BAC Information

Click to search

BAC

Clone NameB6Ng01-049P02
Chromosome12 (Build37)
Map Location 61,613,642 - 61,732,943
singlet/doubletdoublet
Overlap geneLOC665665, Ppia-ps12_475.1
Upstream geneLOC665644, EG622488
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049P02.bB6Ng01-049P02.g
ACCDH874047DH874048
length820999
definitionDH874047|Mus musculus domesticus DNA, BAC clone: B6Ng01-049P02, 5' end.DH874048|Mus musculus domesticus DNA, BAC clone: B6Ng01-049P02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,732,107 - 61,732,943)(61,613,642 - 61,614,646)
sequence
agtaaataaagctgaaaatcatttataaatacatgcctctgcgaaacata
aattaaaccaaattagggaaccaaactaatttcaaatgaaaaattattac
tgaaatcctgctagatactggcaactagctgaaataactttatttagtgt
aagtctcatagaaatgtcacatcatcctgaaggggagtgtcagagtattt
tacttttgaatggttgcactcatttatttcatcttcagatggttaattta
tagaaatcttagatgtactgattcctacacatataagcatctgtgcacat
gccgcagtgatcccttatgatgcataaaggaaaatctcaaaaactatctt
aaacattgtaaataccttgccaatcacttattagttttgctcccgagttt
ctctgttcaggtatcaacttttacatggtatgactttgtcaactcccaaa
tgattaagtgaaatagatatgcatcaatttatatcaataacaagctggct
ttgttaccactgatttaatgttttaaaccttataatgtctctctatagat
gcgtagataataatcgcagacacatggcattttgtcaatggttatgaaca
gatgttgaaaatataggatcttcactcctcttctttacattttctaaaat
atgctagctttgttctattggacactggttaaacacgatgttcttaccct
ctaactgtcagtgctgccatgctcatgttctgaaaaaaaagaaaaagcag
gttgtccgcagtctcagcttctagtcttcagctttctaaaagtacagcgt
ttgaaccttacttagaaact
gaattctttctgtgttgatcttctgattgggtcaaacaaattccagagta
ggtagtcctggctgtttgcctaaaaggagaaggatccatgagaaaaaagg
gcaaaggcaaaaccttaaccccaatgaagagagtaagcacccccggcccc
aaatcagggtaggaaggaagactcagtgactatgggcttttccaagagat
ctaggtttaatttacaaacctcagcaactctagttccaggggattgaaga
tgcccctttcttgcttcggagctcactaggcatgcacaaatatgcacaga
ggcaaaatacccatacacttaaccataaataaatcttaaaaaaaaaaaaa
aaaaaacaagaggaaaccatgaatatccatgtggaggaatgtctgtgtgg
ctgtcttcctttggaccacagatctcaatccttttattattccctaagaa
aacataggggcagggccctccatcctttcgccccaccccttcatatcttc
ctgagctcaagtgtttaaagattatgtgattgtgcttagcagaaacatag
ttactttatgcaaggaaactaggctataatggaaaagcatttgaattttc
taaattatgaagatattttaatacctttagagttatgattgtataagtat
tagaatgttacctataacatatctttaaaacttttcactaaatatcctgt
ttcctgtagcaatttcgtccattttaaaattttcaatctaggaacaaagg
tggttaagtaaaagaatttacaagggtcaggacttaaacaaatttggaaa
tcttaaggaagttcctgaaacgtataagagtcacaagaccactccctacc
ccaataagtttgcataagcaataacaaccaaagaggagctgcaatatccc
aaggcagagcagcttctacatcatgcgagtctctaaagaagcactttcat
gagctggaatagtatttgggtgacccagctatcttcagcattcatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61732107_61732943
seq2: B6Ng01-049P02.b_54_873 (reverse)

seq1  AGTTTCTCTAAAGTAAGTGTTCCAAACGCTGTACCTTTTTAGAAAGCTGA  50
      |||||||   ||||||| ||| ||||||||||||  ||||||||||||||
seq2  AGTTTCT---AAGTAAG-GTT-CAAACGCTGTAC--TTTTAGAAAGCTGA  43

seq1  AGACTAGAAGGCTGAGGACTGGCGGGACAACCTGCTTTTTCTTTTGTTTT  100
      ||||||||| ||||| |||||   ||||||||||||||||||||| ||||
seq2  AGACTAGAA-GCTGA-GACTG--CGGACAACCTGCTTTTTCTTTT-TTTT  88

