BAC Information

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BAC

Clone NameB6Ng01-049F20
Chromosome12 (Build37)2 (Build37)
Map Location 7,019,300 - 7,020,31315,298,189 - 15,298,223
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100043137, LOC238049, LOC100042118
Downstream geneLOC668380, EG668388, Apob
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049F20.bB6Ng01-049F20.g
ACCDH873650DH873651
length988977
definitionDH873650|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F20, 5' end.DH873651|Mus musculus domesticus DNA, BAC clone: B6Ng01-049F20, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(7,019,300 - 7,020,313)(15,298,189 - 15,298,223)
sequence
gaattcactctcgcacctgcgtacaaggcttgtttactagttaggcacag
cggaggtccgcgccatcttataatggcgattgctcgcggcacacacggct
ctcctcagagattactggcggcacgcatgtgattgctcgcagcacgtacc
ggctctccacagagttttatataaaaccacctgttttatcttattttcac
tatgtagcttattcttgtcttgaatttaacaattctcctgtctctgacta
cttagtgccaggattacaaaagccatgcattttgccaagtttcttttatt
tattgagcacaatattataaatattattcctacaattccaaaactaaatg
gtaaaacatgttctagccagtctttttttcaatgttaacagttcaaaact
tcccaaacacctatagcaactgacttgagttccttctttatattctctat
tataaaatttcgcactatagttgacaaagacatggattgaaatgccactt
gatggtttcataaaaatacatcatagtttgtcaaaatcaaggcaacagtt
taaaagtttaatagttaccttttctgtatttgtagtgaagataataaatt
tggctccctaaccagagttctaaaaacaagttaccataaatgtcaatatc
ggagcattagggaccacagaagatgtagtaatagacgttatctagacctt
ttctgtgatatatctatatctatatgtatatctctatctgtatgtatgta
tgtatgtatgtatgtatgtatcatcatctatctatctatcgagtataata
cagaagtagtagtgagatgcagttcaaccaatcatcaaacttagatatat
atttttggtaaggtgtagagatggctcactagttagagcctgacattctt
gtgacaccagtttgaaaacagttcccaaaagctcaaattacttgcattca
gcctaggattcaatgcttcttctatttccaataccaga
gaattctttgtttggctcaaattcattaaattctttgtttggctcaaatt
cattaaattcatttttaatggggttatttgaattttggagttcaactccg
tgacctctttgtatatattggatattagtcccctataagatttaggattg
gtaaaaattctttcccaatctgttgttggcctttctgttactgacattat
ctattgccctacagaagctttgcaattttatgaggtcccatttgtcaatt
cttcatcttacagcacaggccattgctgttttgttcaggaatttttcccc
tgtgcccatatcttcgaggcttttccccactttcccttctagaagtttca
gagtctctggatttaagtggagttccttgatccacttagacttgagcgtt
atacaaggagataggaatggatcaatttgcattcttctacatgataacca
ccagttgtgccaggaccatttgttgaaaatgctgtcttatttccactgga
tggttttagctcccttgtcaaagatcaagtgaccataggtgtgttgattc
atttctgggtcttcaattctattccattgatctacctctctgtcgctgta
ccagtaccatgcagtttttatcaaaattgctctgtagtacagctttagat
caggcatggtgattccccccagaggttcttttattgttgagaatagtttt
tgctatcctaggttttttgttattccagatttatttgcaaattgcctttt
ctagctcagtgaataattggtttagaattttgatggagattgcattgaat
ctgtagattgctttcggtagatatccattttactatataatcctgccatc
actctggaatcagtttgcgtctcagaaactgacatagtactacagagagc
atcatactctctgtgatatacccagagatgtcagctgtattagcacatgc
tccactatgttcatagcagcctattta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_7019300_7020313
seq2: B6Ng01-049F20.b_43_1030

seq1  GAATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTCGCACCTGCGTACAAGGCTTGTTTACTAGTTAGGCACAG  50

seq1  CGGAGGTCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGTCCGCGCCATCTTATAATGGCGATTGCTCGCGGCACACACGGCT  100

seq1  CTCCTCAGAGATTACTGGCGGCACGCATGTGATTGCTCGCAGCACGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAGAGATTACTGGCGGCACGCATGTGATTGCTCGCAGCACGTACC  150

seq1  GGCTCTCCACAGAGTTTTATATAAAACCACCTGTTTTATCTTATTTTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCCACAGAGTTTTATATAAAACCACCTGTTTTATCTTATTTTCAC  200

