BAC Information

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BAC

Clone NameB6Ng01-050E16
Chromosome12 (Build37)
Map Location 8,369,382 - 8,556,609
singlet/doubletdoublet
Overlap geneBC106175, Rhob, Slc7a15
Upstream geneLOC668380, EG668388, Apob, 1110057K04Rik, Gdf7, Hs1bp3
Downstream geneLOC100043154, Pum2, F730043H23, Sdc1, Laptm4a, Matn3, Wdr35, Ttc32, LOC633030, LOC100042238
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050E16.bB6Ng01-050E16.g
ACCDH874282DH874283
length7231,012
definitionDH874282|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E16, 5' end.DH874283|Mus musculus domesticus DNA, BAC clone: B6Ng01-050E16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,369,382 - 8,370,103)(8,555,587 - 8,556,609)
sequence
gaattctaggctaactgaaggtgtgcgactaagacactctggagcaggaa
gtaaaatatatacacaaagattccacaagagcacagcataggaagagacc
gtgactgagaggagctgtcgctttctctggcacaaagaccacaggctcat
cttctccctgcctctgcttaaagagaagacacatttagccaaatttacca
actaaaaagagagtgctggccagtcttttaacaacttgacacagaaacta
gcattatctgagaggagggatcctcaattgagaaaatgtctccacaatat
ccagctgtggggctttttttttaattagtgactgatggggtagggcctag
cccattgtgggtggtgccatccctggctggtggtcctgggtgctataggg
aagtactctgagcaaaccatggggagcaagccagtaagtagcacccttcc
atggcttctgcatcagctcctgtctctaggttcctgccctggttaagttg
cctccctagtgctatgatcaagtgtgggcgtgtgccaccactgcagagca
tgtgtgttttctaagctggtaaatgaaacccagcagcctagaaaaaggag
aaaagaatagcagtgggtggaatgttgagactcagaggttgcttgcatga
aactgaaacatttttaaaattaatttattggggttttgttttttgttttt
tattgttttgtgtatgggtgttt
gaattctttagccatggggaaaacatgagacatgggctccagtctctgca
gacttcctgtgccatacagatacccacaaacacccgggaaagccttttcc
tgctcctctcacttctcacctggagctaagtgtggtggaagacatccagt
aagcatcctgtgctggctgctgcaacctccctcttgttcttaattagtgt
aaaggaaaaacaacctcagcaactctagcccctcccattccatttcagga
gcacgcactctcagccactggggttgtatttcttccccagtggctgtcta
cattttggttccggtcaacccttgttctgactcttgatgggcctcaattt
gacttttaggttgattagtatatagggtgacacctgagatttttgtggac
ttaaatcatgcagttcaaacaatttttctcagttacttctaggttttatt
atttgtattgaattctagcaatttttttcctggcaactactgactttttt
ctttttaatttgttaatattacacacacacacatgcacacacacacacac
acacacacacacacatacacacacacacacactcacatgcactcacacca
agggtattttgagataaggtcttgctgtgtaggtaagattggccttgatc
tgatcctcttatctttgggtccctggagattacaggcacttgtttgctat
aaacagattaacctttcttttctttgcttctctctctctctctctctctc
tctctctctctctctccccacccccctctggtgtgatgtgtatattctgt
tgggaatctacctagaacttcatcacactgttatatttcatattgtggta
aataatgagaataagctttctggaagttagatgccattgcattagcgaga
caaaccttgtcttgaaaaaatagataaatacactgttgatttcattttat
ggctattttaaaaatatattgggctagacagggtgcacactctttatccc
gccctgggaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_8369382_8370103
seq2: B6Ng01-050E16.b_49_771

seq1  GAATTCTAGGCTAACTGAAGGTGTGCGACTAAGACACTCTGGAGCAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGCTAACTGAAGGTGTGCGACTAAGACACTCTGGAGCAGGAA  50

seq1  GTAAAATATATACACAAAGATTCCACAAGAGCACAGCATAGGAAGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATATATACACAAAGATTCCACAAGAGCACAGCATAGGAAGAGACC  100

