BAC Information

Click to search

BAC

Clone NameB6Ng01-048M05
Chromosome12 (Build37)
Map Location 51,286,390 - 51,397,577
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream genePrkcm, LOC100039517, LOC636070
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048M05.bB6Ng01-048M05.g
ACCDH873224DH873225
length1,0011,044
definitionDH873224|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M05, 5' end.DH873225|Mus musculus domesticus DNA, BAC clone: B6Ng01-048M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,286,390 - 51,287,393)(51,396,499 - 51,397,577)
sequence
gaattcttggtaaggagttgggagtttctttgcctctagagaaagctctg
ttagtaatgaaagtactagatactgttgaggggtacaacctgcttgtaca
aggttctaaagttcctcaaccagagtggataaatgagttgtgtatattca
actctgatgttctgagtggactgagtctatgaattctaatagatttctta
ctactgttggatttactctggccagacactttctgttagccacattctgc
tttccatcaaatttcattcagtaaaaaagatgatgccatagtttatactc
tgttcttcgggcatttttctccagcatattttccttttcgttgtttcaga
agttagcaggcagatgaatttgaattcaagctaaatgagtttttatatcc
atgtttttattccattgaatgtcatgtacagtccaagctaaatacaatat
ctaacattcaaatgtggaagtataggtgggagataaatatttattctcca
caaagtttatttgtttcttagactataaaatctcccatattttattcaca
acattatttgcataaaaaatttaaaggtgaatttgacattggcagttata
ctgttcttctcccaccagacccctagaacgtaaatttatgattgatgcta
caatgtgcacttgactcaaggaacaaacttttaaatgggcaaacttgttt
cctcgttctattttcagattttaagataaaatttataaaaatgcatgcct
gtagtctacaagttaaaactgacccatttagaaatatcatatgtgtcttc
attgtcaaagtcataatttaaaaggaaatcttggtgtttctcactttagc
aacccagattgtttgttgtcagcctatcaaataattatgacgaggattta
attgttattatttttcaacatctagttaactcttcttcacagttaacttt
ttctctatggtggcatatttccctgatttttaaattcttgctagtaaatt
c
gaattcctgacccaaaatgtaatgtcaatatgacttcctgtgatcatgaa
tattcgagtatgatttctaatctgtgaggagggtttcggatttgataatg
tatctcatcaaacggaataactgatcatatcccttctacaaaacagctga
attctcaccgaaaagaagcttgacaaaatggtgaacaatccagagcactg
atttactatgagacagataaatacaatccaagctgtacaaggacatgaag
acctcatttaaaaaaaaaaaaaatcttgccttctgtctactaccagttac
agcctcttggaggccccgcttctgttgctggaccaggcattttttagcct
ctggaagaggaatggttctcttcttatcctcatttgtgcttacctgatgg
cttttctcagtaaagacacgaaaatttgctctatttctaaactgtttcac
tgtactgaaacaggactatgaaaatacagctgttttccatatactggtaa
caaaaaatgcaatgaaatattattttaaggaagagttatcaaaaccgggg
tgccaatcactctgaggagcctagtaaaaattatttgcacatcaatagtt
atatgcataacaagagattgtttctttttgtggaagcaaggtgcttaaaa
agacacagtattagctaaaaaggcaacttaaaatatcattcatttccctc
tcaaaaaaaggaaagggtcttatttataagtttgtccctcgcctgttagg
ctggcttgggattactgacactgctactggaatgtgaatgagatctgcgt
tctgcttacagaagaccgtatgctctgctgctactgggaagagatagcat
gtcatggtgctgtgccatacccacacactacttcatttggtcgtggtggc
acagatcattcatttatagaaacagtatatagtttacacatctatatatt
acagtgttctggtacaaaacagtgacaatggagtttaaaaatagagtgta
taatatcattaaatgactgtggtaaactcctgtaaatggaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51286390_51287393
seq2: B6Ng01-048M05.b_42_1042

