BAC Information

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BAC

Clone NameB6Ng01-047C03
Chromosome12 (Build37)
Map Location 118,571,022 - 118,702,948
singlet/doubletdoublet
Overlap geneLOC432713, LOC100042461
Upstream geneD12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
Downstream geneRapgef5, A930023M06Rik, Cdca7l, Dnahc11, Sp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C03.bB6Ng01-047C03.g
ACCDH872078DH872079
length985789
definitionDH872078|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C03, 5' end.DH872079|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(118,571,022 - 118,572,014)(118,702,411 - 118,702,948)
sequence
gaattctgcttgacctcattctcttgtccagcacacccattgccctgaaa
acaccacacaccaaccacctgacctagggtttgcagatcaaccaggagag
tgaccacatacccacacccaacctgtgagaaccagcttcctcaaatggga
atggaaaacaagggccactctgccactgtgccgctctgctatttatatga
cagtgctccaggccccctttacaacagtcatgctattgtccctaggcttg
atcagacgctgaccttaccaccctaacaaaacactatgatctccatacct
caagcttcacattatttttctcattggtaacagaaattataactcaggtt
tccagttcacccagttcacatgctagatttatttattaccgtattgtgta
agtgttttgtctatatgtatctatgtgcaccacatgtgtgccaggtctct
atgaaggtcagatccccggatgttgcctgtgccctggaccgccttctgcc
cgactctacttgctcttgggggttggaggtgaggtgatgcagaatcaaca
gcacagactcggggaataggtgagaatgttgcagcaagctcattagaatg
ctgctgcaagctcctttaataccctctacccacacctcattggtctcaag
aaagcatctctttcaaacagcagtcaggcagtcttcaattaggtcctctt
gcaggagttgcctttgtggttgtgcacacgcgcgcgcacacacacacaca
cacacacacacacacaggcattcatgcaagaagcagccaccaccagtcct
cctacacccctaaggactgtagttacaggaagttatgacctacaatgtgg
ggcgctgggattgaacctggtcctcagaacagcagccaatgttcttaagc
actcaagtccaacctctccagcctagtcccactctaaatgtctgctagct
gggaggatgctgcctgctgacctatacatgcagga
gaattcagctatggatttgcttgagggcaatgggatgaagaatgtcttag
tcgctgctctactgctgtgaagagaaccatggctactgcaagttatagga
aaaaaaagcatttaattggggccttgcttacagcttcagagggccagttc
atggctatgatggcagggatcctggtgctgagagctttacaacctgattc
acaggcagcagacacacacacacacacacacacacacacacacacagaga
aagagagagagagagagacagacagacagacagacagacagacagacaca
gagagagagacagagagagagagagagagagacagagacagagacagaga
cagagacagagaaacagagacacggaaacagagagagcagcaacggaaag
actggagcaggtttggggtatgaatcctcaaagcccattcccagtgacac
atttacttcaacaaggcctatacttcctaattcttcccaaaccattccac
taactagggaccaagcattcaaatatgtgagcctatgtggaccaccctca
ttcaaaccaccacaaagggccagctcggtgaagtcttcaacagttcctgt
tgcacgctgctccctaagctcactatagttctgtgggcatttgttacatt
attacatgtgtttcttagtttattctctgctgttgtgataaacaccatga
cccaaagcagtagggaaggaaaagtctagttcatcttacagcttacagtt
cttcatgaagcggaggcagggcagggaactgaagcagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_118571022_118572014
seq2: B6Ng01-047C03.b_44_1028

seq1  GAATTCTGCTTGACCTCATTCTCTTGTCCAGCACACCCATTGCCCTGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTTGACCTCATTCTCTTGTCCAGCACACCCATTGCCCTGAAA  50

seq1  ACACCACACACCAACCACCTGACCTAGGGTTTGCAGATCAACCAGGAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACACACCAACCACCTGACCTAGGGTTTGCAGATCAACCAGGAGAG  100

seq1  TGACCACATACCCACACCCAACCTGTGAGAACCAGCTTCCTCAAATGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCACATACCCACACCCAACCTGTGAGAACCAGCTTCCTCAAATGGGA  150

seq1  ATGGAAAACAAGGGCCACTCTGCCACTGTGCCGCTCTGCTATTTATATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAAACAAGGGCCACTCTGCCACTGTGCCGCTCTGCTATTTATATGA  200

seq1  CAGTGCTCCAGGCCCCCTTTACAACAGTCATGCTATTGTCCCTAGGCTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTCCAGGCCCCCTTTACAACAGTCATGCTATTGTCCCTAGGCTTG  250

seq1  ATCAGACGCTGACCTTACCACCCTAACAAAACACTATGATCTCCATACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACGCTGACCTTACCACCCTAACAAAACACTATGATCTCCATACCT  300

seq1  CAAGCTTCACATTATTTTTCTCATTGGTAACAGAAATTATAACTCAGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTCACATTATTTTTCTCATTGGTAACAGAAATTATAACTCAGGTT  350

seq1  TCCAGTTCACCCAGTTCACATGCTAGATTTATTTATTACCGTATTGTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCACCCAGTTCACATGCTAGATTTATTTATTACCGTATTGTGTA  400

