BAC Information

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BAC

Clone NameB6Ng01-049B22
Chromosome12 (Build37)
Map Location 72,900,069 - 73,033,978
singlet/doubletdoublet
Overlap geneDaam1, LOC666213
Upstream geneFrmd6, Actr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190
Downstream geneLOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049B22.bB6Ng01-049B22.g
ACCDH873474DH873475
length1,0231,154
definitionDH873474|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B22, 5' end.DH873475|Mus musculus domesticus DNA, BAC clone: B6Ng01-049B22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,032,953 - 73,033,978)(72,900,069 - 72,901,266)
sequence
gaattctggggctgctgtgcatggaagataaccaaccttgtgcctttact
tctgtgtacaagctcagttgccctcaatcgcacagggtgtgtctgcttga
ttacacgtaggcaggaagtatgcagcctcgtgggtttttttctttataag
ctcctaagtaatatatataattcagtaccatactctgatgagcacctcca
gtctctggtatggtattggccagtatccacggtcctagccagcacttagt
aaatccttttatttattaatatttattcatggtcatggagaatatttgag
aaactccagacccatatgcctctttgcctgtgaagtgagttacttggcca
gaggtgacgctctgtggatagtgagcaggcctccctacacgttcctgcct
tgactacccctcattgattgatttagtctataaattgaaatgagtcctcc
ccaaaattgtattgtgacacaatggcagaatgaaaataggaccttggctg
cctcttgaaaatgccacacacacactttagtttatgggaattatctttag
aagttctgctaaataattagaacagaaacaagtgtctgaatttattaaat
tctctagtttttttttttttttgagaatatatatctatgctactgatttt
tagatggtatgatgggtagggccactaatccagccatctttaagatgtaa
ttctatagacttcttttttactgactcagtgacagtttgggtaagtgtga
atatatctggggttgttttccttttctcaaaacaggagaatgtttctgac
gttcctacaagctctaagaagtccaacagtgagacatcactggggcacac
ctctactgtacttaattccgagactcaacttctaacgtcaataactttga
aaaatttacaattgtccagtgattcagtggcagactattcatgtcaaccg
tcagcccaactgtcactcagaagccacccacgtctgtgcttgtcttgtca
ttatacatccctcctgtttgtta
gaattcaaatcccagcaaccacgtggtggctcacaaccatctgtaatgag
atctgatgccctcttctggcgtgtctgaagacagctacagtgtactcata
taaataaaatctttaaaaaaaagaaaaagaaaaaaaaagaaaaacatctg
tttatacatttacatgttaacatctatatgtgtaaaacataaatgtgcaa
aattatatgtgggccaatctcatttttaagaaaaaatgaaattacatgtt
tattttatgtgcactatgaatatggcaacaaaaatatgtaaaagagcaaa
actcaaacagaaggtgggcacggtggcacatgcctgcgttccccagactg
ggacggctgacccaggaggatagcttcacgttcaagaccaactttgccta
tggcatccagagttacattgcaagactgtttcaagattgcagaagatact
attagaattggatttgctttcttttcctggaatatagtttccatctttta
atcattactacgtattacttgcacaaatttaattatttggagaataactt
ttgattgtcacagtaggcttgataaaaggaaagctagctctgactgcaca
gaggcagaacgggaggagaggcgggtgagagaacctgtgagagcacgcgc
ctcagctgccgtccacatgcagcacacctctgtgcgaggaatcccggcaa
tccacatccttttctgtgcagctctcttgtgtggaaaagcatgatgtctt
tccgtacttcgatatgatgtcactaagattaggtgcatagcttggatcac
aagaaaatctcagataatgtcagcactctaggtttccaccggtgatgtga
gcaatggtttgttggagtatttatttagcattcctatttattttgctata
ttagatatgttctgaaatttttcatgcatcatggagagagattctctgtg
ggactctaaatggtaatcatttcatcaaggccagagtgctgttttggttt
gctctcttgaagttggatatgtccccgcattcagtctacagtgcagctta
tgaaacaacgatatggtttctgtccagaagcaggtactcatggaagaagc
ctaggagtgtcagtgccttaagcgtatgggcctgagagaagcgactaaat
atag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73032953_73033978
seq2: B6Ng01-049B22.b_41_1063 (reverse)

