BAC Information

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BAC

Clone NameB6Ng01-048G02
Chromosome12 (Build37)
Map Location 33,970,121 - 34,086,844
singlet/doubletdoublet
Overlap geneAtxn7l1, 4930504H06Rik
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream geneTwistnb, LOC668801, LOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048G02.bB6Ng01-048G02.g
ACCDH872955DH872956
length1,046992
definitionDH872955|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G02, 5' end.DH872956|Mus musculus domesticus DNA, BAC clone: B6Ng01-048G02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,970,121 - 33,971,202)(34,085,845 - 34,086,844)
sequence
gaattcctctcagggttgccctgacccacaccaatgtactctgcctgtag
caggattaggaggagagtttgcaaagcacaggctcctaagattctgattc
tagggtggcaggagctgcttgcttcctgctgttactgatatttcactgca
gagtttagggtttatggcacagccccaaagcccagggggtgtgctggaga
atggagactgtgggactgtttgggttacggcgaccctgctgactcatgag
tggcctgggtgagctgcatggcctctccacactcatcttgaaagtaaggc
ttttcccagcagctaccgcacagagccgtggggattagctgagctaagcc
atgtgaattccttaaaactgatagttcttaatcagggtttgccttaatta
gttacagataaactgtgagggcctggggtgaatgaagtggactcagtcac
ttcatcttggactcagacactttgaggtcttgtctaggatgttccctaag
cactgggcgccttcaacatgatcagggcctccgtgtctcgccaagcagaa
gggttgttggacacccggctagcaccttgctgtaggggagaataatcagc
ttgaattcaaatacttatcccccaaggcatttctgacttgggtgtctgat
gcctatgtctgtctgccatagtttcaggtaggcagcctgccaacccatct
cccctgggcattgagtcacctgtattactaccatgcctgctataggttaa
agggctcaggctagcttctttcactgaagcttctttaactcctactagtg
gattccatgaaatcccttgctggaagtgaggcaggtgttggcagttgtca
acaggctctggcagtagcccagcagcacgtcagtcattgacctgtgagac
actgcttctggctgagtcaacaacgtgctatgtatcattggctcagcagt
cagcactggtcagtgtttagcatagtattagatctgctgctgaagtggtc
cgtagcctgagcttgtatcccggaattctagatgtacattgtttgt
gaattcacagggtagaccaggctgaccttgaactcacagagatcctcctg
cctcagtttcctgagtgtggggctccatcatccccaacctatttatggtt
ctgttttgtctcgctattttgccttttctgctatattcatttttattcct
tttcttttttccccttttcttaattatacctaaaagcagacctgcattta
gtgttggtgtcggtttcctgaggaaaaccctggcgacataatgaaacaca
gtcctgtgtcgatgactaacgaatcgtctatcaagcccacacacctcggg
tcctctcagcctacttaaaaaacaaaatagtaaatgcacagatagtcaag
atggctgttggactctccaaaggtcattatcatccggtggatggtgcagg
agaggctctccttttctttcttgtcttcctaaacagtgtagaagaagcct
gcatctctcgggcctgcatcagttctgcactgatcctgaaagacgcacag
cttctgagcgcatccctgccactgcagccttaagtgaagctggaatttac
aaactggctcagccaaggctgagattctgctgaatttcaaggcaagctgg
cctaaccatgggaaataatgtgtctttgagaaaactgttgtctaacaaag
gcgacagttggatggaagttgtctgaaaaatgttgaatgaatgaaacaga
cacatggaaacgtgggtaggaccatttattatcttgagctacaatgccac
taaaaacattgaccacatttttttcatccctcttgttcctaaggaaacaa
aagaacagaaaatttagctgtgagaagcaaagtaattgcattacaaatag
aaatgcagacattctgaaggcagtgttgggagcaaaagtaggctatgtct
gacttcactgtgctagcagggagctatgtagaactactatgatgtgttgg
tcattgagttctatattctgcttgggaatgcactggtatata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_33970121_33971202
seq2: B6Ng01-048G02.b_42_1087

seq1  GAATTCCTCTCAGGGTTGCCCTGACCCACACCAATGTACTCTGCCTGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCAGGGTTGCCCTGACCCACACCAATGTACTCTGCCTGTAG  50

seq1  CAGGATTAGGAGGAGAGTTTGCAAAGCACAGGCTCCTAAGATTCTGATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTAGGAGGAGAGTTTGCAAAGCACAGGCTCCTAAGATTCTGATTC  100

seq1  TAGGGTGGCAGGAGCTGCTTGCTTCCTGCTGTTACTGATATTTCACTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTGGCAGGAGCTGCTTGCTTCCTGCTGTTACTGATATTTCACTGCA  150

seq1  GAGTTTAGGGTTTATGGCACAGCCCCAAAGCCCAGGGGGTGTGCTGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTAGGGTTTATGGCACAGCCCCAAAGCCCAGGGGGTGTGCTGGAGA  200

