BAC Information

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BAC

Clone NameB6Ng01-049L17
Chromosome12 (Build37)
Map Location 32,359,675 - 32,396,029
singlet/doubletdoublet
Overlap geneGpr22
Upstream geneLOC100043055, Acp1, Sh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081
Downstream geneHbp1, Prkar2b, Pik3cg, 2010109K11Rik, LOC100043548
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049L17.bB6Ng01-049L17.g
ACCDH873910DH873911
length9871,120
definitionDH873910|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L17, 5' end.DH873911|Mus musculus domesticus DNA, BAC clone: B6Ng01-049L17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,359,675 - 32,360,666)(32,394,867 - 32,396,029)
sequence
gaattcatccttgaatctgaaggagacactcacacatcgagaaggttccc
ttttggacccaggattaagcacaaaccacacccaaacacatgtcttcaca
gagagaccctttattaagtggggaagaaaagttaaagaggctgctttctg
actcaggcagaaaaatggcagcaaatgaccttgcatgtataatttttaag
aagaggaaaaggggaggtttgtgttaaaatcggttagaatgcagtggtat
atttgctccagctgaacagaggacaagggactaagagataagagaggaga
tagaggacaagggagaaggggaagggaacaagggaaagggggcaggggta
tttgtccaggagggacaaaggactgcctctatggaagagacgggtgtggc
tcatagggaaatggcagtttataaaggtacaaggggaaatcccacattgt
gatgaggtgtttaattttaattgggcatgttaattaggtgaactgaaggg
ggaatttgattgctatacttcagtactttgatagctggatcttggcagtc
aggctcaggaggaggaaatggccaaataagggaataaaccttggcagcta
gctttggaaatataatctaacagtttttagcaacgtagatggaatgggag
agaaaggcaaggccagccagagccattctcgaaatgtttgaactgtccag
aaccccttcagaatccattatggatttataagaatccaccaaaattgtcc
ttaaattggaccatgcctgttgctgtaaaggggaatatatcctgatattg
tctgtatgtccactcagtgtgtcctgtaatgagaacagatttccttgatt
gggtttgattgactcttccctgacctcaggctcttggactgagtatccag
tgagactggctagatgctgtctggaggcagacacgaaagctacttacttc
atgtggggatagtcaggagaggaagaggggagggaaa
gaattcatatgttaagctgagtaacctcattgcagacatttcaggccaga
aaatcagatatcatttttataaatgactaaactcctaaaatatatatttg
catgaattagtcaaacctgtttatttcagaactttttttcaaaattattc
actggctgatgtgaacaaaatatttcacaagtaatgtataacttaaaagc
ttcctcaaaaatggacttcagaatattttttagaatttcatttttctacc
ccacaaattatttaagcaaaagaactgaatacagtctttaaaaccacttc
aaaagcatctacttcttaatacacatgaaattttaatttcctctttctac
aacacacaagagggtgtggtcacaaaataaatcagccacaggactacttt
ttactaagcttgtggctttttactttagcataatgaaccccccccccaat
ttctgtaagtctactgtaaaatgtagtgggcatacttgccatgacaaaca
aaatgcccatcatttgcccctttctctggaagtaaccccaaagttcacac
tgttggcatctcagagaatcagctagagtcgctagggcagtggtaagaca
gggagaacaaattagtgctgtgtggcatttatcctttcaaatgaacactt
gtcccttcatttaaaatctcacagggataattacacctacactaatcatg
ctagagcacactgagatagcatttacattgcatccactcacaacacggtt
ttaaatgaaatcttaaagcactggaccagaattaggtttgcactctgaga
aatcatcttattcagaaggacttctctgaaaaataattctagctattccc
aaggaagtaaacccttattgcaccgatagtaatctgcactagagagaaca
atcccataatggttatttcttcaaaatagaacaatttcctttacacaaaa
cagtagcctgatgttcccattctacatttgatcagcagttactaataaaa
ataaactagacatgatacgaaattttgtgttacaagaatatcatgtctgc
atatatcactaactgcaacatcaaattctatttgatttctagcaaaacac
ttgctcaaagaatgtgtttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32359675_32360666
seq2: B6Ng01-049L17.b_45_1031

seq1  GAATTCATCCTTGAATCTGAAGGAGACACTCACACATCGAGAAGGTTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCTTGAATCTGAAGGAGACACTCACACATCGAGAAGGTTCCC  50

seq1  TTTTGGACCCAGGATTAAGCACAAACCACACCCAAACACATGTCTTCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGACCCAGGATTAAGCACAAACCACACCCAAACACATGTCTTCACA  100

seq1  GAGAGACCCTTTATTAAGTGGGGAAGAAAAGTTAAAGAGGCTGCTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCTTTATTAAGTGGGGAAGAAAAGTTAAAGAGGCTGCTTTCTG  150

seq1  ACTCAGGCAGAAAAATGGCAGCAAATGACCTTGCATGTATAATTTTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGCAGAAAAATGGCAGCAAATGACCTTGCATGTATAATTTTTAAG  200