seq1  TAACAAACAGGAGGGATTGTATTAAATGACAAGAC-AGCACAGACGTGGG  49
      |||||||||||||||| |||||  ||||||||||| ||||||||||||||
seq2  TAACAAACAGGAGGGA-TGTAT--AATGACAAGACAAGCACAGACGTGGG  47

seq1  TGGCTACTGAGTGACAGTTGGGCTGACGGTTGACAATGAATAGTTCTGCC  99
      ||||| |||||||||||||||||||||||||||| |||||||| ||||||
seq2  TGGCTTCTGAGTGACAGTTGGGCTGACGGTTGAC-ATGAATAG-TCTGCC  95

seq1  ACTGAATCACTGGACAA-TGTAAATTTTTACAAGTTATTGACGTTAGAAG  148
      ||||||||||||||||| |||||||||||  |||||||||||||||||||
seq2  ACTGAATCACTGGACAATTGTAAATTTTTCAAAGTTATTGACGTTAGAAG  145

seq1  TTGAGTCTCGGAATTAAGTACAGTAGAGGTTGTGCCCCAGTGATGTCTCA  198
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TTGAGTCTCGGAATTAAGTACAGTAGAGG-TGTGCCCCAGTGATGTCTCA  194

seq1  CTGTTGGAC-TCTTAGAGCTTGTAGGAACGTCAGAAACATTCTCCTGTTT  247
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  CTGTTGGACTTCTTAGAGCTTGTAGGAACGTCAGAAACATTCTCCTG-TT  243

seq1  TTGAGAAAAGGAAAACAACCCCAGATATATTCACACTTACCCAAACTGTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGAAAAGGAAAACAACCCCAGATATATTCACACTTACCCAAACTGTC  293

seq1  ACCTGAGTCAGTAAAAAAGAAGTCTATAGAATTACATCTT-AAGATGGCT  346
      | |||||||||||||||||||||||||||||||||||||| |||||||||
seq2  A-CTGAGTCAGTAAAAAAGAAGTCTATAGAATTACATCTTAAAGATGGCT  342

seq1  GGATTAGTGG-CCTACCCATCATACCATCTAAAAATCAGTAGCATAGATA  395
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGTGGCCCTACCCATCATACCATCTAAAAATCAGTAGCATAGATA  392

seq1  TATATTCTCAAAAAAAAAAAAAAACTAGAGAATTTAATAAATTCAGACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTCAAAAAAAAAAAAAAACTAGAGAATTTAATAAATTCAGACAC  442

seq1  TTGTTTCTGTTCTAATTATTTAGCAGAACTTCTAAAGATAATTCCCATAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCTGTTCTAATTATTTAGCAGAACTTCTAAAGATAATTCCCATAA  492

seq1  ACTAAAGTGTGTGTGTGGCATTTTCAAGAGGCAGCCAAGGTCCTATTTTC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGTGTGTGTGTGGCATTTTCAAGAGGCAGCCAAGGTCCTATTTTC  542

seq1  ATTCTGCCATTGTGTCACAATACAATTTTGGGGAGGACTCATTTCAATTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGCCATTGTGTCACAATACAATTTTGGGGAGGACTCATTTCAATTT  592

seq1  ATAGACTAAATCAATCAATGAGGGGTAGTCAAGGCAGGAACGTGTAGGGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACTAAATCAATCAATGAGGGGTAGTCAAGGCAGGAACGTGTAGGGA  642

seq1  GGCCTGCTCACTATCCACAGAGCGTCACCTCTGGCCAAGTAACTCACTTC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGCTCACTATCCACAGAGCGTCACCTCTGGCCAAGTAACTCACTTC  692