seq1  AGTGTTTTGTCTATATGTATCTATGTGCACCACATGTGTGCCAGGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTTGTCTATATGTATCTATGTGCACCACATGTGTGCCAGGTCTCT  450

seq1  ATGAAGGTCAGATCCCCGGATGTTGCCTGTGCCCTGGACCGCCTTCTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGGTCAGATCCCCGGATGTTGCCTGTGCCCTGGACCGCCTTCTGCC  500

seq1  CGACTCTACTTGCTCTTGGGGGTTGGAGGTGAGGTGATGCAGAATCAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTCTACTTGCTCTTGGGGGTTGGAGGTGAGGTGATGCAGAATCAACA  550

seq1  GCACAGACTCGGGGAATAGGTGAGAATGTTGCAGCAAGCTCATTAGAATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGACTCGGGGAATAGGTGAGAATGTTGCAGCAAGCTCATTAGAATG  600

seq1  CTGCTGCAAGCTCCTTTAATACCCTCTACCCACACCTCATTGGTCTCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGCAAGCTCCTTTAATACCCTCTACCCACACCTCATTGGTCTCAAG  650

seq1  AAAGCATCTCTTTCAAACAGCAGTCAGGCAGTCTTCAATTAGGTCCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCATCTCTTTCAAACAGCAGTCAGGCAGTCTTCAATTAGGTCCTCTT  700

seq1  GCAGGAGTTGCCTTTGTGGTTGTGCACACGCGCGCGCACACACACACACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGTTGCCTTTGTGGTTGTGCACACGCGCGCGCACACACACACACA  750

seq1  CACACACACACACACAGGCATTCATGC-AGAAGCAGCCACCACCAGTCCT  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CACACACACACACACAGGCATTCATGCAAGAAGCAGCCACCACCAGTCCT  800

seq1  CCTACACCC--TAGGACTGTAGTTACAGGAAGTTATGACCTACAATGT-G  846
      |||||||||   |||||||||||||||||||||||||||||||||||| |
seq2  CCTACACCCCTAAGGACTGTAGTTACAGGAAGTTATGACCTACAATGTGG  850

seq1  GGCGCTGGGAATTGAACCTGGGTCCTCAGGAACAGCAGCCAATGTTCTTA  896
      ||||||||| ||||||||| |||||||| |||||||||||||||||||||
seq2  GGCGCTGGG-ATTGAACCT-GGTCCTCA-GAACAGCAGCCAATGTTCTTA  897

seq1  AGCACTC-AGTCC-ATCTCTCCAGCCCTAGTTCACACTCTAAATGTCTTT  944
      ||||||| ||||| | |||||||| ||||| || |||||||||||||  |
seq2  AGCACTCAAGTCCAACCTCTCCAG-CCTAG-TCCCACTCTAAATGTC--T  943

seq1  GCTAAGCTGGGGAGGATGCTGCCTGGCTGAACCTATACAAAGGGCAGGA  993
      ||| |||| ||||||||||||||| |||| |||||||||    ||||||
seq2  GCT-AGCT-GGGAGGATGCTGCCT-GCTG-ACCTATACA---TGCAGGA  985

seq1: chr12_118702411_118702948
seq2: B6Ng01-047C03.g_66_603 (reverse)

seq1  ACATAGGCTCACATATTTGAATGCTTGGTCCCTAGTTAGTGGAATGGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGGCTCACATATTTGAATGCTTGGTCCCTAGTTAGTGGAATGGTTT  50

seq1  GGGAAGAATTAGGAAGTATAGGCCTTGTTGAAGTAAATGTGTCACTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATTAGGAAGTATAGGCCTTGTTGAAGTAAATGTGTCACTGGGA  100

seq1  ATGGGCTTTGAGGATTCATACCCCAAACCTGCTCCAGTCTTTCCGTTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTTTGAGGATTCATACCCCAAACCTGCTCCAGTCTTTCCGTTGCT  150

seq1  GCTCTCTCTGTTTCCGTGTCTCTGTTTCTCTGTCTCTGTCTCTGTCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTCTGTTTCCGTGTCTCTGTTTCTCTGTCTCTGTCTCTGTCTCTG  200

seq1  TCTCTGTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTGTGTCTGTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTGTGTCTGTCTG  250

seq1  TCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTTTCTCTGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTCTCTCTTTCTCTGTGTGTG  300

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCTGCCTGTGAATCAGGTTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTCTGCTGCCTGTGAATCAGGTTGT  350

seq1  AAAGCTCTCAGCACCAGGATCCCTGCCATCATAGCCATGAACTGGCCCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTCAGCACCAGGATCCCTGCCATCATAGCCATGAACTGGCCCTC  400

seq1  TGAAGCTGTAAGCAAGGCCCCAATTAAATGCTTTTTTTTCCTATAACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTGTAAGCAAGGCCCCAATTAAATGCTTTTTTTTCCTATAACTTG  450

seq1  CAGTAGCCATGGTTCTCTTCACAGCAGTAGAGCAGCGACTAAGACATTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCCATGGTTCTCTTCACAGCAGTAGAGCAGCGACTAAGACATTCT  500

seq1  TCATCCCATTGCCCTCAAGCAAATCCATAGCTGAATTC  538
      ||||||||||||||||||||||||||||||||||||||
seq2  TCATCCCATTGCCCTCAAGCAAATCCATAGCTGAATTC  538