BAC Information

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BAC

Clone NameB6Ng01-047C18
Chromosome12 (Build37)
Map Location 45,636,983 - 45,638,155
singlet/doubletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047C18.bB6Ng01-047C18.g
ACCDH872106DH872107
length1,2271,147
definitionDH872106|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C18, 5' end.DH872107|Mus musculus domesticus DNA, BAC clone: B6Ng01-047C18, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccatttactgactcacatatattgaaccatctctgtgatgaagcc
ttcttggtcatgtggtttgttgtgtgatgcttcctataagctgtgtggtt
ttcttcctggttcttgctcctggaataatgatgctgagactcaaatatat
ttacaagtagctagggcatatagatagacatgttctctgactagctcatg
agttaatatcacataagttctgccatatggctggcttctgtgctcatttc
tcatattctctactccttcatattccagggccaatcctcccatgcctgac
tctatcctagaatccttttgtctactagatgttccaccttctattcttct
ttttcctataggccatggcttttctatttacaagttatgtgtctatacaa
tatacaagatattctcgctacaatggatgatctcttttatggatttttgg
atgcagtttgcatgtattttattgagcattttcatatctatgttcataaa
ttgctcggtaattctctttctttgttgggtctttgtgtggcttggagatt
aggataactgtggccccataaaataaattggaaaatgttccttctatttt
ttattttgtagaataattagagaagtattggcattgagtcttctttgaaa
gtttgtttgaattctgcactaataccatcaggccctggactttttggttg
agagatttctactgagtgtttctatttcagtaggggttctaggtgtgttt
aaattgattaactgatcttggtaagaagtatgtgttgagaaatttttcat
ttgttttagattttcttgtttggtagagtacaggttttgaaagcagatcc
ttatgtttctatagatttcctcataactgttgtatgttctctactttatc
tcttacttgtaatttacatattctctcttgcatttcagtaatttaataag
ggtttgcaagtcttatcatttttgtcaagaaccaccactttatttcattg
attcttgtacttttgtttgaatttttttacttcagcattgaattggttat
ttccttgctatccacccttttggggtatgagatcctcttgtggtctcaga
cgctttacacagaattggggtcctctcttataactttggattagatttgg
gtgagatcatctgtcaatagaaaaggcatccacctgtcctctggcgtcac
ttgctcgcgaacatctatctcttctct
gaattccttttattatcccaaatgctgtcctcccagaatttgaaggttga
tcaatacaaatgtagctggcccaatcagaatgcttgaagttccactgaac
aatcccagtgttggcatccactagacactttcacacaaagtgtgttacta
atcctcccaggaccagttgcaggccaagtcagcttttgaacctccttttc
cctttgaggacttacaggaggttgaggctcaagtctcccaaataatgaaa
aactgacagccagtaaccttcagacaaaactgctgaccagctttggaaat
caacaagataaaagcaggagggtccaagtgcaggggaatgcaagctggac
tacctcattgcccagccccgagcatgtcctagcgtgtttgcattgggggc
caggtaagccttagtcataggaaaaggccctagacattgtgagatatata
gacacatgcttgacctctacctactacaggtaacacgtgttctactccag
aggcatgaggaacgaattccttggagcaatttagaagcatgctcaaggtc
tctagacagactttcctcagctggaactgctctgggtcaaaacaattagc
tctgtagtttcatattaaagggccaggcaacactttgaagagcacataga
aacaaggtcttctagaaagaaggattttaatctcattactaacccagata
agagtgttttctcttcattcctaattcatgtacctcctggctctggtaag
gcatgttaaggctccaatttaacaatcttttgaacatgagttttgtcaag
agtatgtttccctgagatataataatttacaccatttgaatactaatgag
ctgtatgtcggtgactctattgtaagaaagattcaatctaccttataaat
tatatgacagccattgcttgacccgaaagagcatggatttctcatgttac
atcagaaaaaaagtttgatatagatttgcatagtatattttccagacttt
ggtctgggaaatggacttgtagtgttggtgatgttacaaaggaagttgtg
tcttgactttccaccttagctggtattagtgagacctatgaggattactg
gctcgcacaaataaactgggaatctgggtacatattaacctaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45636983_45638155
seq2: B6Ng01-047C18.g_65_1211

seq1  GAATTCCTTTTATTATCCCAAATGCTGTCCTCCCAGAATTTGAAGGTTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTATTATCCCAAATGCTGTCCTCCCAGAATTTGAAGGTTGA  50

seq1  TCAATACAAATGTAGCTGGCCCAATCAGAATGCTTGAAGTTCCACTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATACAAATGTAGCTGGCCCAATCAGAATGCTTGAAGTTCCACTGAAC  100

seq1  AATCCCAGTGTTGGCATCCACTAGACACTTTCACACAAAGTGTGTTACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGTGTTGGCATCCACTAGACACTTTCACACAAAGTGTGTTACTA  150

seq1  ATCCTCCCAGGACCAGTTGCAGGCCAAGTCAGCTTTTGAACCTCCTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCCAGGACCAGTTGCAGGCCAAGTCAGCTTTTGAACCTCCTTTTC  200