seq1  GAATTCTTGGTAGAGAAGTTGACATATTTCTTTACCTCTAGTGAAAGCTA  50
      |||||||||||| || |||||  |  ||||||| ||||||| ||||||| 
seq2  GAATTCTTGGTA-AGGAGTTGGGA-GTTTCTTTGCCTCTAGAGAAAGCTC  48

seq1  GGTTAGTAAAGAAAGTACTAGATACTGTTGAGGGGTACAACCTGCTTGTA  100
       |||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTAATGAAAGTACTAGATACTGTTGAGGGGTACAACCTGCTTGTA  98

seq1  CAAGGCTCTAAAGTTCCTCAACCAGAGTGGATAAATGAGTTGTGTATATT  150
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTCTAAAGTTCCTCAACCAGAGTGGATAAATGAGTTGTGTATATT  148

seq1  CAACTCTGTTGTTCTGAGTGGACTGAGTCTATGAATTCTAATAGATTTCT  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTGATGTTCTGAGTGGACTGAGTCTATGAATTCTAATAGATTTCT  198

seq1  TACTACTGTTGGATTTACTCTGGCCAGACACTTTCTGTTAGCCACATTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACTGTTGGATTTACTCTGGCCAGACACTTTCTGTTAGCCACATTCT  248

seq1  GCTTTCCATCAAATTTCATTCAGTAAAAAAGATGATGCCATAGTTTATAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCCATCAAATTTCATTCAGTAAAAAAGATGATGCCATAGTTTATAC  298

seq1  TCTGTTCTTCGGGCATTTTTCTCCAGCATATTTTCCTTTTCGTTGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTCTTCGGGCATTTTTCTCCAGCATATTTTCCTTTTCGTTGTTTCA  348

seq1  GAAGTTAGCAGGCAGATGAATTTGAATTCAAGCTAAATGAGTTTTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAGCAGGCAGATGAATTTGAATTCAAGCTAAATGAGTTTTTATAT  398

seq1  CCATGTTTTTATTCCATTGAATGTCATGTACAGTCCAAGCTAAATACAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTTTATTCCATTGAATGTCATGTACAGTCCAAGCTAAATACAAT  448

seq1  ATCTAACATTCAAATGTGGAAGTATAGGTGGGAGATAAATATTTATTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAACATTCAAATGTGGAAGTATAGGTGGGAGATAAATATTTATTCTC  498

seq1  CACAAAGTTTATTTGTTTCTTAGACTATAAAATCTCCCATATTTTATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTTTATTTGTTTCTTAGACTATAAAATCTCCCATATTTTATTCA  548

seq1  CAACATTTTTTGCATAGAAAA-TTAAAGGTGAATTTGACATTGGCAGTTA  599
      ||||||| |||||||| |||| ||||||||||||||||||||||||||||
seq2  CAACATTATTTGCATAAAAAATTTAAAGGTGAATTTGACATTGGCAGTTA  598

seq1  TACTGTTCTTCTCCCACCAGACCCCTAGAACGTAAGTTTATGATTGATGC  649
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TACTGTTCTTCTCCCACCAGACCCCTAGAACGTAAATTTATGATTGATGC  648

seq1  TACAATGTGCACTTGACTCAAGGAACAAAC-TTTAAAT-GGCAAACTTGT  697
      |||||||||||||||||||||||||||||| ||||||| |||||||||||
seq2  TACAATGTGCACTTGACTCAAGGAACAAACTTTTAAATGGGCAAACTTGT  698

seq1  TTCCTCGTTCTATTTTCAGA-TTTAAGATAAAA-TTATAAAAATGCATGC  745
      |||||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  TTCCTCGTTCTATTTTCAGATTTTAAGATAAAATTTATAAAAATGCATGC  748

seq1  CTTTAGTCTACAAGTTAAAACTGACCCATTAAGAAATATCATATGTGTCT  795
      || ||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGTAGTCTACAAGTTAAAACTGACCCATTTAGAAATATCATATGTGTCT  798