seq1  AAGAGGAAAAGGGGAGGTTTGTGTTAAAATCGGTTAGAATGCAGTGGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAAAGGGGAGGTTTGTGTTAAAATCGGTTAGAATGCAGTGGTAT  250

seq1  ATTTGCTCCAGCTGAACAGAGGACAAGGGACTAAGAGATAAGAGAGGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTCCAGCTGAACAGAGGACAAGGGACTAAGAGATAAGAGAGGAGA  300

seq1  TAGAGGACAAGGGAGAAGGGGAAGGGAACAAGGGAAAGGGGGCAGGGGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGACAAGGGAGAAGGGGAAGGGAACAAGGGAAAGGGGGCAGGGGTA  350

seq1  TTTGTCCAGGAGGGACAAAGGACTGCCTCTATGGAAGAGACGGGTGTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCAGGAGGGACAAAGGACTGCCTCTATGGAAGAGACGGGTGTGGC  400

seq1  TCATAGGGAAATGGCAGTTTATAAAGGTACAAGGGGAAATCCCACATTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGGGAAATGGCAGTTTATAAAGGTACAAGGGGAAATCCCACATTGT  450

seq1  GATGAGGTGTTTAATTTTAATTGGGCATGTTAATTAGGTGAACTGAAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGTGTTTAATTTTAATTGGGCATGTTAATTAGGTGAACTGAAGGG  500

seq1  GGAATTTGATTGCTATACTTCAGTACTTTGATAGCTGGATCTTGGCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTGATTGCTATACTTCAGTACTTTGATAGCTGGATCTTGGCAGTC  550

seq1  AGGCTCAGGAGGAGGAAATGGCCAAATAAGGGAATAAACCTTGGCAGCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGGAGGAGGAAATGGCCAAATAAGGGAATAAACCTTGGCAGCTA  600

seq1  GCTTTGGAAATATAATCTAACAGTTTTTAGCAACGTAGATGGAATGGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGAAATATAATCTAACAGTTTTTAGCAACGTAGATGGAATGGGAG  650

seq1  AGAAAGGCAAGGCCAGCCAGAGCCATTCTCGAAATGTTTGAACTGTCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGCAAGGCCAGCCAGAGCCATTCTCGAAATGTTTGAACTGTCCAG  700

seq1  AACCCCTTCAGAATCCATTATGGATTTATAAGAATCCACCAAAATTGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCTTCAGAATCCATTATGGATTTATAAGAATCCACCAAAATTGTCC  750

seq1  TTAAATTGGACCATGCCTGTTGCTGTAAAGGGGAATATATCCTGATATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTGGACCATGCCTGTTGCTGTAAAGGGGAATATATCCTGATATTG  800

seq1  TCTGTATGTCCACTCAGTGTGTCCTGTAATGAGAACAGATTTCCTTGATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATGTCCACTCAGTGTGTCCTGTAATGAGAACAGATTTCCTTGATT  850

seq1  GGGTTTGATTGACTCTTCCCTGACCTCAGGCTCTTGGACTGAGTATCCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGATTGACTCTTCCCTGACCTCAGGCTCTTGGACTGAGTATCCAG  900

seq1  TGAGACTGGCTAGATGGCTGGTCTGGAGGGCAGACACGAAAGCTACTTAC  950
      ||||||||||||||| ||| ||||||| ||||||||||||||||||||||
seq2  TGAGACTGGCTAGAT-GCT-GTCTGGA-GGCAGACACGAAAGCTACTTAC  947

seq1  TTCATGTGGGGATAGTCAGGAGAGGGAAGAAGGGGAGGGAAA  992
      ||||||||||||||||||||||| ||||| ||||||||||||
seq2  TTCATGTGGGGATAGTCAGGAGA-GGAAG-AGGGGAGGGAAA  987

seq1: chr12_32394867_32396029
seq2: B6Ng01-049L17.g_68_1187 (reverse)

seq1  AAAACACATTCTTTTGGAGCAGTTGGTGTTTTGCCTAGAAAATCAAATAG  50
      ||||||||||||||  |||||    |||||||| |||| |||||||||||
seq2  AAAACACATTCTTT--GAGCA---AGTGTTTTG-CTAG-AAATCAAATAG  43

seq1  GATATTTGATGTTTGGCAGTTTAGTGATATATATGCAAGACATGATATTC  100
         ||||||||||  |||| ||||||  |||||||| |||||||||||||
seq2  --AATTTGATGTT--GCAG-TTAGTG--ATATATGC-AGACATGATATTC  85

seq1  TTTGTAAACAACAAAATATCTGTTTATCATGTTCTTAGTTTAATTTTTTT  150
       ||||||   ||||||| ||    ||||||||   |||||||   |||||
seq2  -TTGTAA--CACAAAATTTC---GTATCATGT--CTAGTTTA---TTTTT  124

