BAC Information

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BAC

Clone NameB6Ng01-047K24
Chromosome12 (Build37)
Map Location 53,689,702 - 53,804,172
singlet/doubletdoublet
Overlap geneAkap6
Upstream geneCoch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl, Arhgap5
Downstream geneNpas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-047K24.bB6Ng01-047K24.g
ACCDH872483DH872484
length1,1291,130
definitionDH872483|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K24, 5' end.DH872484|Mus musculus domesticus DNA, BAC clone: B6Ng01-047K24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,689,702 - 53,690,863)(53,803,004 - 53,804,172)
sequence
gaattcatgtatttccaggtatgttgtcatcggaattcggaaggaatgta
aggtttctgattcctgggtgctgtattcaggaatacactactattagttt
gtcttgaggcttaaattctttaatacttttactgatttaagatttaaatt
gacttaaaataccatttcattgtcttttacttaagtgtgcaaagttggct
atcagtctaatagtggttctttgtagagaatctgtccctttatctgacct
taatcttatttttatctttgatatactgttattgcagtgccacgtgtcta
agcttgtatttcttttcacttatattgacttggattttaaagttaactaa
aaatttgttctgttttactatgcccttaaatattctgtcttattctgtta
gtcttgttatgaacagaattgtgtccccccagcattcatgtgttaaagcc
ctaatcccagtgtaactgtgtttggtgatgcagacctttgatagctaatt
aaggtcaaatgaagatctacaggagggcatcattcagtataactggtgtc
ctcacaagagaccagagtactgtctctgcacctaccaccctacacatgca
cagaggaaaggcacagacaggaggcggccgtctacagtcagcaggagaag
cttcatccgggactcaggaagaaccttaatcttggccacctaatctgcag
gacaaagaaaaaaaataaatttctgtcaaaagaacaaagtcttcggtgtt
ttattgtgacagtcttagcagagtaacatatctaaatttggggaaagtac
attgtgaacttcatttgtttctgtcttgtagtccccatctaggtttagta
actttgtgctgaaatatatacatttcctattatttatttccatttagcaa
gccttttttaaatgactatctgatagtctagtctttgatttttatctagt
acacttttgttctatatagctctgatctattttctgatcatttttttcta
gtgtatctcactctgagttgcgctttattcatttattatttaaacagtca
tgtgaagttcttgctcagctccaaagatgatctggctaggcagcaaggga
gcattgaagaactggaggccctctaatga
gaattcaaataaacagaagcagttttttagtattcaggtgaaaagaatca
ccctaccaattgtaccagtttattttcatcttccctctacaattcactgt
gtgcgtggatgctccactgttttcttagcaaactctcaatcctgtacctc
acgcagaaacaaacttaggccttcttggagcagtctacgtcaatgactaa
cttcttctcagaacctagaaaaggctaatgcacccagtggagtaatattt
ctaagtattcgccacaccagaatcaatatcagtgtgctgtcagtgtgtgc
attagcctatattaaacaaagaagagcccctagagccctgtaatgacact
gggagtggatagctggggatggacgagacgaagcagagatgactgtattg
gctctccacaggcacaaggcttccgggatgttgcacaaggttgtgattct
tatattagatcacacagcactcggtttcaggcactgatatatccagtcaa
ataaaccctcttttgatttttttgactcgagagatggattcatattagac
cctctagcctgtgagggagatttccgcttttatatgacgggtgttgccac
caaacgcaaacatattaaggttagcagaacactacagatatcgctgataa
gacaggaacaacagacttgagtcactagtgactcagataagactcactgt
aggagacctgtcacggccatgctcactcttgaagtagttcaaatgttcag
ctaaacaggggtccccgcaaagggctgagcctcaactctgcattacttca
acagctgtggtcagagtaactattcacgtctggccaggagtcgtgttcat
ctttacagtaaaaatgatcagactacagtgagagtgcattctacctgtga
aatctgactttcgatagatcagaggtggggtctgcatgagtggggatgag
taaagagcatcatacactggggtagctgtgaaagctcgcagcttcaagca
ggctgcactggtttgatcagcccagtacgttaaaacatgtgactttacag
tgactactagatggtcgaaaatgagatacatcccatctctctgaagtgag
aatgtacttctatctcctgactccctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53689702_53690863
seq2: B6Ng01-047K24.b_43_1171