seq1  GTGACTGAGAGGAGCTGTCGCTTTCTCTGGCACAAAGACCACAGGCTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACTGAGAGGAGCTGTCGCTTTCTCTGGCACAAAGACCACAGGCTCAT  150

seq1  CTTCTCCCTGCCTCTGCTTAAAGAGAAGACACATTTAGCCAAATTTACCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCCTGCCTCTGCTTAAAGAGAAGACACATTTAGCCAAATTTACCA  200

seq1  ACTAAAAAGAGAGTGCTGGCCAGTCTTTTAACAACTTGACACAGAAACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAAAGAGAGTGCTGGCCAGTCTTTTAACAACTTGACACAGAAACTA  250

seq1  GCATTATCTGAGAGGAGGGATCCTCAATTGAGAAAATGTCTCCACAATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCTGAGAGGAGGGATCCTCAATTGAGAAAATGTCTCCACAATAT  300

seq1  CCAGCTGTGGGGCTTTTTTTTTAATTAGTGACTGATGGGGTAGGGCCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTGTGGGGCTTTTTTTTTAATTAGTGACTGATGGGGTAGGGCCTAG  350

seq1  CCCATTGTGGGTGGTGCCATCCCTGGCTGGTGGTCCTGGGTGCTATAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTGTGGGTGGTGCCATCCCTGGCTGGTGGTCCTGGGTGCTATAGGG  400

seq1  AAGTACTCTGAGCAAACCATGGGGAGCAAGCCAGTAAGTAGCACCCTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACTCTGAGCAAACCATGGGGAGCAAGCCAGTAAGTAGCACCCTTCC  450

seq1  ATGGCTTCTGCATCAGCTCCTGTCTCTAGGTTCCTGCCCTGGTTAAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTCTGCATCAGCTCCTGTCTCTAGGTTCCTGCCCTGGTTAAGTTG  500

seq1  CCTCCCTAGTGCTATGATCAAGTGTGGGCGTGTGCCACCACTGCAGAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTAGTGCTATGATCAAGTGTGGGCGTGTGCCACCACTGCAGAGCA  550

seq1  TGTGTGTTTTCTAAGCTGGTAAATGAAACCCAGCAGCCTAGAAAAAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTTCTAAGCTGGTAAATGAAACCCAGCAGCCTAGAAAAAGGAG  600

seq1  AAAAGAATAGCAGTGGGTGGAATGTTGAGACTCAGAGGTTGCTTGCATGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAATAGCAGTGGGTGGAATGTTGAGACTCAGAGGTTGCTTGCATGA  650

seq1  AACTGAAACATTTTTAAAATTAATTTATTGGGGTTTTG-TTTTTGTTTTT  699
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AACTGAAACATTTTTAAAATTAATTTATTGGGGTTTTGTTTTTTGTTTTT  700

seq1  TATTGTTTTGTGTATGGGTGTTT  722
      |||||||||||||||||||||||
seq2  TATTGTTTTGTGTATGGGTGTTT  723

seq1: chr12_8555587_8556609
seq2: B6Ng01-050E16.g_68_1079 (reverse)

seq1  GCCTCCCAAGTGCTGGGATTAAAGATGTGTGCCACCACTGTCTAGCCCCA  50
      ||||||| || || |||| |||||| ||||| |||| ||||||||||| |
seq2  GCCTCCC-AGGGC-GGGA-TAAAGA-GTGTG-CACC-CTGTCTAGCCCAA  44

seq1  TATAATTTCTTAACATAGCATTAAAAATGAAATCCAACAGTGTATTTATC  100
      ||||  || |||| |||||  | |||||||||| ||||||||||||||||
seq2  TATA--TTTTTAAAATAGCCAT-AAAATGAAAT-CAACAGTGTATTTATC  90

