BAC Information

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BAC

Clone NameB6Ng01-049B17
Chromosome3 (Build37)12 (Build37)
Map Location 77,911,361 - 77,912,45732,631,609 - 32,631,842
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneDnmt3a-ps1, EG626461, LOC667526
Downstream geneLOC626479, LOC100041691, LOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049B17.bB6Ng01-049B17.g
ACCDH873464DH873465
length1,052508
definitionDH873464|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B17, 5' end.DH873465|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(77,911,361 - 77,912,457)(32,631,609 - 32,631,842)
sequence
gaattcaccataattcaaaatctatgtcttatcaaacccatgaaatataa
attcattttttattgtgctttgcaaaaccagagcagtgatgttcccagca
actgtgcagtttcagaatgaaggtgaaacagtgtgttgaagctgggggca
ccacattggcttcttagtaccagaatgagtgttatctttgcattctgata
ctacaggggacattctggacatttgtatcagcatttaagttggcaaaata
aagaaggtagcagtggatacacatggaaaagacacagaggctcttcaatg
tgctgccatcactccttgcatgagatgctcaacttttccaaataaataat
agcatcagtggtgagccaactgcctttccttcactgaaacctgtcaccca
aaggaatgattggatccatctttttcgcatccaatagtttgtgttgggag
aaggtcagctgggatgctcttatagagtaataaagagctttagaagctac
tttgaaaccagtgatgtgcactagcctcataggtgccagccaccaaacct
gacaacctgaatttgatccttgggacacacatagtgaaaagagggaacct
actccccaaaagttgccctcgacctctaagcatactctcatgtacccaca
ctgcactcccacacacaataaaaataaatctctgaaaggcccattgtgta
aatgtaccacattttctgtatccattcttctcttgagggacatctgggtt
ctttccagcttctggctattataatacgttgctatgaacatagtggagca
tgtgtccttattacaagttagacatctttggggtatatacccaggagagg
tattgcgggatcttctggtagtatctgttcatctctgagaccacaaactg
atgtcagagtgttgtacagtgcatcccactacatgagagtgtctcttctc
acatctcaccagcatctgctgtccctgatttgatctacatctgactggtg
tgagtgatctcaggtgcttgataattcctgatgataagatgctgaacatt
tt
tttgttcagctctgagccccattttttaattgtgtgtacatagcatgcat
gtcctttggaaggagctacggagacaaagtttggagctgaggtgaaagga
tggaccatccagagactgccccaccatcccataatcagccaacaaacaga
cactattgcatacaccaacaagattttactgaaaggaccctgatatagct
gtctcttgtgaggctatgtcagtgcctgacaaatacagaagtggatgctc
acagtcagctattggatggaacacagggcccccaatggaggagctagaga
aagtacccaaggagctaaagggatctgcaaccctataggtggaacaacaa
tacaaactgagcagtacccccagagctcttgtctctagctgcatacgtaa
gagaagatggcctagtcattgggaagagaggcccttggtcttgcaaactt
tatatggcccagtacaggggaacaccagggccaagaagtgggagtgggta
gggagggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_77911361_77912457
seq2: B6Ng01-049B17.b_44_1095

seq1  GAATTCACCATAATTCAAAATCTATGTCTTATCAAACCCATGAAATATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATAATTCAAAATCTATGTCTTATCAAACCCATGAAATATAA  50

seq1  ATTCATTTTTTATTGTGCTTTGCAAAACCAGAGCAGTGATGTTCCCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTTTATTGTGCTTTGCAAAACCAGAGCAGTGATGTTCCCAGCA  100

seq1  ACTGTGCAGTTTCAGAATGAAGGTGAAACAGTGTGTTGAAGCTGGGGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAGTTTCAGAATGAAGGTGAAACAGTGTGTTGAAGCTGGGGGCA  150

seq1  CCACATTGGCTTCTTAGTACCAGAATGAGTGTTATCTTTGCATTCTGATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTGGCTTCTTAGTACCAGAATGAGTGTTATCTTTGCATTCTGATA  200

seq1  CTACAGGGGACATTCTGGACATTTGTATCAGCATTTAAGTTGGCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGGGGACATTCTGGACATTTGTATCAGCATTTAAGTTGGCAAAATA  250

seq1  AAGAAGGTAGCAGTGGATACACATGGAAAAGACACAGAGGCTCTTCAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGTAGCAGTGGATACACATGGAAAAGACACAGAGGCTCTTCAATG  300

seq1  TGCTGCCATCACTCCTTGCATGAGATGCTCAACTTTTCCAAATAAATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCCATCACTCCTTGCATGAGATGCTCAACTTTTCCAAATAAATAAT  350

seq1  AGCATCAGTGGTGAGCCAACTGCCTTTCCTTCACTGAAACCTGTCACCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCAGTGGTGAGCCAACTGCCTTTCCTTCACTGAAACCTGTCACCCA  400

seq1  AAGGAATGATTGGATCCATCTTTTTCGCATCCAATAGTTTGTGTTGGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAATGATTGGATCCATCTTTTTCGCATCCAATAGTTTGTGTTGGGAG  450

