BAC Information

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BAC

Clone NameB6Ng01-050G15
Chromosome12 (Build37)
Map Location 73,410,610 - 73,571,355
singlet/doubletdoublet
Overlap geneRtn1, Lrrc9
Upstream geneDact1, LOC100041190, Daam1, LOC666213, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik, 4930403N07Rik
Downstream gene1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050G15.bB6Ng01-050G15.g
ACCDH874368DH874369
length1,190989
definitionDH874368|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G15, 5' end.DH874369|Mus musculus domesticus DNA, BAC clone: B6Ng01-050G15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,570,157 - 73,571,355)(73,410,610 - 73,411,597)
sequence
gaattcatatttttaaaaattgtaaacaaaaaaaatgcataccactgtag
tgtactcaaattcaacgatgtactctggcaaaacgaggtcatggtcgaag
acaaaccatttgtactgccggtagccacagtcgcaagttctttgtcctat
gatagaatctagagttaaaaagcaaagtctggcacgacaaacactcaaaa
tacagtaaacgtttaagctccagtgtagatgaagaagtgacaacaaatcc
ttcccaacaactccccacaattaccaaattgcggctgttatgaagtcctc
gctcccgccctttccccacagagcaggatcgatgtttagcttatccttct
cctctgaaagcttcattttaccaaggactaagtgaccgtggaattttgat
aaactcagcactcttaagatctttattagaggttcatttttaatcctttg
aaaactaatcgtttgcacacactcacacatgaaatcccccatccccatga
cttctgcaaccactgattcaaaaactgcagggcagaagtatttggattta
gaaaagtatttgtagtgagctgtacatttgtcaggattcctggaacaata
agggtagccatggtttgctgcatttcatctatactgtgttaggtattatg
gagattgtgtcatgtacccaggaaggctgtgtaggtggcatgcagacatc
atgccatttgacataaaggacttaagaatgcaagaagtttttttttatct
atacgtgtgtctgtcccccctcccactctgtgtgtgtgtattgtatgtac
tctagaacagatactgagattttaatgtataggtgagtatacacacacat
acacacatacctatcacacataaattattgaaataaatttcacacatatt
attatatgataacagaaaattattaatatccagaagtaggttttcagaga
aaagtttataggcctggtaggttagaataaacatgcctataagttaagaa
ctgttgtattagtgaggaatggtttgtactgaaagtgatgaagttgcccc
gtcttcctcttggcggacatacttagaccagtgtctcttaggagacaaac
accaggtaacatgggataggtggcttattggatggggctcctggtacgaa
ctgataactctgggccaggaaaccttcgcatgggatggtg
gaattccatcttcaggagccagacagtgaaagaagagaacaacctcccac
aagttgtcctctgaggtccacaacaatgtataacttccaacgcaataaaa
ttgaactgtttattattaattattattactactattattagcattattat
tggcactagcattattactattattatctagaggacgggggggaaagttt
ctacatcttgctgcaaaacactgcaaatagaatcaaacagaggtcaataa
agacttactatatgccaggcaatggtttgctgacctgattctttcttaca
acagttttatatattaaatctcagagtctcaatgtctacacataaataaa
ctacacacctgtgtaaacacacacacacatacatacatacatacatacac
acacacacacacacacacacacacacacacagcatgtacagtatgaaaat
cctggacacactgaaagaatataccagacaaaggtgccatcttctgtgaa
agtggtcatttgggaatacctgtaaaatacctatacctagcatgaaaact
aagtcagaaacaatcaatgtttcacatggtgaatgtctggcctgagcaac
agacaagattgacgctagcaaacttcctcaatagtggggcgggcgggagc
gagctgatggagttagggcctgaagcacttccctaagaagtgtgccagcc
gctttcaagtgcccacgtcccaaaagctactcttagttaaagcatacaat
gttccagacactacagcacaccctctggttgtagaaagaacaatgcaaag
accaacacaggaagcacaacatcacagaggttctgctctcactagatgac
accaacctgggtagacagggaaagtcaagaaaggaagtgtggaggcagac
cctgacccgtccactggtgaggggctgcaaggagaggcacactatgcaac
atctcatttcaaatttgcattttaccagggtcctctctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73570157_73571355
seq2: B6Ng01-050G15.b_46_1235 (reverse)

seq1  CACCATCCTCATTGCGAAGGTTTTTCTTGGCCAGAGTATTCAGGCTCGTG  50
      |||||||| || |||||||| ||| || | |||||||  ||| | |||| 
seq2  CACCATCC-CA-TGCGAAGG-TTTCCTGGCCCAGAGTTATCA-GTTCGT-  45

