BAC Information

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BAC

Clone NameB6Ng01-049L10
Chromosome12 (Build37)
Map Location 38,936,252 - 39,062,178
singlet/doubletdoublet
Overlap geneDgkb
Upstream geneA530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049L10.bB6Ng01-049L10.g
ACCDH873896DH873897
length1,101949
definitionDH873896|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L10, 5' end.DH873897|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,061,043 - 39,062,178)(38,936,252 - 38,937,208)
sequence
gaattcttaagaacaagaatttaaagtactctaaatataaccagaagagg
tgaactatctgtgaaatcacaacagcttgaaaatgattgtagacgctaac
agttaagttatatttatattttaaataccaatattatataacatatggtt
ttaaattgtattaacatgtgtacttcaaacactattttgccttgagttta
aatctgagaagtctttatatattttcagctttattttaaactttagaaag
gcagacagtgtgttatattttaacagttaacttagatctatctaggaact
tggaaaggataagatataaaccttgcaaagtacacttttttaagctccag
caaattaaaattatctttccaaattattttgtttcatagcataagaagca
taggtagtccaaattttccttaatataattttaaaaatttgatgttctat
gtaacataaatgtatttcaaggtgagcatgctggaatatggcattaatgg
tagacaacttattgtgataaaagctttgatctgaaacacttttactagta
tcacttcaaaaagcatatttgaaaatatgaaattgtacagtggctggact
tgcctccttgctgaaattagatatctgccttgttacattaaattatttta
tgtataattcactttttcaggaaaatgttaatatcttaaatgtttatctt
agtgttttgagaattgcctaaatgtttgggactttaaataaaaacatctg
aaaaaattatagtctggaacgtacatatctaattgacttgaatctgtaga
gatgggttctattataaagcattttattaattgtatattcagtctataca
cctaagatttatttacattttccaaaattttgatctctgaattgagaaat
ctatgaaattaaatatacaaataaagcttgaaagtatagacacatcacta
tagtagatttatatataaaataatatttttaataaactagtagaaacatc
gagtacatgtcttgtttatcgcttttgacagaagctctgatctgtatcac
agactttggacttgttaaacattctctcaccagctctagcttctaagaca
a
gaattctctgctcaattgagctttacagtttaggaaatgtttttgtgact
cctttgcctcaacatggtgggtaagagaattggagaaatacagaaggatt
tcttgacctacaaatgtgcacacacacacgcacacacacgcacacacaca
tacactcacaacacatggtggcggagagatggagagagagagagagagag
aaagagagagagaatttgttgagagtataatgtatatataatcttttaaa
tttatgtgtcaggaaagcaggcactatcccactatgagaagctgaagggg
tctcacattaaaaatgattaaaaatttttctagcctcctattcagtgatt
aagtagaatgaggaataaatgaattgtggaagaaaatttcatgggttgag
tggattactaaatttagctccaggccaacttttcagtccatttagcctcc
acttacagagggtaagctggcctgacagttacatgggatttgtgtttggg
gttaggacagtgctgaagaaccaatggtgacaattttaagagacctaccc
tgaactacagatgacacagcaccatggagtagaagaacagtggtgagttt
ggttggttggacatcaccacactcaggcatgggaacctgcttgtgctggc
atgctttgtaagccatttagcctctaaagtcttcaaaaatatagatgagg
gcagttacctgctacagaactgtagctgaaaaaagctgagttacgaacaa
ttacaaagcacatttttcattgtttattttactggttaatttatttattt
aacatttcaaatgttatcctccttcccagttaaaccccctatcacctccc
caccacttccctctgcttctttgagggtgtcccataccacctggtcatgc
ctaagtacactaccttccctatggggggtcatcagctcccaggacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_39061043_39062178
seq2: B6Ng01-049L10.b_48_1148 (reverse)

seq1  TTGTCTTTAAGGAAGCTATGAGCTGGTGGAGGAAATTGTTTTTAGACAAG  50
      |||||||    ||||||| |||||||||   || | |||||    |||||
seq2  TTGTCTT---AGAAGCTA-GAGCTGGTG--AGAGAATGTTT---AACAAG  41

seq1  TTCAAAGGTCTGTGAATACAGGAATCAGGAGCTTCCTGTCAAAAAGGCGA  100
      | |||| ||||||| ||||||  |||| |||||| |||||||||  ||||
seq2  TCCAAA-GTCTGTG-ATACAG--ATCA-GAGCTT-CTGTCAAAA--GCGA  83

seq1  TAAAACAAGACATGTACTCTGATGTTTTCTTACTAGTTTTTATTTTAAAA  150
      | ||||||||||||||||| |||||||   ||||||||    | ||||||
seq2  T-AAACAAGACATGTACTC-GATGTTT--CTACTAGTT----TATTAAAA  125