seq1  ATGGAGACTGTGGGACTGTTTGGGTTACGGCGACCCTGCTGACTCATGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGACTGTGGGACTGTTTGGGTTACGGCGACCCTGCTGACTCATGAG  250

seq1  TGGCCTGGGTGAGCTGCATGGCCTCTCCACACTCATCTTGAAAGTAAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGGTGAGCTGCATGGCCTCTCCACACTCATCTTGAAAGTAAGGC  300

seq1  TTTTCCCAGCAGCTACCGCACAGAGCCGTGGGGATTAGCTGAGCTAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCAGCAGCTACCGCACAGAGCCGTGGGGATTAGCTGAGCTAAGCC  350

seq1  ATGTGAATTCCTTAAAACTGATAGTTCTTAATCAGGGTTTGCCTTAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATTCCTTAAAACTGATAGTTCTTAATCAGGGTTTGCCTTAATTA  400

seq1  GTTACAGATAAACTGTGAGGGCCTGGGGTGAATGAAGTGGACTCAGTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACAGATAAACTGTGAGGGCCTGGGGTGAATGAAGTGGACTCAGTCAC  450

seq1  TTCATCTTGGACTCAGACACTTTGAGGTCTTGTCTAGGATGTTCCCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTTGGACTCAGACACTTTGAGGTCTTGTCTAGGATGTTCCCTAAG  500

seq1  CACTGGGCGCCTTCAACATGATCAGGGCCTCCGTGTCTCGCCAAGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCGCCTTCAACATGATCAGGGCCTCCGTGTCTCGCCAAGCAGAA  550

seq1  GGGTTGTTGGACACCCGGCTAGCACCTTGCTGTAGGGGAGAATAATCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGTTGGACACCCGGCTAGCACCTTGCTGTAGGGGAGAATAATCAGC  600

seq1  TTGAATTCAAATACTTATCCCCCAAGGCA-TTCTGACTTGGGTGTCTGAT  649
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGAATTCAAATACTTATCCCCCAAGGCATTTCTGACTTGGGTGTCTGAT  650

seq1  GCCTATGTCTGTCTGCCATAG-TTCAGGTAGGCAGCCTGCCAACCCATCT  698
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCCTATGTCTGTCTGCCATAGTTTCAGGTAGGCAGCCTGCCAACCCATCT  700

seq1  CCCCTGGGCATTGAGTCACCTGTATTACTACCATGCCTGCTATAGGTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGGGCATTGAGTCACCTGTATTACTACCATGCCTGCTATAGGTTAA  750

seq1  AGGCCTCAGGCCTAGCCTCCTTTCCACTGAAGC-TCTTTAACTCCTACCT  797
      ||| |||||| ||||| ||  || ||||||||| ||||||||||||| ||
seq2  AGGGCTCAGG-CTAGCTTC--TTTCACTGAAGCTTCTTTAACTCCTA-CT  796

seq1  AGTGGATTCCATGAAATCCCCTTGCTGGAATGTGAGGCAGGGTGTTGGCA  847
      ||||||||||||||||| |||||||||||| |||||||| ||||||||||
seq2  AGTGGATTCCATGAAAT-CCCTTGCTGGAA-GTGAGGCA-GGTGTTGGCA  843

seq1  GTTGTCCACAGGCCTCTGGGCAGTAGCCCCAGCCAGCCACGTCAGTCATT  897
      |||||| ||||| |||| |||||||| ||||| ||| |||||||||||||
seq2  GTTGTCAACAGG-CTCT-GGCAGTAG-CCCAG-CAG-CACGTCAGTCATT  888

seq1  GACCCCTGTGAAGACACTGGCTTCTGGCTGAGGTCCAACACACGTGCTAT  947
      ||  |||||| ||||||| |||||||||||||   ||||| |||||||||
seq2  GA--CCTGTG-AGACACT-GCTTCTGGCTGAG--TCAACA-ACGTGCTAT  931

seq1  GTAATCATTGCCCTCAGCCAGCCCAGCACCTTGTTCAGTGGTATAGCATT  997
      || |||||||  ||||| |||  ||||||  || ||||| || |||||| 
seq2  GT-ATCATTG-GCTCAG-CAG-TCAGCAC--TGGTCAGT-GTTTAGCATA  974

seq1  GTAATTAGATACTGCTGCTGAAGGGTGGTCCGTAGGCCTGGAGCATTGAT  1047
      || ||||||| |||||||||||  |||||||||| |||| |||| ||| |
seq2  GT-ATTAGAT-CTGCTGCTGAA--GTGGTCCGTA-GCCT-GAGC-TTG-T  1016

seq1  ATCCCCGGATATTCTAAGATGTACATTTTGTTTGT  1082
      || |||||| ||||| |||||||||  ||||||||
seq2  AT-CCCGGA-ATTCT-AGATGTACA--TTGTTTGT  1046

seq1: chr12_34085845_34086844
seq2: B6Ng01-048G02.g_68_1059 (reverse)

seq1  TATATAAACAGTGCATTCCCAAAGCAG-ATATAGGAACCTCAATGACCAA  49
      ||||| | |||||||||||| |||||| ||||||  | ||||||||||||
seq2  TATAT-ACCAGTGCATTCCC-AAGCAGAATATAG--AACTCAATGACCAA  46