seq1  ACAGGCAAAGAGGCATATGGGTCTGGAGTTTCTCAAATATTCTCCATGAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAAAGAGGCATATGGGTCTGGAGTTTCTCAAATATTCTCCATGAC  742

seq1  CATGAATAAATATTAATAAATAAAAGGATTTACTAAGTGCTGGCTAGGAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATAAATATTAATAAATAAAAGGATTTACTAAGTGCTGGCTAGGAC  792

seq1  CGTGGATACTGGCCAATACCATACCAGAGACTGGAGGTGCTCATCAGAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGGATACTGGCCAATACCATACCAGAGACTGGAGGTGCTCATCAGAGT  842

seq1  ATGGTACTGAATTATATATATTACTTAGGAGCTTATAAAGAAAAAAACCC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTACTGAATTATATATATTACTTAGGAGCTTATAAAGAAAAAAACCC  892

seq1  ACGAGGCTGCATACTTCCTGCCTACGTGTAATCAAGCAGACACACCCTGT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGGCTGCATACTTCCTGCCTACGTGTAATCAAGCAGACACACCCTGT  942

seq1  GCGATTGAGGGCAACTGAGCTTGTACACAGAAGTAAAGGCACAAGGTTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGATTGAGGGCAACTGAGCTTGTACACAGAAGTAAAGGCACAAGGTTGG  992

seq1  TTATCTTCCATGCACAGCAGCCCCAGAATTC  1026
      |||||||||||||||||||||||||||||||
seq2  TTATCTTCCATGCACAGCAGCCCCAGAATTC  1023

seq1: chr12_72900069_72901266
seq2: B6Ng01-049B22.g_66_1219

seq1  GAATTCAAATCCCAGCAACCACGTGGTGGCTCACAACCATCTGTAATGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATCCCAGCAACCACGTGGTGGCTCACAACCATCTGTAATGAG  50

seq1  ATCTGATGCCCTCTTCTGGCGTGTCTGAAGACAGCTACAGTGTACTCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATGCCCTCTTCTGGCGTGTCTGAAGACAGCTACAGTGTACTCATA  100

seq1  TAAATAAAATCTTTAAAAAAAAGAAAAAGAAAAAAAAAGAAAAACATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAAATCTTTAAAAAAAAGAAAAAGAAAAAAAAAGAAAAACATCTG  150

seq1  TTTATACATTTACATGTTAACATCTATATGTGTAAAACATAAATGTGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACATTTACATGTTAACATCTATATGTGTAAAACATAAATGTGCAA  200

seq1  AATTATATGTGGGCCAATCTCATTTTTAAGAAAAAATGAAATTACATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATGTGGGCCAATCTCATTTTTAAGAAAAAATGAAATTACATGTT  250

seq1  TATTTTATGTGCACTATGAATATGGCAACAAAAATATGTAAAAGAGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATGTGCACTATGAATATGGCAACAAAAATATGTAAAAGAGCAAA  300

seq1  ACTCAAACAGAAGGTGGGCACGGTGGCACATGCCTGCGTTCCCCAGACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAAACAGAAGGTGGGCACGGTGGCACATGCCTGCGTTCCCCAGACTG  350

seq1  GGACGGCTGACCCAGGAGGATAGCTTCACGTTCAAGACCAACTTTGCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGGCTGACCCAGGAGGATAGCTTCACGTTCAAGACCAACTTTGCCTA  400

seq1  TGGCATCCAGAGTTACATTGCAAGACTGTTTCAAGATTGCAGAAGATACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCCAGAGTTACATTGCAAGACTGTTTCAAGATTGCAGAAGATACT  450

seq1  ATTAGAATTGGATTTGCTTTCTTTTCCTGGAATATAGTTTCCATCTTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAATTGGATTTGCTTTCTTTTCCTGGAATATAGTTTCCATCTTTTA  500