seq1  TATGTAGCTTATTCTTGTCTTGAATTTAACAATTCTCCTGTCTCTGACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCTTATTCTTGTCTTGAATTTAACAATTCTCCTGTCTCTGACTA  250

seq1  CTTAGTGCCAGGATTACAAAAGCCATGCATTTTGCCAAGTTTCTTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTGCCAGGATTACAAAAGCCATGCATTTTGCCAAGTTTCTTTTATT  300

seq1  TATTGAGCACAATATTATAAATATTATTCCTACAATTCCAAAACTAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAGCACAATATTATAAATATTATTCCTACAATTCCAAAACTAAATG  350

seq1  GTAAAACATGTTCTAGCCAGTCTTTTTTTCAATGTTAACAGTTCAAAACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACATGTTCTAGCCAGTCTTTTTTTCAATGTTAACAGTTCAAAACT  400

seq1  TCCCAAACACCTATAGCAACTGACTTGAGTTCCTTCTTTATATTCTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAACACCTATAGCAACTGACTTGAGTTCCTTCTTTATATTCTCTAT  450

seq1  TATAAAATTTCGCACTATAGTTGACAAAGACATGGATTGAAATGCCACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATTTCGCACTATAGTTGACAAAGACATGGATTGAAATGCCACTT  500

seq1  GATGGTTTCATAAAAATACATCATAGTTTGTCAAAATCAAGGCAACAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTCATAAAAATACATCATAGTTTGTCAAAATCAAGGCAACAGTT  550

seq1  TAAAAGTTTAATAGTTACCTTTTCTGTATTTGTAGTGAAGATAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTTAATAGTTACCTTTTCTGTATTTGTAGTGAAGATAATAAATT  600

seq1  TGGCTCCCTAACCAGAGTTCTAAAAACAAGTTACCATAAATGTCAATATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCCCTAACCAGAGTTCTAAAAACAAGTTACCATAAATGTCAATATC  650

seq1  GGAGCATTAGGGACCACAGAAGATGTAGTAATAGACGTTATCTAGACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCATTAGGGACCACAGAAGATGTAGTAATAGACGTTATCTAGACCTT  700

seq1  TTCTGTGATATATCTATATCTATATGTATATCTCTATCTGTATGTATGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGATATATCTATATCTATATGTATATCTCTATCTGTATGTATGTA  750

seq1  TGTATGTATGTATGTATGTATCTATCTATCTATCTATCTATCTAAGTATA  800
      |||||||||||||||||||||| ||| |||||||||||||||  ||||| 
seq2  TGTATGTATGTATGTATGTATC-ATC-ATCTATCTATCTATC-GAGTAT-  796

seq1  AATACAGAAGTAGTAGTGAGAATGCAGTTCAACCAATCATCAAACTTAAG  850
      |||||||||||||||||||| |||||||||||||||||||||||||| ||
seq2  AATACAGAAGTAGTAGTGAG-ATGCAGTTCAACCAATCATCAAACTT-AG  844

seq1  ATAATATATTTTTGGTAAGGGTGTAGAGATGGCTCACTAGTTAAGAGCCC  900
      || ||||||||||||||| ||||||||||||||||||||||| |||| ||
seq2  AT-ATATATTTTTGGTAA-GGTGTAGAGATGGCTCACTAGTT-AGAG-CC  890

seq1  TGACCATTCTTGTGGAACACCCAGGTTTGAAAAACAGTTCCCCAAAAGGC  950
      ||| ||||||||||  |||||   ||||| ||||||||||||  ||| ||
seq2  TGA-CATTCTTGTG--ACACC--AGTTTG-AAAACAGTTCCC--AAAAGC  932

seq1  TCACAATTACTGGCAATTCCAGCCCTAGGGATTCAATGTCTTCTTCTATC  1000
      ||| ||||||| |||  | ||| |||| |||||||||| |||||||||| 
seq2  TCA-AATTACTTGCA--TTCAG-CCTA-GGATTCAATG-CTTCTTCTAT-  975

seq1  TTCCAAATACCAGA  1014
      |||| |||||||||
seq2  TTCC-AATACCAGA  988

seq1: chr2_15298189_15298223
seq2: B6Ng01-049F20.g_1010_1043 (reverse)

seq1  TAAATAAGGCTGCTATGAACATAGTGGAGCATGTG  35
      ||||| |||||||||||||||||||||||||||||
seq2  TAAAT-AGGCTGCTATGAACATAGTGGAGCATGTG  34