BAC Information

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BAC

Clone NameB6Ng01-046B13
Chromosome12 (Build37)18 (Build37)
Map Location 32,631,616 - 32,631,84349,427,392 - 49,428,447
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046B13.bB6Ng01-046B13.g
ACCDH871363DH871364
length7101,041
definitionDH871363|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B13, 5' end.DH871364|Mus musculus domesticus DNA, BAC clone: B6Ng01-046B13, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(49,427,392 - 49,428,447)
sequence
gaattctttgtttaactctgtaccccactttttaatagggttatttggtc
ctctggagtctaacttcttgagttctttctgtatattggatattatccct
ctatcagatgtagggttggtatacatcttaccccaatctgctggttgctg
ttttgtcctattgatagtgtcctttgccttacataagctttacaatttta
tgaggtcccatttgcaaattcttgatcttacagcataagctattagtgtt
ctgttcaggaaattttcccctgtgcccatgtgcttgaggctcttcacact
ttcttctctataagttttaatgtctctgtttttatgtggaggtccttgat
ctacttggacttgagctttttacaaggagacaagaatgggtcaattactg
atatagctgtctcttgtgaggctatgccggggcctggcaaacacagaagt
agatgctcacagtcagctattggatggaacacagggcccccaatggagga
gctagagaaagtacccaaggagctaaaggggtctgcaaccctataggtgg
aacaacaatatgaactaaccagtacccccggatctcgtgtgtctagctgc
atatgtatcaaaagatggcctagtttgctatcattgggaagagaggcctc
ttggtcttgcaaactttatatgcctcagtatgggggaaagccagggccaa
gaagtgggag
gaattccccacagcaagtggtggtgattggttaagctcacttcttcaact
ggatattgagctggaattctctgaactgtgaggcacagagagaactctgt
gtgtgtgtgagctttcacccagatttacagaagacatatctgataaaaga
tggacctatagacagcagccatgaattacagggtgccagctcacccggga
gacttaatctaggatagcaaatgactgaatgccagatcgttcaggttcag
catgactagaggacaattttgattgaagaatgttatagattctgttcaca
gtgcacagtgtccacacacacaaatctctccttgaaaacacaaatcacac
aacctcaatctctgtagaatttgaaacgaatgtgtacatatatcacattt
atcccgaaaacaggcaggtattattgaaagacaatgtgtaaattctgatt
ctcttatttttattttcattgatctataatttttacaaacatagtatgtt
tctccatataaccatttttgtgtttgtatacatatttgcacatgaataaa
atgaaagcaattaataaaaagtccattgctacacacacacacacacacac
acacacacacacacacacacacacactccccttatttagaaggagcaaat
ttaaaatccatgcctcccctaggctttctggcttgagaaaaaggttgaca
gtttgtgatgagttttctaccagccagcccacctctgcatttcatggtat
ccacagctgttctcattttgaccaagaaattcgatttagactgaatttta
gttgcttgccttaccaataaatcatcagcacacaagttagaaagagctga
ggccccaaagtcatccactgagttaacttccaacagagatgctgatggtc
tagctttgggagctgtcctctccacgcttctcagcagtccttgctgaggg
accctgctcattgttttactttgtgtcctcctacagcttctctagaaagt
gcaaatgaggacaccatatcatttcatacttcgaaattccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-046B13.b_482_755 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCTTTCCCCCATACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      |||||||| |  |||||||||| ||| |||                ||| 
seq2  GCAAGACCAAGAGGCCTCTCTTCCCAATGATAGCAAACTAGGCCATCTTT  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      ||||||||| ||||||||| ||||||| ||||||||||||||| ||||||
seq2  TGATACATATGCAGCTAGACACACGAGATCCGGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      |||||||| |||||||||||||| ||||||| ||| ||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCC-ATCCAATAGCTGAC  249

seq1  TGTGAGCATCCACTTCTGTGTTTGC  228
      |||||||||| ||||||||||||||
seq2  TGTGAGCATCTACTTCTGTGTTTGC  274

seq1: chr18_49427392_49428447
seq2: B6Ng01-046B13.g_68_1108

seq1  GAATTCCCCACAGCAAGTGGTGGTGATTGGTTAAGCTCACTTCTTCAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACAGCAAGTGGTGGTGATTGGTTAAGCTCACTTCTTCAACT  50

seq1  GGATATTGAGCTGGAATTCTCTGAACTGTGAGGCACAGAGAGAACTCTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATTGAGCTGGAATTCTCTGAACTGTGAGGCACAGAGAGAACTCTGT  100