seq1  ATCATTACTACGTATTACTTGCACAAATTTAATTATTTGGAGAATAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTACTACGTATTACTTGCACAAATTTAATTATTTGGAGAATAACTT  550

seq1  TTGATTGTCACAGTAGGCTTGATAAAAGGAAAGCTAGCTCTGACTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTGTCACAGTAGGCTTGATAAAAGGAAAGCTAGCTCTGACTGCACA  600

seq1  GAGGCAGAACGGGAGGAGAGGCGGGTGAGAGAACCTGTGAGAGCACGCGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAACGGGAGGAGAGGCGGGTGAGAGAACCTGTGAGAGCACGCGC  650

seq1  CTCAGCTGCCGTCCACATGCAGCACACCTCTGTGCGAGGAATCCCGGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCTGCCGTCCACATGCAGCACACCTCTGTGCGAGGAATCCCGGCAA  700

seq1  TCCACATCCTTTTCTGTGCAGCTCTCTTGTGTGGAAAAGCATGATGTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTTTTCTGTGCAGCTCTCTTGTGTGGAAAAGCATGATGTCTT  750

seq1  TCCGTACTTCGATATGATGTCACTAAGATTAGGTGCATAGCTTGGATCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTACTTCGATATGATGTCACTAAGATTAGGTGCATAGCTTGGATCAC  800

seq1  AAGAAAATCTCAGATAATGTCAGCACTCTAGGTTTCCACCGGTGATGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAATCTCAGATAATGTCAGCACTCTAGGTTTCCACCGGTGATGTGA  850

seq1  GCAATGGTTTTGTTGGAGTATTTATTTAGCATTCCTATTTATTTTGCTAT  900
      ||||||| ||||||||||||||||||||||||||||||||||||||||| 
seq2  GCAATGG-TTTGTTGGAGTATTTATTTAGCATTCCTATTTATTTTGCTA-  898

seq1  TATTAGATTATGTTCTGGAAATTTTTCCATGCATCATGGAGAGAGGATTC  950
      ||||||| |||||||| ||||||||| ||||||||||||||||| |||||
seq2  TATTAGA-TATGTTCT-GAAATTTTT-CATGCATCATGGAGAGA-GATTC  944

seq1  TCTGTGGGAACTCCTAAATTGGTAATCATTTCCATCAGGGCCAGAGTGGC  1000
      |||||||| ||| ||||| |||||||||||| ||||| ||||||||| ||
seq2  TCTGTGGG-ACT-CTAAA-TGGTAATCATTT-CATCAAGGCCAGAGT-GC  989

seq1  TGTTTTGGTTTTTGCTTCTCTGTGAAGGTTGGATAATTGTCCCCCGGCAT  1050
      ||||||||  ||||| ||||| |||| ||||||||  |||||||  ||||
seq2  TGTTTTGG--TTTGC-TCTCT-TGAA-GTTGGATA--TGTCCCC--GCAT  1030

seq1  TCAGTCTTACAGTGCAGGCTTTATGAAAACAACAGTATGGTTTCTGGTCG  1100
      |||||| ||||||||||   ||||| |||||||  |||||||||| ||| 
seq2  TCAGTC-TACAGTGCAG--CTTATG-AAACAACGATATGGTTTCT-GTC-  1074

seq1  CAG-AGCAGTGTAACTCATTGAAAAGGAAG-CTAGGAGTTTGCAGTGGCT  1148
      ||| ||||| || |||||| |||   |||| |||||||| | ||||| | 
seq2  CAGAAGCAG-GT-ACTCATGGAA---GAAGCCTAGGAGTGT-CAGTGCC-  1117

seq1  TTTTAAGGCAGTCATTGGCCGCTGAAGAGAAGCGAAGTTATAAAATATAG  1198
        |||||   || || |||  ||| |||||||||     |  ||||||||
seq2  --TTAAG--CGT-ATGGGC--CTG-AGAGAAGCG-----ACTAAATATAG  1154