seq1  TCATTGTCAAAGTCATAATTTAAAAGGAAAATCTTTGTGGTTTCTCATTT  845
      ||||||||||||||||||||||||||| ||||||| || |||||||| ||
seq2  TCATTGTCAAAGTCATAATTTAAAAGG-AAATCTTGGT-GTTTCTCACTT  846

seq1  TAGCAACCCAGA-TGTTTGTTGTCAGCTTATCATAATATTATTAATAGGA  894
      |||||||||||| |||||||||||||| ||||| |  ||||| |  ||| 
seq2  TAGCAACCCAGATTGTTTGTTGTCAGCCTATCAAATAATTATGACGAGG-  895

seq1  ATTTAATTGATATTAATTTCTCAACAACTAGGTTAACACTTCTTCACAGT  944
      ||||||||| |||| |||| |||||| ||| |||||| ||||||||||||
seq2  ATTTAATTGTTATT-ATTTTTCAACATCTA-GTTAACTCTTCTTCACAGT  943

seq1  TAAACTTTTTCTCTATGGTTGCCATATTTCCCTGATTTTTAAATTCTTTC  994
      | |||||||||||||||| || |||||||||||||||||||||||||| |
seq2  T-AACTTTTTCTCTATGG-TGGCATATTTCCCTGATTTTTAAATTCTTGC  991

seq1  TAGTAAATTC  1004
      ||||||||||
seq2  TAGTAAATTC  1001

seq1: chr12_51396499_51397577
seq2: B6Ng01-048M05.g_64_1107 (reverse)

seq1  TTTTTCCATTTTTACAGGGAAATTTTTACCACAAATTCCATATTTTAATG  50
      ||||||||  ||||||||      |||||||||       |  |||||||
seq2  TTTTTCCA--TTTACAGG----AGTTTACCACA------GTCATTTAATG  38

seq1  ATATTATACCAACTCTATTTTTTAAACTCATTTTGTCACTGTTTTGTAAC  100
      |||||||||  |||||| |||||||||||   |||||||||||||||| |
seq2  ATATTATAC--ACTCTA-TTTTTAAACTC-CATTGTCACTGTTTTGTACC  84

seq1  AGAAACACTGTAAATATTATAGATGTGGTAAACTATTATACTTGTTTTCT  150
      || |||||||| |||| ||||||||| |||||||| ||||| |||||   
seq2  AG-AACACTGT-AATA-TATAGATGT-GTAAACTA-TATAC-TGTTT--C  126

seq1  TATAAATGAAATGATCTGTGCCAACACTGACAAAATGAATTAATGTGTTG  200
      |||||||| |||||||||||||| ||| ||| ||||||| || ||||| |
seq2  TATAAATG-AATGATCTGTGCCACCAC-GACCAAATGAAGTAGTGTGTGG  174

seq1  CTAAGGCAACAGCCACATTACATGCTTTCTCTTTCACAGTAGGCAGCAGA  250
       || ||| |||||  ||| ||||||| |||| ||| ||||| ||||||||
seq2  GTATGGC-ACAGCACCATGACATGCTATCTC-TTCCCAGTA-GCAGCAGA  221

seq1  GCATATGGTTTTCTCTTAATGGAACGCTAGCTTCTCATTAACATACCAGT  300
      ||||| ||| |||| | |   |||||| ||  ||||||| |||| |||||
seq2  GCATACGGTCTTCTGTAAGCAGAACGC-AG-ATCTCATTCACATTCCAGT  269

seq1  AGCAGTGTCAGAACTTACAAGCCAGCATAACAGGGAGATGGAAAAACTTA  350
      ||||||||||| | |  ||||||||| ||||| || || ||| |||||||
seq2  AGCAGTGTCAGTAATCCCAAGCCAGCCTAACA-GGCGAGGGACAAACTTA  318