seq1  ATATTTATTTTATTATATAAATCTACTATAAGTGATTGTTGTTCTATACT  200
      ||| |||||||| |||||||||||||||| ||||| |||   ||||||||
seq2  ATA-TTATTTTA-TATATAAATCTACTAT-AGTGA-TGT--GTCTATACT  169

seq1  TTCAAGCTTTTATTTGTATATTTTAATTTCATTAGATTTTCTCAATTCAG  250
      ||||||| |||||||||||| |||||||||| |||| |||||||||||||
seq2  TTCAAGC-TTTATTTGTATA-TTTAATTTCA-TAGA-TTTCTCAATTCAG  215

seq1  AGATCAAAATTTTGGAAAATGTAAATAAATCTTAGGTGTATAGACTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCAAAATTTTGGAAAATGTAAATAAATCTTAGGTGTATAGACTGAAT  265

seq1  ATACAATTAATAAAATGCTTTATAATAGAACCCATCTCTACAGATTCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAATTAATAAAATGCTTTATAATAGAACCCATCTCTACAGATTCAAG  315

seq1  TCAATTAGATATGTACGTTCCAGACTATAATTTTTTCAGATGTTTTTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGATATGTACGTTCCAGACTATAATTTTTTCAGATGTTTTTATT  365

seq1  TAAAGTCCCAAACATTTAGGCAATTCTCAAAACACTAAGATAAACATTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCCCAAACATTTAGGCAATTCTCAAAACACTAAGATAAACATTTA  415

seq1  AGATATTAACATTTTCCTGAAAAAGTGAATTATACATAAAATAATTTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTAACATTTTCCTGAAAAAGTGAATTATACATAAAATAATTTAAT  465

seq1  GTAACAAGGCAGATATCTAATTTCAGCAAGGAGGCAAGTCCAGCCACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGGCAGATATCTAATTTCAGCAAGGAGGCAAGTCCAGCCACTGT  515

seq1  ACAATTTCATATTTTCAAATATGCTTTTTGAAGTGATACTAGTAAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTTCATATTTTCAAATATGCTTTTTGAAGTGATACTAGTAAAAGTG  565

seq1  TTTCAGATCAAAGCTTTTATCACAATAAGTTGTCTACCATTAATGCCATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATCAAAGCTTTTATCACAATAAGTTGTCTACCATTAATGCCATA  615

seq1  TTCCAGCATGCTCACCTTGAAATACATTTATGTTACATAGAACATCAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCATGCTCACCTTGAAATACATTTATGTTACATAGAACATCAAAT  665

seq1  TTTTAAAATTATATTAAGGAAAATTTGGACTACCTATGCTTCTTATGCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAATTATATTAAGGAAAATTTGGACTACCTATGCTTCTTATGCTA  715

seq1  TGAAACAAAATAATTTGGAAAGATAATTTTAATTTGCTGGAGCTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACAAAATAATTTGGAAAGATAATTTTAATTTGCTGGAGCTTAAAAA  765

seq1  AGTGTACTTTGCAAGGTTTATATCTTATCCTTTCCAAGTTCCTAGATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTACTTTGCAAGGTTTATATCTTATCCTTTCCAAGTTCCTAGATAGA  815

seq1  TCTAAGTTAACTGTTAAAATATAACACACTGTCTGCCTTTCTAAAGTTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGTTAACTGTTAAAATATAACACACTGTCTGCCTTTCTAAAGTTTA  865

seq1  AAATAAAGCTGAAAATATATAAAGACTTCTCAGATTTAAACTCAAGGCAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGCTGAAAATATATAAAGACTTCTCAGATTTAAACTCAAGGCAA  915

seq1  AATAGTGTTTGAAGTACACATGTTAATACAATTTAAAACCATATGTTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGTTTGAAGTACACATGTTAATACAATTTAAAACCATATGTTATA  965

seq1  TAATATTGGTATTTAAAATATAAATATAACTTAACTGTTAGCGTCTACAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTGGTATTTAAAATATAAATATAACTTAACTGTTAGCGTCTACAA  1015

seq1  TCATTTTCAAGCTGTTGTGATTTCACAGATAGTTCACCTCTTCTGGTTAT  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAAGCTGTTGTGATTTCACAGATAGTTCACCTCTTCTGGTTAT  1065

seq1  ATTTAGAGTACTTTAAATTCTTGTTCTTAAGAATTC  1136
      ||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAGTACTTTAAATTCTTGTTCTTAAGAATTC  1101

