BAC Information

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BAC

Clone NameB6Ng01-046N17
Chromosome12 (Build37)
Map Location 32,631,616 - 32,631,846
singlet/doubletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-046N17.bB6Ng01-046N17.g
ACCDH871891DH871892
length1,031772
definitionDH871891|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N17, 5' end.DH871892|Mus musculus domesticus DNA, BAC clone: B6Ng01-046N17, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcaactgaggaataccgaatggctgagaagcacctaaaaaatat
tcaacatccttaatcatcagggaaatgcaagtcaaaacaaccctgagatt
ccacctaacaccagtcagaatggctaagatcacaaactcaggtgacagca
gatgctggcaaggatgtggagaaagacgaacactcctccattgctggtgg
gactgcaagctagtacaaccactctggaaatgagtctcgcagttcctcag
aaaattaagcatagttctactggaagatccagcaatagtacttctgggca
tatacgcagagggtgctctaccatgtactaaggacacatgctccactatg
ttcacagcagccttacttataatagccagaagctggaaagatcccacatg
accctcaacagaggaatggatacagaaaatgtggtatatttataaaatgg
agtactatgtagctattaaaaacaatgagtttatgaaattcttaggcaaa
tggatggatctggatgatattttcctgagtgagttaaccaaatcacagaa
cacacatgatatgcacttactgataagtggatattagctcagaagcttat
aatccttcttagaaatgggaataaaacacccatggaaggagttacagaga
caaagttcagagcagagactgaagggataaacatccagagactgccccac
ctggagatccatcacataaacaatcaccaaacccaaacactatggcagat
gccaacaagagcttgctgacaggagcctgataaagctgtctcctgagagg
ctttgccagtgcctggcaaatacagaagtggaggctcacaaatacccatt
ggatagagcacgggttccccaatgaaaggagcctgagaaagatgcaagga
gctgaaggggtttttggccaaaggaggaacatcatatgaactaccagtat
ctcagagttcttgggactaaccacatcaagaaacctattgaactgtggtc
tgctttaatatcagaggatggctattgtcat
gaattctttgttcagctctgagccccactttttaatggggttatttgatt
ttctggagtctaccttcttgagttctttatatatatattggatattagtc
ccctatctgatttaggataggtaaagatcctttcccaatctgttggtggt
ctttttgtcttatagagggtgtcttttgccttgcagaagttttgcaactt
tatgaagtcccatttactgattctcaatcttacggcacaaaccattgcta
ttctattcaggaatttttcccctgtacccatacctttgaggcttttccct
actttctcctgtataagtttcagtgtctctggttttatgtggagttgacg
aaaggatgggccatctagagactgccatatccggggatccatcccataat
catcttccaaacgctgacaccattgcatacactagcaagattttgctgaa
aggacccagatagagctgtctcttgtgagactatgctggggcctagcaaa
cacagaagtggatgctcacagtcagctattggatggattacagggccccc
aatggaagagctagagaaagtacccaaggagctaaaggaatctgcaatcc
tataggtggaacaacaatatgaactaaccagtacccccctggagctcatg
tctctagcctgcatatgaatcagaaaatggcctggtcggccatcagtgga
aagagaggcccattagtcgtgcaaactttatatgcctcagtacaggggaa
ctacagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631846
seq2: B6Ng01-046N17.g_559_838 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGTAGTTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      ||| |||  |||||||||||||||||||||                 |||
seq2  GCACGACTAATGGGCCTCTCTTTCCACTGATGGCCGACCAGGCCATTTTC  100

seq1  TGATACATACGCA-GCTAGAGACACGAGCTCC--GGGGGTACTGGTCAGT  100
      |||| |||| ||| |||||||||| |||||||  |||||||||||| |||
seq2  TGATTCATATGCAGGCTAGAGACATGAGCTCCAGGGGGGTACTGGTTAGT  150

seq1  TCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGG  150
      ||||| |||||||||||||||||| |||||||  ||||||||||||||||
seq2  TCATATTGTTGTTCCACCTATAGGATTGCAGATTCCTTTAGCTCCTTGGG  200

seq1  TACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCT  200
      ||||||||||| ||| |||||||||| |||||| |||| |||||||||||
seq2  TACTTTCTCTAGCTCTTCCATTGGGGGCCCTGTAATCC-ATCCAATAGCT  249

seq1  GACTGTGAGCATCCACTTCTGTGTTTGCTAG  231
      |||||||||||||||||||||||||||||||
seq2  GACTGTGAGCATCCACTTCTGTGTTTGCTAG  280