BAC Information

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BAC

Clone NameB6Ng01-046L11
Chromosome12 (Build37)
Map Location 19,965,489 - 20,104,993
singlet/doubletdoublet
Overlap geneEG668600, LOC100042727
Upstream geneLOC668570, EG668413, LOC671401, EG546524, EG668584, EG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594
Downstream geneLOC673301, EG668605, LOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046L11.bB6Ng01-046L11.g
ACCDH871794DH871795
length1,077185
definitionDH871794|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L11, 5' end.DH871795|Mus musculus domesticus DNA, BAC clone: B6Ng01-046L11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,965,489 - 19,966,576)(20,104,809 - 20,104,993)
sequence
gaattctgatttcatatgatttgggtgaggcctgtagcttttatatttgt
aaaaggctcctccctagttcataatcactgatagacaggtgattatgtca
tgtcgtgtgccaggtagtgatgaatcaaggttatgcataacttggggata
ggatgtggttttggaagggaggaaactgaagtcaagacaggcatctctgc
agaggtgacctttgagcagtctggaatgtagaggctgcctgcttgcaaag
acctaggcatatatgagtcctggaaaagggctgagatgtgagtatcaggg
cagacagaaggcctgtgatgagaggtgagagagagcaatggggcctgtgt
ggaggggtggcttaggtccagatagcactgggctttaccttggggagaga
atttgcactttggctgtggaagttctcttacaataaatcatttctccagc
caccacttcacagtttaaagacatttcagtgcttgttcctaggcccagga
gaaaaggggggagaccagcaaaggagtaggggttcatttgggtgctgcgg
tggtggcagtgcagaagtgtcctttgaactgggtgtcattccctgatact
tgaagcatgggtctcctatcatccccaaggtaaaagtggcactgtccagc
atgccttagtggcagagaccaggtctactgtgaagattggctggctggag
gacttgtattgctgtgggatcacctctctgaaacgaactgaaatgctgag
ccagtgtctttatgatggtgcttgttcttccaaaggaatttgggtgactc
tttgtcttcatatatatatttaggtacctgtcatgtagtatccctgtcaa
gtgccggggctgtgaagaggacaggcctgctgaagactgaccctcagttc
tgtatgagttttaacgttttctatctgtgcctgacctctgacaacatact
tcttttagaagactgtgtccttcttttgtcctttccgtcagcttaccagg
tagccaggctggccttggtgctccctttccctctggatggctggggagta
tattccaggttctgcaaagaggttaac
ttgctggtgagatactagctcgagatacacagtggtccagcctcaatctc
ttgactggtggcatgtctaagaacctctgagtagatagaatattataggc
taagccctgtctggtaggggcttcaggatcagacactgaactcttctctt
ctcttctcttctcttctcttctcttctcttatctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_19965489_19966576
seq2: B6Ng01-046L11.b_44_1120

seq1  GAATTCTGATTTCATATGATTTGGGTGAGGCCTGTAGCTTTTATATTTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTCATATGATTTGGGTGAGGCCTGTAGCTTTTATATTTGT  50

seq1  AAAAGGCTCCTCCCTAGTTCATAATCACTGATAGACAGGTGATTATGTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTCCTCCCTAGTTCATAATCACTGATAGACAGGTGATTATGTCA  100

seq1  TGTCGTGTGCCAGGTAGTGATGAATCAAGGTTATGCATAACTTGGGGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTGTGCCAGGTAGTGATGAATCAAGGTTATGCATAACTTGGGGATA  150

seq1  GGATGTGGTTTTGGAAGGGAGGAAACTGAAGTCAAGACAGGCATCTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGGTTTTGGAAGGGAGGAAACTGAAGTCAAGACAGGCATCTCTGC  200

seq1  AGAGGTGACCTTTGAGCAGTCTGGAATGTAGAGGCTGCCTGCTTGCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGACCTTTGAGCAGTCTGGAATGTAGAGGCTGCCTGCTTGCAAAG  250

seq1  ACCTAGGCATATATGAGTCCTGGAAAAGGGCTGAGATGTGAGTATCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGCATATATGAGTCCTGGAAAAGGGCTGAGATGTGAGTATCAGGG  300

seq1  CAGACAGAAGGCCTGTGATGAGAGGTGAGAGAGAGCAATGGGGCCTGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAAGGCCTGTGATGAGAGGTGAGAGAGAGCAATGGGGCCTGTGT  350

seq1  GGAGGGGTGGCTTAGGTCCAGATAGCACTGGGCTTTACCTTGGGGAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGTGGCTTAGGTCCAGATAGCACTGGGCTTTACCTTGGGGAGAGA  400

