BAC Information

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BAC

Clone NameB6Ng01-047J08
Chromosome12 (Build37)
Map Location 82,388,402 - 82,389,532
singlet/doubletsinglet
Overlap geneSlc8a3
Upstream geneWdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, LOC100042143
Downstream geneLOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047J08.bB6Ng01-047J08.g
ACCDH872406DH872407
length9931,086
definitionDH872406|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J08, 5' end.DH872407|Mus musculus domesticus DNA, BAC clone: B6Ng01-047J08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcattttaggaaagattcctgctattaatatgctttcactgttatt
aaacatatataacaataagcaggtattagcccacccctttagagcagatc
tctgctgatccacaaagactgtcttgtagtaagtctatatagataaatag
atgacttctcaagtcttaatgataatcttatcagaattcctaaaattata
tcagtgattattaaactcttttatagtggaactgctattaggtccttttc
tgatagtcagaactgcaatgagaactctgccattctaccatgagtcacca
gttaatttttcttagtaaccagatgccacggactaggcccagttggcccc
cctcaatctgtgggaatcagggtcttggacagatgggcatagagtcagcg
agaattgacagacagactcaggtatgagagagtgtggatctgaatgtaat
ttgtcaattcgtgcatcagactttttatacagaagaaaatagggagttta
ggtgacacactggcaaggtacaatgaggttaccagatccttacataaaac
agaggaaagcaaacatgaaggactggcaagaaccagctgggataaaattc
aatgttaacaactgggatcaaaacagctccacctaaggtcagcttaatct
tagaagccagggggaaagggctttgtacccttgccatagttcctattcta
ctctattgtatagtccaccttccccctaggccattgtaaatcctgtgtat
gggtgtaactcagctatctatatattctagtatctacttctggttcttcc
tagacacaaccttcttcttctagatatgtaattcctgtgtaggcagtgac
tagtattcatgccaggtcgctcagactgacgctaggactggtgagatcta
actactaatagtcaatcatcttgaggccttaattagcaattatgaagcac
tatctgttactactaaagcagacatggaacttcgttatacgag
gaattcctgttctcagaagaggagaggcaccagggaaaggctggtgtgtt
cctgctcccaaggcagggcacagtggttactgtgagaatggagggagagg
cctcaagactgaaagaacttcctggcaccactcagagagaggctgctgag
aagggggcctccagtcactaaccccgtgggatagatcttaagtgctgggt
tcattggtgcacttcaggactagaacaataaataccatgcatgaaacaga
ggcttgagatctcttcattgagagaaagaaagaatgagcaaatgactgta
ccactcacccaggctaagcacactaaatccaggttcacacctataccccc
attgggccaacaaaaaaattcctagagagtgggaacttgccactgttttt
gcaacagcccacctcacctctttgtcttcatagttaaagttaactgatgg
gacttgcagagttttgaagagatgctttgcctctgtcctgtttggtatgg
aagaaccttcaacaaacatctgtggaatgactgtgtctagacactgcttt
catgactcctaggcaggacaaagacagggagcagagaggactacattctt
agccctctgtttatcttattgtgtgtggacaaataaataacctaagccac
cttagagaggaaactatgtgacagacctcctattagccaccactttgaaa
acgccttcccagtgccaggcactcggcttgtatgtactacatatttaaca
ggtattggttggaacatttgtgctgtccaacattaacaactggcattcaa
agctgaatcaaagcctctttaagctcttccaggcttagagagagtagcca
atagctgggacatacacctaactcagacacagcagaaaaatctaaacaca
tttacaccctcatctcagtgtctgtactttctttcagctgcaatgaaaga
tgttgatttcttgtcagtagagagatttactactactactactactacta
ctactaactctctcccatgggtattgatgcattcgaaaaagaatgaaatt
tgttttcctctccagccacgttgataataatgatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_82388402_82389532
seq2: B6Ng01-047J08.g_63_1148

seq1  GAATTCCTGTTCTCAGAAGAGGAGAGGCACCAGGGAAAGGCTGGTGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTTCTCAGAAGAGGAGAGGCACCAGGGAAAGGCTGGTGTGTT  50

seq1  CCTGCTCCCAAGGCAGGGCACAGTGGTTACTGTGAGAATGGAGGGAGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTCCCAAGGCAGGGCACAGTGGTTACTGTGAGAATGGAGGGAGAGG  100

seq1  CCTCAAGACTGAAAGAACTTCCTGGCACCACTCAGAGAGAGGCTGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGACTGAAAGAACTTCCTGGCACCACTCAGAGAGAGGCTGCTGAG  150

seq1  AAGGGGGCCTCCAGTCACTAACCCCGTGGGATAGATCTTAAGTGCTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCCTCCAGTCACTAACCCCGTGGGATAGATCTTAAGTGCTGGGT  200