seq1  GAATTCATGTATTTCCAGGTATGTTGTCATCGGAATTCGGAAGGAATGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTATTTCCAGGTATGTTGTCATCGGAATTCGGAAGGAATGTA  50

seq1  AGGTTTCTGATTCCTGGGTGCTGTATTCAGGAATACACTACTATTAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTGATTCCTGGGTGCTGTATTCAGGAATACACTACTATTAGTTT  100

seq1  GTCTTGAGGCTTAAATTCTTTAATACTTTTACTGATTTAAGATTTAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAGGCTTAAATTCTTTAATACTTTTACTGATTTAAGATTTAAATT  150

seq1  GACTTAAAATACCATTTCATTGTCTTTTACTTAAGTGTGCAAAGTTGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAATACCATTTCATTGTCTTTTACTTAAGTGTGCAAAGTTGGCT  200

seq1  ATCAGTCTAATAGTGGTTCTTTGTAGAGAATCTGTCCCTTTATCTGACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCTAATAGTGGTTCTTTGTAGAGAATCTGTCCCTTTATCTGACCT  250

seq1  TAATCTTATTTTTATCTTTGATATACTGTTATTGCAGTGCCACGTGTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTATTTTTATCTTTGATATACTGTTATTGCAGTGCCACGTGTCTA  300

seq1  AGCTTGTATTTCTTTTCACTTATATTGACTTGGATTTTAAAGTTAACTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTATTTCTTTTCACTTATATTGACTTGGATTTTAAAGTTAACTAA  350

seq1  AAATTTGTTCTGTTTTACTATGCCCTTAAATATTCTGTCTTATTCTGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTGTTCTGTTTTACTATGCCCTTAAATATTCTGTCTTATTCTGTTA  400

seq1  GTCTTGTTATGAACAGAATTGTGTCCCCCCAGCATTCATGTGTTAAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTTATGAACAGAATTGTGTCCCCCCAGCATTCATGTGTTAAAGCC  450

seq1  CTAATCCCAGTGTAACTGTGTTTGGTGATGCAGACCTTTGATAGCTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCCCAGTGTAACTGTGTTTGGTGATGCAGACCTTTGATAGCTAATT  500

seq1  AAGGTCAAATGAAGATCTACAGGAGGGCATCATTCAGTATAACTGGTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAAATGAAGATCTACAGGAGGGCATCATTCAGTATAACTGGTGTC  550

seq1  CTCACAAGAGACCAGAGTACTGTCTCTGCACCTACCACCCTACACATGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAAGAGACCAGAGTACTGTCTCTGCACCTACCACCCTACACATGCA  600

seq1  CAGAGGAAAGGCACAGACAGGAGGCGGCCGTCTACAGTCAGCAGGAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAAAGGCACAGACAGGAGGCGGCCGTCTACAGTCAGCAGGAGAAG  650

seq1  CTTCATCCGGGACTCAGGAAGAACCTTAATCTTGGCCACCTAATCTGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCGGGACTCAGGAAGAACCTTAATCTTGGCCACCTAATCTGCAG  700

seq1  GACAAAGAAAAAAAATAAATTTCTGTCAAAAGAACAAAGTCTTCGGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGAAAAAAAATAAATTTCTGTCAAAAGAACAAAGTCTTCGGTGTT  750

seq1  TTATTGTGACAGTCTTAGCAGAGTAACATATCTAAATTTGGGGAAAGTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGACAGTCTTAGCAGAGTAACATATCTAAATTTGGGGAAAGTAC  800

seq1  ATTGTGAACTTCATTTGTTTCTGTCTTGTAGTCCCCATCTAGGTTTTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTGTGAACTTCATTTGTTTCTGTCTTGTAGTCCCCATCTAGG-TTTAGT  849