seq1  CCTTTGAGGACTTACAGGAGGTTGAGGCTCAAGTCTCCCAAATAATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAGGACTTACAGGAGGTTGAGGCTCAAGTCTCCCAAATAATGAAA  250

seq1  AACTGACAGCCAGTAACCTTCAGACAAAACTGCTGACCAGCTTTGGAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACAGCCAGTAACCTTCAGACAAAACTGCTGACCAGCTTTGGAAAT  300

seq1  CAACAAGATAAAAGCAGGAGGGTCCAAGTGCAGGGGAATGCAAGCTGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGATAAAAGCAGGAGGGTCCAAGTGCAGGGGAATGCAAGCTGGAC  350

seq1  TACCTCATTGCCCAGCCCCGAGCATGTCCTAGCGTGTTTGCATTGGGGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCATTGCCCAGCCCCGAGCATGTCCTAGCGTGTTTGCATTGGGGGC  400

seq1  CAGGTAAGCCTTAGTCATAGGAAAAGGCCCTAGACATTGTGAGATATATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAGCCTTAGTCATAGGAAAAGGCCCTAGACATTGTGAGATATATA  450

seq1  GACACATGCTTGACCTCTACCTACTACAGGTAACACGTGTTCTACTCCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATGCTTGACCTCTACCTACTACAGGTAACACGTGTTCTACTCCAG  500

seq1  AGGCATGAGGAACGAATTCCTTGGAGCAATTTAGAAGCATGCTCAAGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGAGGAACGAATTCCTTGGAGCAATTTAGAAGCATGCTCAAGGTC  550

seq1  TCTAGACAGACTTTCCTCAGCTGGAACTGCTCTGGGTCAAAACAATTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACAGACTTTCCTCAGCTGGAACTGCTCTGGGTCAAAACAATTAGC  600

seq1  TCTGTAGTTTCATATTAAAGGGCCAGGCAACACTTTGAAGAGCACATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAGTTTCATATTAAAGGGCCAGGCAACACTTTGAAGAGCACATAGA  650

seq1  AACAAGGTCTTCTAGAAAGAAGGATTTTAATCTCATTACTAACCCAGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTCTTCTAGAAAGAAGGATTTTAATCTCATTACTAACCCAGATA  700

seq1  AGAGTGTTTTCTCTTCATTCCTAATTCATGTACCTCCTGGCTCTGGTAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTTTTCTCTTCATTCCTAATTCATGTACCTCCTGGCTCTGGTAAG  750

seq1  GCATGTTAAGGCTCCAATTTAACAATCTTTTGAACATGAGTTTTGTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTTAAGGCTCCAATTTAACAATCTTTTGAACATGAGTTTTGTCAAG  800

seq1  AGTATGTTTCCCTGAGATATAATAATTTACACCATTTGAATACTAATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTTTCCCTGAGATATAATAATTTACACCATTTGAATACTAATGAG  850

seq1  CTGTATGTCGGTGACTCTATTGTAAGAAAGATTCAAATCTACCTTATAAA  900
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTGTATGTCGGTGACTCTATTGTAAGAAAGATTC-AATCTACCTTATAAA  899

seq1  TTATATTGACAGCCATTGCTTGACCCGAAAGAAGCATGGATTTCTCATTG  950
      ||||| ||||||||||||||||||||||||| ||||||||||||||| ||
seq2  TTATA-TGACAGCCATTGCTTGACCCGAAAG-AGCATGGATTTCTCA-TG  946

seq1  TTACATCAGAAAAAAAAAGTTTGAATATTAGATTTGCATTAGTAATTATT  1000
      |||||||||  |||||||||||| ||| |||||||||| |||||  ||||
seq2  TTACATCAG--AAAAAAAGTTTG-ATA-TAGATTTGCA-TAGTA--TATT  989

seq1  TTCCCAGACTTTTGGTCTGGGAAAATGGACTTTGTAAGTGTGTGTGATGT  1050
      || |||||| ||||||||||| |||||||| |||| |||||  |||||||
seq2  TT-CCAGAC-TTTGGTCTGGG-AAATGGAC-TTGT-AGTGTTGGTGATGT  1034

seq1  TACCAAAGGGAAGTTGTGTCTTGACTTTCCAACTTTAGCTGAGTTATTTA  1100
      |||  || |||||||||||||||||||||| || ||||||| ||   |||
seq2  TAC--AAAGGAAGTTGTGTCTTGACTTTCC-ACCTTAGCTG-GT--ATTA  1078

seq1  GTTGAAGACTTAATGAGGATTTACT-GCTGCAACAAAT-AACTGGGAATA  1148
      ||   |||| | ||||||| ||||| |||   |||||| |||||||||| 
seq2  GT--GAGACCT-ATGAGGA-TTACTGGCTCGCACAAATAAACTGGGAAT-  1123

seq1  CTGGTGACATATTTAACCTAAGGCA  1173
      ||||  ||||| |||||||||||||
seq2  CTGGGTACATA-TTAACCTAAGGCA  1147