seq1  CAGGAACCATGAGCATGGGCAGCACTTGACCAGTTAGAGGGTAAGAACAT  150
      |||  | ||||||||| |||||||| ||| ||||||||||||||||||||
seq2  CAG--AACATGAGCAT-GGCAGCAC-TGA-CAGTTAGAGGGTAAGAACAT  133

seq1  CGTGTTTAACCAGTGTCCAATAGAACACAGCTTAGCATATTTTAGAAAAT  200
      ||||||||||||||||||||||||||| ||| ||||||||||||||||||
seq2  CGTGTTTAACCAGTGTCCAATAGAACAAAGC-TAGCATATTTTAGAAAAT  182

seq1  GTAAAGAAGA-GAGTG-AGATCCTATATTTTCAACATCTGTTCATAACCA  248
      |||||||||| ||||| |||||||||||||||||||||||||||||||||
seq2  GTAAAGAAGAGGAGTGAAGATCCTATATTTTCAACATCTGTTCATAACCA  232

seq1  TTGACAAAATGCCATGTTGTCTGCGATTATTATCTACGCATCTATAGAGA  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TTGACAAAATGCCATG-TGTCTGCGATTATTATCTACGCATCTATAGAGA  281

seq1  GACATTATAAGGTTTAAAACATTAAATCAGTGGTAACAAAGCCAGCTTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATAAGGTTTAAAACATTAAATCAGTGGTAACAAAGCCAGCTTGT  331

seq1  TATTGATATAAATTGATGCATATCTATTTCACTTAATCATTTGGGAGTTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGATATAAATTGATGCATATCTATTTCACTTAATCATTTGGGAGTTG  381

seq1  ACAAAGTCATACCATGTAAAAGTTGATACCTGAACAGAGAAACTCGGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGTCATACCATGTAAAAGTTGATACCTGAACAGAGAAACTCGGGAG  431

seq1  CAAAACTAATAAGTGATTGGCAAGGTATTTACAATGTTTAAGATAGTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAATAAGTGATTGGCAAGGTATTTACAATGTTTAAGATAGTTTT  481

seq1  TGAGATTTTCCTTTATGCATCATAAGGGATCACTGCGGCATGTGCACAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTCCTTTATGCATCATAAGGGATCACTGCGGCATGTGCACAGA  531

seq1  TGCTTATATGTGTAGGAATCAGTACATCTAAGATTTCTATAAATTAACCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTATATGTGTAGGAATCAGTACATCTAAGATTTCTATAAATTAACCA  581

seq1  TCTGAAGATGAAATAAATGAGTGCAACCATTCAAAAGTAAAATACTCTGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGATGAAATAAATGAGTGCAACCATTCAAAAGTAAAATACTCTGA  631

seq1  CACTCCCCTTCAGGATGATGTGACATTTCTATGAGACTTACACTAAATAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCCTTCAGGATGATGTGACATTTCTATGAGACTTACACTAAATAA  681

seq1  AGTTATTTCAGCTAGTTGCCAGTATCTAGCAGGATTTCAGTAATAATTTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTTCAGCTAGTTGCCAGTATCTAGCAGGATTTCAGTAATAATTTT  731

seq1  TCATTTGAAATTAGTTTGGTTCCCTAATTTGGTTTAATTTATGTTTCGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGAAATTAGTTTGGTTCCCTAATTTGGTTTAATTTATGTTTCGCA  781

seq1  GAGGCATGTATTTATAAATGATTTTCAGCTTTATTTACT  837
      |||||||||||||||||||||||||||||||||||||||
seq2  GAGGCATGTATTTATAAATGATTTTCAGCTTTATTTACT  820

seq1: chr12_61613642_61614646
seq2: B6Ng01-049P02.g_67_1065

seq1  GAATTCTTTCTGTGTTGATCTTCTGATTGGGTCAAACAAATTCCAGAGTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTGTGTTGATCTTCTGATTGGGTCAAACAAATTCCAGAGTA  50

seq1  GGTAGTCCTGGCTGTTTGCCTAAAAGGAGAAGGATCCATGAGAAAAAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTCCTGGCTGTTTGCCTAAAAGGAGAAGGATCCATGAGAAAAAAGG  100