seq1  AACTTTGTGCTGAAATATATACATTTCCTATTATTTTATTTTCCATTTTA  900
      ||||||||||||||||||||||||||||||||||||   |||||| ||||
seq2  AACTTTGTGCTGAAATATATACATTTCCTATTATTT--ATTTCCA-TTTA  896

seq1  GCAAGCCTTTTTTTAAATGACTAATCTGATAGTCTAGTCTTTGAATTTTT  950
      ||||||| |||||||||||||| |||||||||||||||||||||  ||||
seq2  GCAAGCC-TTTTTTAAATGACT-ATCTGATAGTCTAGTCTTTGA--TTTT  942

seq1  AATCTTAGTTACACTTTTTGTTTCTATATTAGCTCTGATTCTATTTTTCT  1000
       ||| ||| |||||||||   ||||||| ||||||||| |||| ||||||
seq2  TATC-TAG-TACACTTTT--GTTCTATA-TAGCTCTGA-TCTA-TTTTCT  985

seq1  GATCATTTTTTTCTAGTGTATCCTTCACTCCTTGAGTATGCGCTTTTTAT  1050
      ||||||||||||||||||||||  ||||||  ||||| |||||||     
seq2  GATCATTTTTTTCTAGTGTATC--TCACTC--TGAGT-TGCGCTT-----  1025

seq1  TTTTATTTTTATTTATT-TTTATACAGTCCATGTTGAGTTCTTGCTCAGC  1099
           | || ||||||| |||| ||||| |||||  ||||||||||||||
seq2  -----TATTCATTTATTATTTAAACAGT-CATGTGAAGTTCTTGCTCAGC  1069

seq1  TCCAAGGATTGGATCTGGCTAGGGCAGCAAGGGAGCATTGAGGACCTGGA  1149
      ||||| |||  |||||||||| ||||||||||||||||||| || |||||
seq2  TCCAAAGAT--GATCTGGCTA-GGCAGCAAGGGAGCATTGAAGAACTGGA  1116

seq1  GGCCCTCTAATGA  1162
      |||||||||||||
seq2  GGCCCTCTAATGA  1129

seq1: chr12_53803004_53804172
seq2: B6Ng01-047K24.g_68_1197 (reverse)

seq1  CAAGA-GGAGTCAGGAGATAGAAAGTACCAATCTCACTTCAG-GAGATTG  48
      ||||| ||||||||||||||| ||||| || ||||||||||| ||||| |
seq2  CAAGAGGGAGTCAGGAGATAG-AAGTA-CATTCTCACTTCAGAGAGATGG  48

seq1  GGCACTGGTACTCATATTTTACAGAACCAATTCCTAGTTTAGTCACCTGG  98
      |    ||   ||||| ||       ||||    ||||  |||||| ||| 
seq2  G---ATGTATCTCATTTT-----CGACCA---TCTAG--TAGTCA-CTG-  83

seq1  TTAAAGTCACATGTTTTATACGTTACTGGGCTGATTCCAAACCAGTGCAG  148
       ||||||||||||||||| ||| ||||||||||||  |||||||||||||
seq2  -TAAAGTCACATGTTTTA-ACG-TACTGGGCTGAT--CAAACCAGTGCAG  128

seq1  CCTGGCTGTGAAGCCTGCGAGCTTTCCACAGCTACCCCAGTGTTATGATG  198
      ||| ||| ||||| ||||||||||| |||||||||||||||| |||||||
seq2  CCT-GCT-TGAAG-CTGCGAGCTTT-CACAGCTACCCCAGTG-TATGATG  173

seq1  CCTTCTTTTACTCATCCCCACTCAATTGCAGGACCCCACCCTTCCTGATT  248
      |  || ||||||||||||||||||  |||| |||||||||    |||| |
seq2  C--TC-TTTACTCATCCCCACTCA--TGCA-GACCCCACC---TCTGA-T  213

seq1  CTAATCCGAAAGTCAGATTTCACAGGTAGAATGCACTCTCAACTGTAGTC  298
      |||   |||||||||||||||||||||||||||||||||| |||||||||
seq2  CTA--TCGAAAGTCAGATTTCACAGGTAGAATGCACTCTC-ACTGTAGTC  260