seq1  TCATTGGTGCACTTCAGGACTAGAACAATAAATACCATGCATGAAACAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGGTGCACTTCAGGACTAGAACAATAAATACCATGCATGAAACAGA  250

seq1  GGCTTGAGATCTCTTCATTGAGAGAAAGAAAGAATGAGCAAATGACTGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGAGATCTCTTCATTGAGAGAAAGAAAGAATGAGCAAATGACTGTA  300

seq1  CCACTCACCCAGGCTAAGCACACTAAATCCAGGTTCACACCTATACCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACCCAGGCTAAGCACACTAAATCCAGGTTCACACCTATACCCCC  350

seq1  ATTGGGCCAACAAAAAAATTCCTAGAGAGTGGGAACTTGCCACTGTTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGCCAACAAAAAAATTCCTAGAGAGTGGGAACTTGCCACTGTTTTT  400

seq1  GCAACAGCCCACCTCACCTCTTTGTCTTCATAGTTAAAGTTAACTGATGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCCCACCTCACCTCTTTGTCTTCATAGTTAAAGTTAACTGATGG  450

seq1  GACTTGCAGAGTTTTGAAGAGATGCTTTGCCTCTGTCCTGTTTGGTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGCAGAGTTTTGAAGAGATGCTTTGCCTCTGTCCTGTTTGGTATGG  500

seq1  AAGAACCTTCAACAAACATCTGTGGAATGACTGTGTCTAGACACTGCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCTTCAACAAACATCTGTGGAATGACTGTGTCTAGACACTGCTTT  550

seq1  CATGACTCCTAGGCAGGACAAAGACAGGGAGCAGAGAGGACTACATTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACTCCTAGGCAGGACAAAGACAGGGAGCAGAGAGGACTACATTCTT  600

seq1  AGCCCTCTGTTTATCTTATTGTGTGTGGACAAATAAATAACCTAAGCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTCTGTTTATCTTATTGTGTGTGGACAAATAAATAACCTAAGCCAC  650

seq1  CTTAGAGAGGAAACTATGTGACAGACCTCCTATTAGCCACCACTTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAGAGGAAACTATGTGACAGACCTCCTATTAGCCACCACTTTGAAA  700

seq1  ACGCCTTCCCAGTGCCAGGCACTCGGCTTGTATGTACTACATATTTAACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCTTCCCAGTGCCAGGCACTCGGCTTGTATGTACTACATATTTAACA  750

seq1  GGTATTGGTTGGAACATTTGTGCTGTCCAACATTAACAACTGGCATTCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGGTTGGAACATTTGTGCTGTCCAACATTAACAACTGGCATTCAA  800

seq1  AGCTGAATCAAAGCCTCTTTAAGCTCTTCCAGGCTTAGAGAGAGTAGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAATCAAAGCCTCTTTAAGCTCTTCCAGGCTTAGAGAGAGTAGCCA  850

seq1  ATAGCTGGGGACATACACCTAACTCAGAACACAGCAGAAAACATCTAAAC  900
      |||||| |||||||||||||||||||| ||||||||||||| ||||||| 
seq2  ATAGCT-GGGACATACACCTAACTCAG-ACACAGCAGAAAA-ATCTAAA-  896

seq1  CACATTTACCACCCTCAATCCTTCAGTGTTCTGGTACTTTCCTTTCCAGC  950
      |||||||| ||||||| |||  |||||| ||| ||||||||  || ||| 
seq2  CACATTTA-CACCCTC-ATC--TCAGTG-TCT-GTACTTTC--TTTCAG-  937

seq1  CTGCAAATGAAAGGAGTGTTTGATTTCTTGTCCAGTAGAGAGAATTTTAA  1000
      |||| ||||||||  |   |||||||||||| |||||||||||   || |
seq2  CTGC-AATGAAAGATG---TTGATTTCTTGT-CAGTAGAGAGA---TTTA  979

seq1  CTAACTAACTAACTAACTAACTAACTAACTAACTAACT-TCTCCTTCCTC  1049
      || ||| ||| ||| ||| ||| ||| ||| ||||||| |||||     |
seq2  CT-ACT-ACT-ACT-ACT-ACT-ACT-ACT-ACTAACTCTCTCC-----C  1016

seq1  TTTGTGTTAGTGTGTATGCATGTGGAGAAGAGATGATAAATTTTGTTTTT  1099
       | |     || |  ||||||  | | ||||    || || |||| ||||
seq2  ATGG-----GTATTGATGCATTCGAAAAAGA----ATGAAATTTG-TTTT  1056

seq1  CTTCTCCAGCCACTGTCTGATAATAATGATGG  1131
      | ||||||||||| || |||||||||||||||
seq2  CCTCTCCAGCCAC-GT-TGATAATAATGATGG  1086