BAC Information

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BAC

Clone NameB6Ng01-045D11
Chromosome12 (Build37)
Map Location 63,311,810 - 63,478,492
singlet/doubletdoublet
Overlap geneLOC622746
Upstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699, LOC665707, LOC100040403, LOC665713
Downstream geneLOC100040438, 1700047L15Rik, Tspyl-ps, EG665741, EG382606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045D11.bB6Ng01-045D11.g
ACCDH870737DH870738
length1,044568
definitionDH870737|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D11, 5' end.DH870738|Mus musculus domesticus DNA, BAC clone: B6Ng01-045D11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,477,432 - 63,478,492)(63,311,810 - 63,312,383)
sequence
gaattcaaatagatccattcttactgcttagcaaaaaaaccaaacaaaca
aacaaaaactacaaatgaatcaaagaccacacaataatatttaaaacatt
tagttatatatgtgctctaaatctaacagatatataaaataaagtgaacc
tatttgaaaaaatatttaacatccacaaaatatattcaaatgtacatagc
atattaaatgttaacctatttaaataatattcaatcctaaatgtatatgt
gtcacatgtgtaattgtgttcaatttactcttttaattttttgtaactaa
tgaacaatcaagacaaaaaaaaaaaaaaaaccacatgatcaaaataagaa
attttgccagtatctcaccaaacagtgaacacaaagatgtgaaattataa
aacttttttccttctctcccatagcaccatttattctctcagaaatgtca
gataaggtgatttgcgttgaaatcagattttttttttaatttctgagtca
agtttctgctctgtattgttttgatataacattttttaaaacttttacag
attgtaaaattgtttttcatgcatagtatttttataacattatgtaatga
tttcctattacttatacagacatgatgttttttaagtctgtatccttttg
aatctctaattatatatgcactagaataaacaacactagatctaaaagtc
attaatttagttatttttgcatattttcagtgttttcttttttgatttaa
atttggaaaattcctatagatgctttttaagttgtaattgacttttcaat
tttctacccaggtaataatttccttcctgcaaaacatttattgccagttg
tagtggctattcctggttgtcacttgactatatttggaatgaactacaat
ccagaattgaaaggctcaccagtgacccttatctggaggcttgagatctt
atctgggtcttgtatgagatctgtgcatagtgctatggatcagagattga
atcttcgatttagaactacttatctggctacactttctgctgga
atttcttttcatatatacagatgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgacttatatgttctcatatatacaaagagaaacagggagttt
tggagaaacacagagagaaatggttaaaatgcatcagtttgaattataat
ccatatttggttatatgctcacatatgtgtgtgtatgtgtgtttgtgtgt
gtgaaatatataattgtaaaagataaaatttcaccagtcacatgtctaaa
tatggtcaactcatattattatctcgcccagtgagtagactagcaagtac
ttatgattatctaagggataatttataatataataaaatgccttatattg
aatatgatggtccatgcctatgatcaattgatctgaaactcgaggcaata
tcttcatgagttcaaggttagctttagctatatagtaatttccaaggtta
ttactagaatacctccaacagtatcaaccacgagctttagctgaatgtac
attcacattggaaaaaaaaaacagtaatttactaggtttgcccattaaaa
tcatgacactcattcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63477432_63478492
seq2: B6Ng01-045D11.b_47_1090 (reverse)

seq1  TCCAGCAGAAGGTGTAGCCCAGATTAAAGGTGTGTTCCTTAAACTCGGAG  50
      |||||||||| |||||| ||||||  |||    ||||  |||| ||| ||
seq2  TCCAGCAGAAAGTGTAG-CCAGAT--AAG--TAGTTC--TAAA-TCGAAG  42

seq1  ATTCAATCTTCTGGAATCCATAGCCACTATGGCACAAGATCTCCATACCA  100
      |||||||| ||||  |||||||| |||||| |||| |||||| |||| ||
seq2  ATTCAATC-TCTG--ATCCATAG-CACTAT-GCAC-AGATCT-CATA-CA  84

seq1  AGACCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCACTGGTGAGCC  150
      |||||||||||| ||||| |||||||||||||||||||||||||||||||
seq2  AGACCCAGATAA-GATCT-CAAGCCTCCAGATAAGGGTCACTGGTGAGCC  132

seq1  TTTCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAGTTGACAACCA  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCAATTCTGGATTGTAGTTCATTCCAAATATAGTCAAG-TGACAACCA  181

seq1  GGAATAGCCACTACAACTGGCAATAAATGTTTTGCAGGGAGG-AATTATT  249
      |||||||||||||||||||||||||||||||||||||| ||| |||||||
seq2  GGAATAGCCACTACAACTGGCAATAAATGTTTTGCAGGAAGGAAATTATT  231

seq1  ACCTGGGTAGAAAATTGAAAAGTCAATAACAACTTAAAAAGCATCTATAG  299
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACCTGGGTAGAAAATTGAAAAGTCAATTACAACTTAAAAAGCATCTATAG  281

seq1  GAATTATCCAAATTTAAATCAAAAAAGAAAACACTGAAAATATGCAAAAA  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTCCAAATTTAAATCAAAAAAGAAAACACTGAAAATATGCAAAAA  331

seq1  TAACTAAATTAATGAC-TTTAGATCTAGTGTTGTTTATTCTAGTGCATAT  398
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAACTAAATTAATGACTTTTAGATCTAGTGTTGTTTATTCTAGTGCATAT  381