seq1  TAATTTTATCAAGACAAAGGTTTGTCTCGCTAATGCAATGGCATCTAACT  150
      | ||||| ||||||| ||||||||||||||||||||||||||||||||||
seq2  T-ATTTTTTCAAGAC-AAGGTTTGTCTCGCTAATGCAATGGCATCTAACT  138

seq1  TTCAGAAAGCTTATTCACATTATTTACCACAATATGAAATATAACAGTGT  200
      | |||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TCCAGAAAGCTTATTCTCATTATTTACCACAATATGAAATATAACAGTGT  188

seq1  GATGAAGTTCTAGGTTAGATTCCCAACAGAATATACACATCACACCAGAG  250
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATGAAGTTCTAGG-TAGATTCCCAACAGAATATACACATCACACCAGAG  237

seq1  GGGGGTGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGC  287

seq1  AAAGAAAAGAAAGGTTAATCTGTTTATAGC-AACAAGTGCCTGTAATCTC  349
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGAAAAGAAAGGTTAATCTGTTTATAGCAAACAAGTGCCTGTAATCTC  337

seq1  CAGGGACCC-AAGATAAGAGGATCAGATCAAGGCCAATCTTACCTACACA  398
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGACCCAAAGATAAGAGGATCAGATCAAGGCCAATCTTACCTACACA  387

seq1  GCAAGACCTTATCTCAAAATACCCTTGGTGTGAGTGCATGTGAGTGTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGACCTTATCTCAAAATACCCTTGGTGTGAGTGCATGTGAGTGTGTG  437

seq1  TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCATGTGTGTG  487

seq1  TGTGTAATATTAACAAATTAAAAAGAAAAAAGTCAGTAGTTGCCAGGAAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAATATTAACAAATTAAAAAGAAAAAAGTCAGTAGTTGCCAGGAAA  537

seq1  AAAATTGCTAGAATTCAATACAAATAATAAAACCTAGAAGTAACTGAGAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGCTAGAATTCAATACAAATAATAAAACCTAGAAGTAACTGAGAA  587

seq1  AAATTGTTTGAACTGCATGATTTAAGTCCACAAAAATCTCAGGTGTCACC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTTGAACTGCATGATTTAAGTCCACAAAAATCTCAGGTGTCACC  637

seq1  CTATATACTAATCAACCTAAAAGTCAAATTGAGGCCCATCAAGAGTCAGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATACTAATCAACCTAAAAGTCAAATTGAGGCCCATCAAGAGTCAGA  687

seq1  ACAAGGGTTGACCGGAACCAAAATGTAGACAGCCACTGGGGAAGAAATAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGGTTGACCGGAACCAAAATGTAGACAGCCACTGGGGAAGAAATAC  737

seq1  AACCCCAGTGGCTGAGAGTGCGTGCTCCTGAAATGGAATGGGAGGGGCTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAGTGGCTGAGAGTGCGTGCTCCTGAAATGGAATGGGAGGGGCTA  787

seq1  GAGTTGCTGAGGTTGTTTTTCCTTTACACTAATTAAGAACAAGAGGGAGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGCTGAGGTTGTTTTTCCTTTACACTAATTAAGAACAAGAGGGAGG  837

seq1  TTGCAGCAGCCAGCACAGGATGCTTACTGGATGTCTTCCACCACACTTAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGCAGCCAGCACAGGATGCTTACTGGATGTCTTCCACCACACTTAG  887

seq1  CTCCAGGTGAGAAGTGAGAGGAGCAGGAAAAGGCTTTCCCGGGTGTTTGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGTGAGAAGTGAGAGGAGCAGGAAAAGGCTTTCCCGGGTGTTTGT  937

seq1  GGGTATCTGTATGGCACAGGAAGTCTGCAGAGACTGGAGCCCATGTCTCA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATCTGTATGGCACAGGAAGTCTGCAGAGACTGGAGCCCATGTCTCA  987

seq1  TGTTTTCCCCATGGCTAAAGAATTC  1023
      |||||||||||||||||||||||||
seq2  TGTTTTCCCCATGGCTAAAGAATTC  1012