seq1: chr12_38936252_38937208
seq2: B6Ng01-049L10.g_66_1014

seq1  GAATTCTCTGCTCAATTGAGCTTTACAGTTTAGGAAATGTTTTTGTGACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCTCAATTGAGCTTTACAGTTTAGGAAATGTTTTTGTGACT  50

seq1  CCTTTGCCTCAACATGGTGGGTAAGAGAATTGGAGAAATACAGAAGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCTCAACATGGTGGGTAAGAGAATTGGAGAAATACAGAAGGATT  100

seq1  TCTTGACCTACAAATGTGCACACACACACGCACACACACGCACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACCTACAAATGTGCACACACACACGCACACACACGCACACACACA  150

seq1  TACACTCACAACACATGGTGGCGGAGAGATGGAGAGAGAGAGAGAGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTCACAACACATGGTGGCGGAGAGATGGAGAGAGAGAGAGAGAGAG  200

seq1  AAAGAGAGAGAGAATTTGTTGAGAGTATAATGTATATATAATCTTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAGAGAGAATTTGTTGAGAGTATAATGTATATATAATCTTTTAAA  250

seq1  TTTATGTGTCAGGAAAGCAGGCACTATCCCACTATGAGAAGCTGAAGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTCAGGAAAGCAGGCACTATCCCACTATGAGAAGCTGAAGGGG  300

seq1  TCTCACATTAAAAATGATTAAAAATTTTTCTAGCCTCCTATTCAGTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACATTAAAAATGATTAAAAATTTTTCTAGCCTCCTATTCAGTGATT  350

seq1  AAGTAGAATGAGGAATAAATGAATTGTGGAAGAAAATTTCATGGGTTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAATGAGGAATAAATGAATTGTGGAAGAAAATTTCATGGGTTGAG  400

seq1  TGGATTACTAAATTTAGCTCCAGGCCAACTTTTCAGTCCATTTAGCCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTACTAAATTTAGCTCCAGGCCAACTTTTCAGTCCATTTAGCCTCC  450

seq1  ACTTACAGAGGGTAAGCTGGCCTGACAGTTACATGGGATTTGTGTTTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGAGGGTAAGCTGGCCTGACAGTTACATGGGATTTGTGTTTGGG  500

seq1  GTTAGGACAGTGCTGAAGAACCAATGGTGACAATTTTAAGAGACCTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGACAGTGCTGAAGAACCAATGGTGACAATTTTAAGAGACCTACCC  550

seq1  TGAACTACAGATGACACAGCACCATGGAGTAGAAGAACAGTGGTGAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTACAGATGACACAGCACCATGGAGTAGAAGAACAGTGGTGAGTTT  600

seq1  GGTTGGTTGGACATCACCACACTCAGGCATGGGAACCTGCTTGTGCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGGTTGGACATCACCACACTCAGGCATGGGAACCTGCTTGTGCTGGC  650

seq1  ATGCTTTGTAAGCCATTTAGCCTCTAAAGTCTTCAAAAATATAGATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTGTAAGCCATTTAGCCTCTAAAGTCTTCAAAAATATAGATGAGG  700

seq1  GCAGTTACCTGCTACAGAACTGTAGCTGAAAAAAGCTGAGTTACGAACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTACCTGCTACAGAACTGTAGCTGAAAAAAGCTGAGTTACGAACAA  750

seq1  TTACAAAGCACATTTTTCAATGTTTTATTTTACTGGTTATTTTATTTATT  800
      ||||||||||||||||||| || |||||||||||||||| ||||||||||
seq2  TTACAAAGCACATTTTTCATTG-TTTATTTTACTGGTTAATTTATTTATT  799

seq1  T-ACATTTCAAATGTTATCCTCCTTCCCAGTTAAACCCCCTATCACCTCC  849
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTCAAATGTTATCCTCCTTCCCAGTTAAACCCCCTATCACCTCC  849

seq1  CCACCACTTCCCTCCTGCTTCTTTGAGGGTGTTCCCATACACACCCTGTC  899
      ||||||||||||| ||||||||||||||||| |||||||| ||||  |||
seq2  CCACCACTTCCCT-CTGCTTCTTTGAGGGTG-TCCCATAC-CACCTGGTC  896

seq1  ATGCCTCAGTACACTAGCCTTCCCCTATGGTGGGTCATCCAGCCTCCACA  949
      |||||| ||||||||| |||| |||||||| ||||||| ||| |||| ||
seq2  ATGCCTAAGTACACTA-CCTT-CCCTATGGGGGGTCAT-CAG-CTCC-CA  941

seq1  GGACAAAA  957
      ||||||||
seq2  GGACAAAA  949