seq1  CACACATTCATAAGTAGTTCTACAATAGCTCCCCTTGCTTAGCACAGTGG  99
      ||||   |||| ||||||||||| |||||||||  ||| ||||||||| |
seq2  CACA---TCAT-AGTAGTTCTAC-ATAGCTCCC--TGC-TAGCACAGT-G  87

seq1  AGGTCAGACATAGCCTACCTTTGCTCCC-ACACTGCCTTCAG-ATGTCTG  147
      | |||||||||||||||| ||||||||| ||||||||||||| |||||||
seq2  AAGTCAGACATAGCCTACTTTTGCTCCCAACACTGCCTTCAGAATGTCTG  137

seq1  CATTTCTATTTGTAATGCAATTACTTTGCTTCTCACAGCTAAATTTTCTG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTATTTGTAATGCAATTACTTTGCTTCTCACAGCTAAATTTTCTG  187

seq1  TTC-TTTGTTTCCTTAGGAACAAGA-GGATGGAAAAAATGTGGTCAATG-  244
      ||| ||||||||||||||||||||| ||||| ||||||||||||||||| 
seq2  TTCTTTTGTTTCCTTAGGAACAAGAGGGATGAAAAAAATGTGGTCAATGT  237

seq1  TTTTAGTGGCATTGTAGCTCAAGATAATAAATGGTCCTA-CCACGTTTCC  293
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTAGTGGCATTGTAGCTCAAGATAATAAATGGTCCTACCCACGTTTCC  287

seq1  ATGTGTCTGGTTTCATTCATTCAACATTTTATCAGACAACTTCCATCCAA  343
      |||||||| ||||||||||||||||||||| |||||||||||||||||||
seq2  ATGTGTCT-GTTTCATTCATTCAACATTTT-TCAGACAACTTCCATCCAA  335

seq1  CTGTCGCCTTTGTTAGACAACAGTTTTCTCAAAGACACATTATTTCCCAT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCGCCTTTGTTAGACAACAGTTTTCTCAAAGACACATTATTTCCCAT  385

seq1  GGTTAGGCCAGCTTGCCTTGAAATTCAGCAGAATCTCAGCCTTGGCTGAG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGCCAGCTTGCCTTGAAATTCAGCAGAATCTCAGCCTTGGCTGAG  435

seq1  CCAGTTTGTAAATTCCAGCTTCACTTAAGGCTGCAGTGGCAGGGATGCGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTGTAAATTCCAGCTTCACTTAAGGCTGCAGTGGCAGGGATGCGC  485

seq1  TCAGAAGCTGTGCGTCTTTCAGGATCAGTGCAGAACTGATGCAGGCCCGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAGCTGTGCGTCTTTCAGGATCAGTGCAGAACTGATGCAGGCCCGA  535

seq1  GAGATGCAGGCTTCTTCTACACTGTTTAGGAAGACAAGAAAGAAAAGGAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCAGGCTTCTTCTACACTGTTTAGGAAGACAAGAAAGAAAAGGAG  585

seq1  AGCCTCTCCTGCACCATCCACCGGATGATAATGACCTTTGGAGAGTCCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTCCTGCACCATCCACCGGATGATAATGACCTTTGGAGAGTCCAA  635

seq1  CAGCCATCTTGACTATCTGTGCATTTACTATTTTGTTTTTTAAGTAGGCT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATCTTGACTATCTGTGCATTTACTATTTTGTTTTTTAAGTAGGCT  685

seq1  GAGAGGACCCGAGGTGTGTGGGCTTGATAGACGATTCGTTAGTCATCGAC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACCCGAGGTGTGTGGGCTTGATAGACGATTCGTTAGTCATCGAC  735

seq1  ACAGGACTGTGTTTCATTATGTCGCCAGGGTTTTCCTCAGGAAACCGACA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGTGTTTCATTATGTCGCCAGGGTTTTCCTCAGGAAACCGACA  785

seq1  CCAACACTAAATGCAGGTCTGCTTTTAGGTATAATTAAGAAAAGGGGAAA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACACTAAATGCAGGTCTGCTTTTAGGTATAATTAAGAAAAGGGGAAA  835

seq1  AAAGAAAAGGAATAAAAATGAATATAGCAGAAAAGGCAAAATAGCGAGAC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGAATAAAAATGAATATAGCAGAAAAGGCAAAATAGCGAGAC  885

seq1  AAAACAGAACCATAAATAGGTTGGGGATGATGGAGCCCCACACTCAGGAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGAACCATAAATAGGTTGGGGATGATGGAGCCCCACACTCAGGAA  935

seq1  ACTGAGGCAGGAGGATCTCTGTGAGTTCAAGGTCAGCCTGGTCTACCCTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGCAGGAGGATCTCTGTGAGTTCAAGGTCAGCCTGGTCTACCCTG  985

seq1  TGAATTC  1000
      |||||||
seq2  TGAATTC  992