seq1  ACCAGGAG-CCCATCAATAAAGCCAACTATCCCATGGTTAACTCGGTGTT  99
      |||||||| |||||| |  |||||| ||||||||| |||| || ||||||
seq2  ACCAGGAGCCCCATCCAATAAGCCACCTATCCCAT-GTTACCT-GGTGTT  93

seq1  TGT-TCCTCAGAGACA-TGTGCTAAGTATGTCTGCCAAAGAGAAAGAC-G  146
      ||| |||| ||||||| ||  ||||||||||| ||| ||||| ||||| |
seq2  TGTCTCCTAAGAGACACTGGTCTAAGTATGTCCGCC-AAGAGGAAGACGG  142

seq1  GGCGACTTCATCACTCTCAGTACAAACCATTCCTACCTAATACAACAGTC  196
      ||| ||||||||||| ||||||||||||||||||  ||||||||||||| 
seq2  GGCAACTTCATCACTTTCAGTACAAACCATTCCTCACTAATACAACAGTT  192

seq1  TATAACTTATA-GCATGGTCTAATCTGAACCTAACAAGGCCTATAAACTT  245
        ||||||||| |||| || || ||| ||||| || ||||||||||||||
seq2  CTTAACTTATAGGCAT-GTTTATTCT-AACCT-ACCAGGCCTATAAACTT  239

seq1  TTCTCTGAAAACCTACTTCTGGATATTAATAATTTTCTGTTATTCATATT  295
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TTCTCTGAAAACCTACTTCTGGATATTAATAATTTTCTGTTA-TCATA-T  287

seq1  AATAATATGTGTTGAAATTTATTTCAATAATTTATGTGTGATAGGTATGT  345
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AATAATATGTG-TGAAATTTATTTCAATAATTTATGTGTGATAGGTATGT  336

seq1  GTGTATGTGTGTGTATACTCACCTATACATTAAAATCTCAGTATCTGTTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTGTGTGTATACTCACCTATACATTAAAATCTCAGTATCTGTTC  386

seq1  TAGAGTACATACAATACACACACACAGAGTGGGAGGGGGGACAGACACAC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTACATACAATACACACACACAGAGTGGGAGGGGGGACAGACACAC  436

seq1  GTATAGATAAAAAAAAACTTCTTGCATTCTTAAGTCCTTTATGTCAAATG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATAAAAAAAAACTTCTTGCATTCTTAAGTCCTTTATGTCAAATG  486

seq1  GCATGATGTCTGCATGCCACCTACACAGCCTTCCTGGGTACATGACACAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGATGTCTGCATGCCACCTACACAGCCTTCCTGGGTACATGACACAA  536

seq1  TCTCCATAATACCTAACACAGTATAGATGAAATGCAGCAAACCATGGCTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATAATACCTAACACAGTATAGATGAAATGCAGCAAACCATGGCTA  586

seq1  CCCTTATTGTTCCAGGAATCCTGACAAATGTACAGCTCACTACAAATACT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATTGTTCCAGGAATCCTGACAAATGTACAGCTCACTACAAATACT  636

seq1  TTTCTAAATCCAAATACTTCTGCCCTGCAGTTTTTGAATCAGTGGTTGCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAATCCAAATACTTCTGCCCTGCAGTTTTTGAATCAGTGGTTGCA  686

seq1  GAAGTCATGGGGATGGGGGATTTCATGTGTGAGTGTGTGCAAACGATTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATGGGGATGGGGGATTTCATGTGTGAGTGTGTGCAAACGATTAG  736

seq1  TTTTCAAAGGATTAAAAATGAACCTCTAATAAAGATCTTAAGAGTGCTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAAAGGATTAAAAATGAACCTCTAATAAAGATCTTAAGAGTGCTGA  786

seq1  GTTTATCAAAATTCCACGGTCACTTAGTCCTTGGTAAAATGAAGCTTTCA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATCAAAATTCCACGGTCACTTAGTCCTTGGTAAAATGAAGCTTTCA  836

seq1  GAGGAGAAGGATAAGCTAAACATCGATCCTGCTCTGTGGGGAAAGGGCGG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGGATAAGCTAAACATCGATCCTGCTCTGTGGGGAAAGGGCGG  886

seq1  GAGCGAGGACTTCATAACAGCCGCAATTTGGTAATTGTGGGGAGTTGTTG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCGAGGACTTCATAACAGCCGCAATTTGGTAATTGTGGGGAGTTGTTG  936