seq1  GCAAAGGCAAAACCTTAACCCCAATGAAGAGAGTAAGCACCCCCGGCCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCAAAACCTTAACCCCAATGAAGAGAGTAAGCACCCCCGGCCCC  150

seq1  AAATCAGGGTAGGAAGGAAGACTCAGTGACTATGGGCTTTTCCAAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGGTAGGAAGGAAGACTCAGTGACTATGGGCTTTTCCAAGAGAT  200

seq1  CTAGGTTTAATTTACAAACCTCAGCAACTCTAGTTCCAGGGGATTGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGTTTAATTTACAAACCTCAGCAACTCTAGTTCCAGGGGATTGAAGA  250

seq1  TGCCCCTTTCTTGCTTCGGAGCTCACTAGGCATGCACAAATATGCACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCTTTCTTGCTTCGGAGCTCACTAGGCATGCACAAATATGCACAGA  300

seq1  GGCAAAATACCCATACACTTAACCATAAATAAATCTTAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAATACCCATACACTTAACCATAAATAAATCTTAAAAAAAAAAAAA  350

seq1  AAAAAACAAGAGGAAACCATGAATATCCATGTGGAGGAATGTCTGTGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAGAGGAAACCATGAATATCCATGTGGAGGAATGTCTGTGTGG  400

seq1  CTGTCTTCCTTTGGACCACAGATCTCAATCCTTTTATTATTCCCTAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCCTTTGGACCACAGATCTCAATCCTTTTATTATTCCCTAAGAA  450

seq1  AACATAGGGGCAGGGCCCTCCATCCTTTCGCCCCACCCCTTCATATCTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGGGGCAGGGCCCTCCATCCTTTCGCCCCACCCCTTCATATCTTC  500

seq1  CTGAGCTCAAGTGTTTAAAGATTATGTGATTGTGCTTAGCAGAAACATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCTCAAGTGTTTAAAGATTATGTGATTGTGCTTAGCAGAAACATAG  550

seq1  TTACTTTATGCAAGGAAACTAGGCTATAATGGAAAAGCATTTGAATTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTATGCAAGGAAACTAGGCTATAATGGAAAAGCATTTGAATTTTC  600

seq1  TAAATTATGAAGATATTTTAATACCTTTAGAGTTATGATTGTATAAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTATGAAGATATTTTAATACCTTTAGAGTTATGATTGTATAAGTAT  650

seq1  TAGAATGTTACCTATAACATATCTTTAAAACTTTTCACTAAATATCCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTTACCTATAACATATCTTTAAAACTTTTCACTAAATATCCTGT  700

seq1  TTCCTGTAGCAATTTCGTCCATTTTAAAATTTTCAATCTAGGAACAAAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTAGCAATTTCGTCCATTTTAAAATTTTCAATCTAGGAACAAAGG  750

seq1  TGGTTAAGTAAAAGAATTTACAAGGGTCAGGACTTAAACAAATTTGGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAAGTAAAAGAATTTACAAGGGTCAGGACTTAAACAAATTTGGAAA  800

seq1  TCTT-AGGAAGTTCCTGAAACGTATAAGAGTCACAAGA-CACTCCCTACC  848
      |||| ||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTTAAGGAAGTTCCTGAAACGTATAAGAGTCACAAGACCACTCCCTACC  850

seq1  CC-ATAAGTTTGCATAAGCAATAACAACCAAAGAGGAGCTGCAATATCCC  897
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATAAGTTTGCATAAGCAATAACAACCAAAGAGGAGCTGCAATATCCC  900

seq1  CAAAAGGCAGAGCAGCTTCTACATCATGCAGAGTCTCTAAAGATGCAACT  947
         |||||||||||||||||||||||||| ||||||||||||| || |||
seq2  ---AAGGCAGAGCAGCTTCTACATCATGC-GAGTCTCTAAAGAAGC-ACT  945

seq1  TTCATGAGCTTGGATTAAGTATTTGGGTGACACAGCTATCTTTCAGTCAT  997
      |||||||||| | ||  |||||||||||||| |||||||| ||||| |||
seq2  TTCATGAGCTGGAAT--AGTATTTGGGTGACCCAGCTATC-TTCAG-CAT  991

seq1  TCATGCAT  1005
      ||||||||
seq2  TCATGCAT  999