  AAAATGTAATAAATATATTCCATTTATAAACTTGAAGATCTGATTATTGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTAATAAATATATTCCATTTATAAACTTGAAGATCTGATTATTGT  577

seq1  TCCTTTTTTATTTTATATATGCTTGGATTTATAATTAATAGATCTTATAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTTATTTTATATATGCTTGGATTTATAATTAATAGATCTTATAC  627

seq1  GTTAAAGAAATCTACATATAGGCACTAAACACCTTTTTGTGTTACTCGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAAATCTACATATAGGCACTAAACACCTTTTTGTGTTACTCGGA  677

seq1  CAGCTCATAAATTCCAGCTACGTGTTGGACTTAGAGGTATCAGATAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCATAAATTCCAGCTACGTGTTGGACTTAGAGGTATCAGATAATGT  727

seq1  TTGCTGTATGATTTCTAGTAAAATGAATTGTGAATTCTCTGATTGAAATA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGTATGATTTCTAGTAAAATGAATTGTGAATTCTCTGATTGAAATA  777

seq1  TAATTTTAATATCCTTTACTGTGTATGGCTGAGAAAAGTTCATTCCAAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTAATATCCTTTACTGTGTATGGCTGAGAAAAGTTCATTCCAAGT  827

seq1  TCATTTTTTTCTCCCTGATGTGAACTAAGTTCTGCTACTGTTGCCCGGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTTTTCTCCCTGATGTGAACTAAGTTCTGCTACTGTTGCCCGGCT  877

seq1  CTAGGCAATTATCATGAAGAAATTCCAGGGAGCCCAGAGGACCTTTCCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCAATTATCATGAAGAAATTCCAGGGAGCCCAGAGGACCTTTCCTT  927

seq1  CAAATACCTGTTCACCTAGAGTGCTTGAGGCATTCAATACTATTAGTTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCTGTTCACCTAGAGTGCTTGAGGCATTCAATACTATTAGTTCC  977

seq1  TGCATCCCTTTGAAATATGTACATTATTTCATCTTTATGGGAACACAGTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCCTTTGAAATATGTACATTATTTCATCTTTATGGGAACACAGTT  1027

seq1  TTGACCCTTGGAGTGTATAGATAATCTCCCCTGCAGTATAAGAAAATTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCCTTGGAGTGTATAGATAATCTCCCCTGCAGTATAAGAAAATTTT  1077

seq1  GACCTTAAGCAAATATTATAGAATTCTGGACCCCCAAATTTTATGTAGCA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTAAGCAAATATTATAGAATTCTGGACCCCCAAATTTTATGTAGCA  1127

seq1  AAGGCTTGAGGGATGTGTACTCTCATTTTAGGTTTCTCGCTTTCTACTCC  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTTGAGGGATGTGTACTCTCATTTTAGGTTTCTCGCTTTCTACTCC  1177

seq1  TTCTTCCCTTTAACTGCAATTTCCAGTTGGCTGTAAGAATTC  1241
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCCCTTTAACTGCAATTTCCAGTTGGCTGTAAGAATTC  1219