seq1  ATAATTAGAGATTCAAAAGGATACAGACTTAAAAAACATCATGTCTGTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTAGAGATTCAAAAGGATACAGACTTAAAAAACATCATGTCTGTAT  431

seq1  AAGTAATAGGAAATCATTACATAATGTTATAAAAATACTATGCATGAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAGGAAATCATTACATAATGTTATAAAAATACTATGCATGAAAA  481

seq1  ACAATTTTACAATCTGTAAAAGTTTTAAAAAATGTTATATCAAAACAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTTACAATCTGTAAAAGTTTTAAAAAATGTTATATCAAAACAATA  531

seq1  CAGAGCAGAAACTTGACTCAGAAATTAAAAAAAAAATCTGATTTCAACGC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCAGAAACTTGACTCAGAAATTAAAAAAAAAATCTGATTTCAACGC  581

seq1  AAATCACCTTATCTGACATTTCTGAGAGAATAAATGGTGCTATGGGAGAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTTATCTGACATTTCTGAGAGAATAAATGGTGCTATGGGAGAG  631

seq1  AAGGAAAAAAGTTTTATAATTTCACATCTTTGTGTTCACTGTTTGGTGAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAAAGTTTTATAATTTCACATCTTTGTGTTCACTGTTTGGTGAG  681

seq1  ATACTGGCAAAATTTCTTATTTTGATCATGTGGTTTTTTTTTTTTTTTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGGCAAAATTTCTTATTTTGATCATGTGGTTTTTTTTTTTTTTTTG  731

seq1  TCTTGATTGTTCATTAGTTACAAAAAATTAAAAGAGTAAATTGAACACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATTGTTCATTAGTTACAAAAAATTAAAAGAGTAAATTGAACACAA  781

seq1  TTACACATGTGACACATATACATTTAGGATTGAATATTATTTAAATAGGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACATGTGACACATATACATTTAGGATTGAATATTATTTAAATAGGT  831

seq1  TAACATTTAATATGCTATGTACATTTGAATATATTTTGTGGATGTTAAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTAATATGCTATGTACATTTGAATATATTTTGTGGATGTTAAAT  881

seq1  ATTTTTTCAAATAGGTTCACTTTATTTTATATATCTGTTAGATTTAGAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCAAATAGGTTCACTTTATTTTATATATCTGTTAGATTTAGAGC  931

seq1  ACATATATAACTAAATGTTTTAAATATTATTGTGTGGTCTTTGATTCATT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATAACTAAATGTTTTAAATATTATTGTGTGGTCTTTGATTCATT  981

seq1  TGTAGTTTTTGTTTGTTTGTTTGGTTTTTTTGCTAAGCAGTAAGAATGGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTTTTTGTTTGTTTGTTTGGTTTTTTTGCTAAGCAGTAAGAATGGA  1031

seq1  TCTATTTGAATTC  1061
      |||||||||||||
seq2  TCTATTTGAATTC  1044

seq1: chr12_63311810_63312383
seq2: B6Ng01-045D11.g_68_641

seq1  GAATTCATTTCTTTTCATATATACAGATGTGTGTGTGTGTGTGTGTGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCTTTTCATATATACAGATGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGACTTATATGTTCTCATATATACAAAGAGAAACAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGACTTATATGTTCTCATATATACAAAGAGAAACAGG  100

seq1  GAGTTTTGGAGAAACACAGAGAGAAATGGTTAAAATGCATCAGTTTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTTGGAGAAACACAGAGAGAAATGGTTAAAATGCATCAGTTTGAAT  150

seq1  TATAATCCATATTTGGTTATATGCTCACATATGTGTGTGTATGTGTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATCCATATTTGGTTATATGCTCACATATGTGTGTGTATGTGTGTTT  200

seq1  GTGTGTGTGAAATATATAATTGTAAAAGATAAAATTTCACCAGTCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAAATATATAATTGTAAAAGATAAAATTTCACCAGTCACATG  250

seq1  TCTAAATATGGTCAACTCATATTATTATCTCGCCCAGTGAGTAGACTAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATGGTCAACTCATATTATTATCTCGCCCAGTGAGTAGACTAGC  300

seq1  AAGTACTTATGATTATCTAAGGGATAATTTATAATATAATAAAATGCCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTTATGATTATCTAAGGGATAATTTATAATATAATAAAATGCCTT  350

seq1  ATATTGAATATGATGGTCCATGCCTATGATCAATTGATCTGAAACTCGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAATATGATGGTCCATGCCTATGATCAATTGATCTGAAACTCGAG  400

seq1  GCAATATCTTCATGAGTTCAAGGTTAGCTTTAGCTATATAGTAATTTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATATCTTCATGAGTTCAAGGTTAGCTTTAGCTATATAGTAATTTCCA  450

seq1  AGGCTAGTACAAGAATACCTCCAACAGTATCAACCACGAGCTTTAGCTGA  500
      ||| || ||| |||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATTACTAGAATACCTCCAACAGTATCAACCACGAGCTTTAGCTGA  500

seq1  ATGTACATTCACATTGGAAAAAAAAAACAGTAATTTACTAGGTTTGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACATTCACATTGGAAAAAAAAAACAGTAATTTACTAGGTTTGCCCA  550

seq1  TTAAAATCATGACACTCATTCATG  574
      ||||||||||||||||||||||||
seq2  TTAAAATCATGACACTCATTCATG  574