seq1  TGATCATTTTTTACTGTAAAGATGAACACGACTCCTGGCCAGACGTGAAT  348
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCA-TTTTTACTGTAAAGATGAACACGACTCCTGGCCAGACGTGAAT  309

seq1  AGTTACTCTGACCACAGCTGTTGAAGTAATGCAGAGTTGAGGCTCAGCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACTCTGACCACAGCTGTTGAAGTAATGCAGAGTTGAGGCTCAGCCC  359

seq1  TTTGCGGGGACCCCTGTTTAGCTGAACATTTGAACTACTTCAAGAGTGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCGGGGACCCCTGTTTAGCTGAACATTTGAACTACTTCAAGAGTGAG  409

seq1  CATGGCCGTGACAGGTCTCCTACAGTGAGTCTTATCTGAGTCACTAGTGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCCGTGACAGGTCTCCTACAGTGAGTCTTATCTGAGTCACTAGTGA  459

seq1  CTCAAGTCTGTTGTTCCTGTCTTATCAGCGATATCTGTAGTGTTCTGCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGTCTGTTGTTCCTGTCTTATCAGCGATATCTGTAGTGTTCTGCTA  509

seq1  ACCTTAATATGTTTGCGTTTGGTGGCAACACCCGTCATATAAAAGCGGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATATGTTTGCGTTTGGTGGCAACACCCGTCATATAAAAGCGGAA  559

seq1  ATCTCCCTCACAGGCTAGAGGGTCTAATATGAATCCATCTCTCGAGTCAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTCACAGGCTAGAGGGTCTAATATGAATCCATCTCTCGAGTCAA  609

seq1  AAAAATCAAAAGAGGGTTTATTTGACTGGATATATCAGTGCCTGAAACCG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCAAAAGAGGGTTTATTTGACTGGATATATCAGTGCCTGAAACCG  659

seq1  AGTGCTGTGTGATCTAATATAAGAATCACAACCTTGTGCAACATCCCGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGTGTGATCTAATATAAGAATCACAACCTTGTGCAACATCCCGGA  709

seq1  AGCCTTGTGCCTGTGGAGAGCCAATACAGTCATCTCTGCTTCGTCTCGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTGTGCCTGTGGAGAGCCAATACAGTCATCTCTGCTTCGTCTCGTC  759

seq1  CATCCCCAGCTATCCACTCCCAGTGTCATTACAGGGCTCTAGGGGCTCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCAGCTATCCACTCCCAGTGTCATTACAGGGCTCTAGGGGCTCTT  809

seq1  CTTTGTTTAATATAGGCTAATGCACACACTGACAGCACACTGATATTGAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTTTAATATAGGCTAATGCACACACTGACAGCACACTGATATTGAT  859

seq1  TCTGGTGTGGCGAATACTTAGAAATATTACTCCACTGGGTGCATTAGCCT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTGTGGCGAATACTTAGAAATATTACTCCACTGGGTGCATTAGCCT  909

seq1  TTTCTAGGTTCTGAGAAGAAGTTAGTCATTGACGTAGACTGCTCCAAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGGTTCTGAGAAGAAGTTAGTCATTGACGTAGACTGCTCCAAGAA  959

seq1  GGCCTAAGTTTGTTTCTGCGTGAGGTACAGGATTGAGAGTTTGCTAAGAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAAGTTTGTTTCTGCGTGAGGTACAGGATTGAGAGTTTGCTAAGAA  1009

seq1  AACAGTGGAGCATCCACGCACACAGTGAATTGTAGAGGGAAGATGAAAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGAGCATCCACGCACACAGTGAATTGTAGAGGGAAGATGAAAAT  1059

seq1  AAACTGGTACAATTGGTAGGGTGATTCTTTTCACCTGAATACTAAAAAAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGGTACAATTGGTAGGGTGATTCTTTTCACCTGAATACTAAAAAAC  1109

seq1  TGCTTCTGTTTATTTGAATTC  1169
      |||||||||||||||||||||
seq2  TGCTTCTGTTTATTTGAATTC  1130