seq1  ATTTAGTAAACTGCTGATTCAAAATGTAGAATTGGGAAACATCAGGGCTA  200
      | ||||| ||||||||||   |||||||||||  || ||||||| |||||
seq2  A-TTAGT-AACTGCTGAT--CAAATGTAGAAT--GGGAACATCA-GGCTA  167

seq1  CCTTGTTTTTGGTGTAAAGGGAAATTGTTCTATTTTTGAAGAAATAACCA  250
      |  ||||||  ||||||| ||||||||||||| |||||||||||||||||
seq2  C--TGTTTT--GTGTAAA-GGAAATTGTTCTA-TTTTGAAGAAATAACCA  211

seq1  TATGGGGATTGTTCCTCTCTAGTGCAGATTACTATCGGTGCAATAAGGGT  300
      |   ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTATGGGATTGTT-CTCTCTAGTGCAGATTACTATCGGTGCAATAAGGGT  260

seq1  TTACTTCCTTGGGAATAGCTAAGAATTAATTTTTCAGAGAAAGTCCTTCT  350
      |||||||||||||||||||| |||||| ||||||||||| ||||||||||
seq2  TTACTTCCTTGGGAATAGCT-AGAATT-ATTTTTCAGAG-AAGTCCTTCT  307

seq1  GAATAAGATGATTTCTCAGAGTGCAAACCTAATTCTGGTCCAGTGCTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGATGATTTCTCAGAGTGCAAACCTAATTCTGGTCCAGTGCTTTA  357

seq1  AGATTTCATTTAAAACCGTGTTGTGAGTGGATGCAATGTAAATGCTATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTCATTTAAAACCGTGTTGTGAGTGGATGCAATGTAAATGCTATCT  407

seq1  CAGTGTGCTCTAGCATGATTAGTGTAGGTGTAATTATCCCTGTGAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTGCTCTAGCATGATTAGTGTAGGTGTAATTATCCCTGTGAGATTT  457

seq1  TAAATGAAGGGACAAGTGTTCATTTGAAAGGATAAATGCCACACAGCACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGAAGGGACAAGTGTTCATTTGAAAGGATAAATGCCACACAGCACT  507

seq1  AATTTGTTCTCCCTGTCTTACCACTGCCCTAGCGACTCTAGCTGATTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTCTCCCTGTCTTACCACTGCCCTAGCGACTCTAGCTGATTCTC  557

seq1  TGAGATGCCAACAGTGTGAACTTTGGGGTTACTTCCAGAGAAAGGGGCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGCCAACAGTGTGAACTTTGGGGTTACTTCCAGAGAAAGGGGCAA  607

seq1  ATGATGGGCATTTTGTTTGTCATGGCAAGTATGCCCACTACATTTTACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGGCATTTTGTTTGTCATGGCAAGTATGCCCACTACATTTTACAG  657

seq1  TAGACTTACAGAAATTGGGGGGGGGGTTCATTATGCTAAAGTAAAAAGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACTTACAGAAATTGGGGGGGGGGTTCATTATGCTAAAGTAAAAAGCC  707

seq1  ACAAGCTTAGTAAAAAGTAGTCCTGTGGCTGATTTATTTTGTGACCACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTTAGTAAAAAGTAGTCCTGTGGCTGATTTATTTTGTGACCACAC  757

seq1  CCTCTTGTGTGTTGTAGAAAGAGGAAATTAAAATTTCATGTGTATTAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTGTGTGTTGTAGAAAGAGGAAATTAAAATTTCATGTGTATTAAGA  807

seq1  AGTAGATGCTTTTGAAGTGGTTTTAAAGACTGTATTCAGTTCTTTTGCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGATGCTTTTGAAGTGGTTTTAAAGACTGTATTCAGTTCTTTTGCTT  857

seq1  AAATAATTTGTGGGGTAGAAAAATGAAATTCTAAAAAATATTCTGAAGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTGTGGGGTAGAAAAATGAAATTCTAAAAAATATTCTGAAGTC  907

seq1  CATTTTTGAGGAAGCTTTTAAGTTATACATTACTTGTGAAATATTTTGTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTGAGGAAGCTTTTAAGTTATACATTACTTGTGAAATATTTTGTT  957

seq1  CACATCAGCCAGTGAATAATTTTGAAAAAAAGTTCTGAAATAAACAGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATCAGCCAGTGAATAATTTTGAAAAAAAGTTCTGAAATAAACAGGTT  1007

seq1  TGACTAATTCATGCAAATATATATTTTAGGAGTTTAGTCATTTATAAAAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATTCATGCAAATATATATTTTAGGAGTTTAGTCATTTATAAAAA  1057

seq1  TGATATCTGATTTTCTGGCCTGAAATGTCTGCAATGAGGTTACTCAGCTT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATCTGATTTTCTGGCCTGAAATGTCTGCAATGAGGTTACTCAGCTT  1107

seq1  AACATATGAATTC  1163
      |||||||||||||
seq2  AACATATGAATTC  1120