seq1  GTGTGTGTGAGCTTTCACCCAGATTTACAGAAGACATATCTGATAAAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGAGCTTTCACCCAGATTTACAGAAGACATATCTGATAAAAGA  150

seq1  TGGACCTATAGACAGCAGCCATGAATTACAGGGTGCCAGCTCACCCGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCTATAGACAGCAGCCATGAATTACAGGGTGCCAGCTCACCCGGGA  200

seq1  GACTTAATCTAGGATAGCAAATGACTGAATGCCAGATCGTTCAGGTTCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATCTAGGATAGCAAATGACTGAATGCCAGATCGTTCAGGTTCAG  250

seq1  CATGACTAGAGGACAATTTTGATTGAAGAATGTTATAGATTCTGTTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTAGAGGACAATTTTGATTGAAGAATGTTATAGATTCTGTTCACA  300

seq1  GTGCACAGTGTCCACACACACAAATCTCTCCTTGAAAACACAAATCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACAGTGTCCACACACACAAATCTCTCCTTGAAAACACAAATCACAC  350

seq1  AACCTCAATCTCTGTAGAATTTGAAACGAATGTGTACATATATCACATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAATCTCTGTAGAATTTGAAACGAATGTGTACATATATCACATTT  400

seq1  ATCCCGAAAACAGGCAGGTATTATTGAAAGACAATGTGTAAATTCTGATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCGAAAACAGGCAGGTATTATTGAAAGACAATGTGTAAATTCTGATT  450

seq1  CTCTTATTTTTATTTTCATTGATCTATAATTTTTACAAACATAGTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTATTTTTATTTTCATTGATCTATAATTTTTACAAACATAGTATGTT  500

seq1  TCTCCATATAACCATTTTTGTGTTTGTATACATATTTGCACATGAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATATAACCATTTTTGTGTTTGTATACATATTTGCACATGAATAAA  550

seq1  ATGAAAGCAATTAATAAAAAGTCCATTGCTACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCAATTAATAAAAAGTCCATTGCTACACACACACACACACACAC  600

seq1  ACACACACACACACACACACACACACTCCCCTTATTTAGAAGGAGCAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACTCCCCTTATTTAGAAGGAGCAAAT  650

seq1  TTAAAATCCATGCCTCCCCTAGGCTTCCTGGCTTGAGAAAAAGGTTGACA  700
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAAAATCCATGCCTCCCCTAGGCTTTCTGGCTTGAGAAAAAGGTTGACA  700

seq1  GTTTGTGATGAGTTTTCTACCAGCCAGCCCACCTCTGCATTTCATGGTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGATGAGTTTTCTACCAGCCAGCCCACCTCTGCATTTCATGGTAT  750

seq1  CCACAGCTGTTCTCATTTTGACCAAGAAATTCGATTTAGACTGAATTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTGTTCTCATTTTGACCAAGAAATTCGATTTAGACTGAATTTTA  800

seq1  GTTGCTTGCCTTACCAATAAATCATCAGCACACAAGTTAGAAAAGAGCTG  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTTGCTTGCCTTACCAATAAATCATCAGCACACAAGTTAG-AAAGAGCTG  849

seq1  AGGCCCCAAAGTCAACCACTGAGTTAACTTCCAACAGGAGATGCTGATGG  900
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  AGGCCCCAAAGTCATCCACTGAGTTAACTTCCAACA-GAGATGCTGATGG  898

seq1  TCTAGCTTTGGGGAGCTGTCCCCTCCACGGCCTCTCAGCAGTCCTTGGCT  950
      ||||||||| ||||||||||| |||||| || |||||||||||||| |||
seq2  TCTAGCTTT-GGGAGCTGTCCTCTCCAC-GCTTCTCAGCAGTCCTT-GCT  945

seq1  GAGGGGACCCTGCTCATTTGTTTTACTTTGTGTCCTCCCTACAGCTTCTC  1000
      || ||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GA-GGGACCCTGCTCA-TTGTTTTACTTTGTGTCCT-CCTACAGCTTCTC  992

seq1  TAGAAAGTGCAAATGAGGGACACCAATATCAATTTCATACCTTTCAGAAA  1050
      |||||||||||||||| ||||||| ||||| |||||||||  |||   ||
seq2  TAGAAAGTGCAAATGA-GGACACC-ATATC-ATTTCATAC--TTC--GAA  1035

seq1  ATTCCC  1056
      ||||||
seq2  ATTCCC  1041