seq1  AAGGTCAGCTGGGATGCTCTTATAGAGTAATAAAGAGCTTTAGAAGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCAGCTGGGATGCTCTTATAGAGTAATAAAGAGCTTTAGAAGCTAC  500

seq1  TTTGAAACCAGTGATGTGCACTAGCCTCATAGGTGCCAGCCACCAAACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAAACCAGTGATGTGCACTAGCCTCATAGGTGCCAGCCACCAAACCT  550

seq1  GACAACCTGAATTTGATCCTTGGGACACACATAGTGAAAAGAGGGAACCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCTGAATTTGATCCTTGGGACACACATAGTGAAAAGAGGGAACCT  600

seq1  ACTCCCCAAAAGTTGCCCTCGACCTCTAAGCATACTCTCATGTACCCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCCAAAAGTTGCCCTCGACCTCTAAGCATACTCTCATGTACCCACA  650

seq1  CTGCACTCCCACACACAATAAAAATAAATCTCTGAAAGGCCCATTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTCCCACACACAATAAAAATAAATCTCTGAAAGGCCCATTGTGTA  700

seq1  AATGTACCACATTTTCTGTATCCATTCTTCTCTTGAGGGACATCTGGGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACCACATTTTCTGTATCCATTCTTCTCTTGAGGGACATCTGGGTT  750

seq1  CTTTCCAGCTTCTGGCTATTATAAATACGGTTGCTATGAACATAGTGGAG  800
      |||||||||||||||||||||| ||||| |||||||||||||||||||||
seq2  CTTTCCAGCTTCTGGCTATTAT-AATAC-GTTGCTATGAACATAGTGGAG  798

seq1  CATGTGTCCTTATTACAAGTTAGAACATCTTTGGGGTATATACCCAGGAG  850
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CATGTGTCCTTATTACAAGTTAG-ACATCTTTGGGGTATATACCCAGGAG  847

seq1  AGGTATTGCGGGATCTTCTGGTAGTAATCTGTTCCATCTTCTGAGGAACC  900
      ||||||||||||||||||||||||| ||||||| |||| ||||||  |||
seq2  AGGTATTGCGGGATCTTCTGGTAGT-ATCTGTT-CATC-TCTGAG--ACC  892

seq1  ACCAAACTGATGTCCAGAGTGGTTGTACCAGGTTGCAATCCCACTAACAA  950
      | ||||||||||| |||||| |||||| |||  ||| |||||||||   |
seq2  A-CAAACTGATGT-CAGAGT-GTTGTA-CAG--TGC-ATCCCACTA--CA  933

seq1  TGGAGGAGTGTTCCTCTTTCTCCACATCCTCACCAGCATCTGCTGTCCCC  1000
      ||   ||||||  ||| |||| ||||| |||||||||||||||||| |||
seq2  TG--AGAGTGT--CTC-TTCT-CACAT-CTCACCAGCATCTGCTGT-CCC  975

seq1  TGAATTTTTGATCTTAACCATTCTGACTGGTGTGAGGTGGAATCTCAGGG  1050
      |||   ||||||||  |    |||||||||||||| |||  |||||||| 
seq2  TGA---TTTGATCTACA----TCTGACTGGTGTGA-GTG--ATCTCAGG-  1014

seq1  TTGCTTTGATTTACATTTCCCTGATGATTAAGGATGCTGAACATTTT  1097
       ||| |||||    | || |||||||||  | |||||||||||||||
seq2  -TGC-TTGAT----AATT-CCTGATGAT--AAGATGCTGAACATTTT  1052

seq1: chr12_32631609_32631842
seq2: B6Ng01-049B17.g_301_579 (reverse)

seq1  CCCCTCC-------CTCCCACTTCTTGGCCCTG-----------------  26
      |||||||       |||||||||||||||||||                 
seq2  CCCCTCCCTACCCACTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGG  50

seq1  --------------GCAAGACCCATGGGCCTCTCTTTCCACTGA------  56
                    |||||| ||| ||||||||||| ||| |||      
seq2  GCCATATAAAGTTTGCAAGA-CCAAGGGCCTCTCTTCCCAATGACTAGGC  99

seq1  ---CTTCTGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGT  103
         |||||  ||| || ||||||||||||| |||||| |||||||||| |
seq2  CATCTTCTCTTACGTATGCAGCTAGAGACAAGAGCTCTGGGGGTACTGCT  149

seq1  CAGTTCATAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCT  153
      |||||  || |||||||||||||||||||||||||| |||||||||||||
seq2  CAGTTTGTATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCT  199

seq1  TGGGTACTTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAAT  203
      ||||||||||||||| |||||||||||||| ||||||| ||| |||||||
seq2  TGGGTACTTTCTCTAGCTCCTCCATTGGGGGCCCTGTGTTCC-ATCCAAT  248

seq1  AGCTGACTGTGAGCATCCACTTCTGTGTTTG  234
      |||||||||||||||||||||||||| ||||
seq2  AGCTGACTGTGAGCATCCACTTCTGTATTTG  279