seq1  TAAATTAGACCCTTTCCGTACTATTGAGAGGGAAATGACTGATGTTCTAA  400
      ||||| ||||||||||| |  | ||||||||||||||| |||| || |||
seq2  TAAATAAGACCCTTTCC-TTTTTTTGAGAGGGAAATGAATGATATTTTAA  367

seq1  GGTACAATATTTAGCTAATACTGTGCCCTTTTCTGCACCTTCTTTCTACA  450
      | | |  | |||||||||||||||| | ||||  |||||||  ||| |||
seq2  GTTGC-CTTTTTAGCTAATACTGTGTCTTTTTAAGCACCTTGCTTCCACA  416

seq1  AAAAGAAACTTTTTTCTTGTAATAAATATAAATATTGAAGTGCAAATAAT  500
      |||||||||   | |||||| ||  |||||| |||||| |||||||||||
seq2  AAAAGAAAC-AATCTCTTGTTATGCATATAACTATTGATGTGCAAATAAT  465

seq1  TTTTACTCTGCTCCTCAGAGTGATTGGCACCCCGGTTTTGATAACTCTTC  550
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTAGGCTCCTCAGAGTGATTGGCACCCCGGTTTTGATAACTCTTC  515

seq1  CTTAAAATAATATTTCATTGCATTTTTTGTTACCAGTATATGGAAAACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAATATTTCATTGCATTTTTTGTTACCAGTATATGGAAAACAG  565

seq1  CTGTATTTTCATAGTCCTGTTTCAGTACAGTGAAACAGTTTAGAAATAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTTTCATAGTCCTGTTTCAGTACAGTGAAACAGTTTAGAAATAGA  615

seq1  GCAAATTTTCGTGTCTTTACTGAGAAAAGCCATCAGGTAAGCACAAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATTTTCGTGTCTTTACTGAGAAAAGCCATCAGGTAAGCACAAATGA  665

seq1  GGATAAGAAGAGAACCATTCCTCTTCCAGAGGCTAAAAAATGCCTGGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGAAGAGAACCATTCCTCTTCCAGAGGCTAAAAAATGCCTGGTCC  715

seq1  AGCAACAGAAGCGGGGCCTCCAAGAGGCTGTAACTGGTAGTAGACAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGAAGCGGGGCCTCCAAGAGGCTGTAACTGGTAGTAGACAGAAG  765

seq1  GCAAGATTTTTTTTTTTTTTAAATGAGGTCTTCATGTCCTTGTACAGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGATTTTTTTTTTTTTTAAATGAGGTCTTCATGTCCTTGTACAGCTT  815

seq1  GGATTGTATTTATCTGTCTCATAGTAAATCAGTGCTCTGGATTGTTCACC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTGTATTTATCTGTCTCATAGTAAATCAGTGCTCTGGATTGTTCACC  865

seq1  ATTTTGTCAAGCTTCTTTTCACTGAGAATTCAGCTGTTTTGTAGAAGGGA  950
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  ATTTTGTCAAGCTTCTTTTCGGTGAGAATTCAGCTGTTTTGTAGAAGGGA  915

seq1  TATGATCAGTTATTACGTTTGATGAGATACATTCTAAAATCTGAAACCCT  1000
      |||||||||||||| |||||||||||||||||| | ||||| ||||||||
seq2  TATGATCAGTTATTCCGTTTGATGAGATACATTATCAAATCCGAAACCCT  965

seq1  CCCTACAGATTAGAAATTATACTTGAATATTCATGATCACAGGAAGTGAT  1050
      ||  ||||||||||||| ||||| ||||||||||||||||||||||| ||
seq2  CCTCACAGATTAGAAATCATACTCGAATATTCATGATCACAGGAAGTCAT  1015

seq1  ATTGACATTACATTCTGGTTCAGGAATTC  1079
      |||||||||||||| ||| ||||||||||
seq2  ATTGACATTACATTTTGGGTCAGGAATTC  1044