seq1  ATTTGCACTTTGGCTGTGGAAGTTCTCTTACAATAAATCATTTCTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCACTTTGGCTGTGGAAGTTCTCTTACAATAAATCATTTCTCCAGC  450

seq1  CACCACTTCACAGTTTAAAGACATTTCAGTGCTTGTTCCTAGGCCCAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACTTCACAGTTTAAAGACATTTCAGTGCTTGTTCCTAGGCCCAGGA  500

seq1  GAAAAGGGGGGAGACCAGCAAAGGAGTAGGGGTTCATTTGGGTGCTGCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGGGGGGAGACCAGCAAAGGAGTAGGGGTTCATTTGGGTGCTGCGG  550

seq1  TGGTGGCAGTGCAGAAGTGTCCTTTGAACTGGGTGTCATTCCCTGATACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGTGCAGAAGTGTCCTTTGAACTGGGTGTCATTCCCTGATACT  600

seq1  TGAAGCATGGGTCTCCTATCATCCCCAAGGTAAAAGTGGCACTGTCCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCATGGGTCTCCTATCATCCCCAAGGTAAAAGTGGCACTGTCCAGC  650

seq1  ATGCCTTAGTGGCAGAGACCAGGTCTACTGTGAAGATTGGCTGGCTGGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTAGTGGCAGAGACCAGGTCTACTGTGAAGATTGGCTGGCTGGAG  700

seq1  GACTTGTATTGCTGTGGGATCACCTCTCTGAAACGAACTGAAATGCTGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGTATTGCTGTGGGATCACCTCTCTGAAACGAACTGAAATGCTGAG  750

seq1  CCAGTGTCTTTATGATGGTGCTTGTTCTTCCAAAGGAATTTGGGTGACTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTCTTTATGATGGTGCTTGTTCTTCCAAAGGAATTTGGGTGACTC  800

seq1  TTTGTCTTCATATATATATTTAGGTACCTGTCATGTAGTATCCCTGTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTCATATATATATTTAGGTACCTGTCATGTAGTATCCCTGTCAA  850

seq1  GTGCCGGGGCTGTGAAAGAGGACAGGCCTGCTGAAGACTGACCCTCAGGT  900
      |||||||||||||| |||||||||||||||||||||||||||||||| ||
seq2  GTGCCGGGGCTGTG-AAGAGGACAGGCCTGCTGAAGACTGACCCTCA-GT  898

seq1  TCTGTATGAGTTTTAACGTTTTCTATTCTGTGCCTGGACCTCTGACAACA  950
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  TCTGTATGAGTTTTAACGTTTTCTA-TCTGTGCCT-GACCTCTGACAACA  946

seq1  TACCTCTTTTTAGAAGGACTGTGTCCTTCTCTTGTTCTTTCCGTCAGCTT  1000
      ||| || |||||||| |||||||||||||| |||| ||||||||||||||
seq2  TACTTC-TTTTAGAA-GACTGTGTCCTTCTTTTGTCCTTTCCGTCAGCTT  994

seq1  ACCATGTAGCCCAGGCTGGCCTTTGGTGCTCCCTTTCCCTCT-GAGTGCT  1049
      |||| |||| ||||||||||| |||||||||||||||||||| ||  |||
seq2  ACCAGGTAG-CCAGGCTGGCC-TTGGTGCTCCCTTTCCCTCTGGATGGCT  1042

seq1  -GGGAGTATTATTCCAGGTATCCTGCAGAAAGAGGTTAAC  1088
       ||||||| |||||||||  | ||||  ||||||||||||
seq2  GGGGAGTA-TATTCCAGG--TTCTGC--AAAGAGGTTAAC  1077

seq1: chr12_20104809_20104993
seq2: B6Ng01-046L11.g_73_257 (reverse)

seq1  AAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGTTCAG  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGTTCAG  50

seq1  TGTCTGATCCTGAAGCCCCTACCAGACAGGGCTTAGCCTATAATATTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGATCCTGAAGCCCCTACCAGACAGGGCTTAGCCTATAATATTCTA  100

seq1  TCTACTCAGAGGTTCTTAGACATGCCACCAGTCAAGAGATTGAGGCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCAGAGGTTCTTAGACATGCCACCAGTCAAGAGATTGAGGCTGGA  150

seq1  CCACTGTGTATCTCGAGCTAGTATCTCACCAGCAA  185
      |||||||||||||||||||||||||||||||||||
seq2  CCACTGTGTATCTCGAGCTAGTATCTCACCAGCAA  185