seq1  GGAAGGATTTGTTGTCACTTCTTCATCTACACTGGAGCTTAAACGTTTAC  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATTTGTTGTCACTTCTTCATCTACACTGGAGCTTAAACGTTTAC  986

seq1  TGTATTTTGAGTGTTTGTCGTGCCAGACTTTGCTTTTTAACTCTAGATTC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTTGAGTGTTTGTCGTGCCAGACTTTGCTTTTTAACTCTAGATTC  1036

seq1  TATCATAGGACAAAGAACTTGCGACTGTGGCTACCGGCAGTACAAATGGT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATAGGACAAAGAACTTGCGACTGTGGCTACCGGCAGTACAAATGGT  1086

seq1  TTGTCTTCGACCATGACCTCGTTTTGCCAGAGTACATCGTTGAATTTGAG  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTTCGACCATGACCTCGTTTTGCCAGAGTACATCGTTGAATTTGAG  1136

seq1  TACACTACAGTGGTATGCATTTTTTTTGTTTACAATTTTTAAAAATATGA  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTACAGTGGTATGCATTTTTTTTGTTTACAATTTTTAAAAATATGA  1186

seq1  ATTC  1199
      ||||
seq2  ATTC  1190

seq1: chr12_73410610_73411597
seq2: B6Ng01-050G15.g_66_1054

seq1  GAATTCCATCTTCAGGAGCCAGACAGTGAAAGAAGAGAACAACCTCCCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCTTCAGGAGCCAGACAGTGAAAGAAGAGAACAACCTCCCAC  50

seq1  AAGTTGTCCTCTGAGGTCCACAACAATGTATAACTTCCAACGCAATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCTCTGAGGTCCACAACAATGTATAACTTCCAACGCAATAAAA  100

seq1  TTGAACTGTTTATTATTAATTATTATTACTACTATTATTAGCATTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACTGTTTATTATTAATTATTATTACTACTATTATTAGCATTATTAT  150

seq1  TGGCACTAGCATTATTACTATTATTATCTAGAGGACGGGGGGGAAAGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTAGCATTATTACTATTATTATCTAGAGGACGGGGGGGAAAGTTT  200

seq1  CTACATCTTGCTGCAAAACACTGCAAATAGAATCAAACAGAGGTCAATAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATCTTGCTGCAAAACACTGCAAATAGAATCAAACAGAGGTCAATAA  250

seq1  AGACTTACTATATGCCAGGCAATGGTTTGCTGACCTGATTCTTTCTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTACTATATGCCAGGCAATGGTTTGCTGACCTGATTCTTTCTTACA  300

seq1  ACAGTTTTATATATTAAATCTCAGAGTCTCAATGTCTACACATAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTATATATTAAATCTCAGAGTCTCAATGTCTACACATAAATAAA  350

seq1  CTACACACCTGTGTAAACACACACACACATACATACATACATACATACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACCTGTGTAAACACACACACACATACATACATACATACATACAC  400

seq1  ACACACACACACACACACACACACACACACAGCATGTACAGTATGAAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACAGCATGTACAGTATGAAAAT  450

seq1  CCTGGACACACTGAAAGAATATACCAGACAAAGGTGCCATCTTCTGTGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGACACACTGAAAGAATATACCAGACAAAGGTGCCATCTTCTGTGAA  500

seq1  AGTGGTCATTTGGGAATACCTGTAAAATACCTATACCTAGCATGAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTCATTTGGGAATACCTGTAAAATACCTATACCTAGCATGAAAACT  550

seq1  AAGTCAGAAACAATCAATGTTTCACATGGTGAATGTCTGGCCTGAGCAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGAAACAATCAATGTTTCACATGGTGAATGTCTGGCCTGAGCAAC  600

seq1  AGACAAGATTGACGCTAGCAAACTTCCTCAATAGTGGGGCGGGCGGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGATTGACGCTAGCAAACTTCCTCAATAGTGGGGCGGGCGGGAGC  650

seq1  GAGCTGATGGAGTTAGGGCCTGAAGCACTTCCCTAAGAAGTGTGCCAGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGGAGTTAGGGCCTGAAGCACTTCCCTAAGAAGTGTGCCAGCC  700

seq1  GCTTTCAAGTGCCCACGTCCCAAAAGCTACTCTTAGTTAAAGCATACAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCAAGTGCCCACGTCCCAAAAGCTACTCTTAGTTAAAGCATACAAT  750

seq1  GTTCCAGACACTACAGCACACCCTCTGGTTGTAGAAAGAACAATGCAAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAGACACTACAGCACACCCTCTGGTTGTAGAAAGAACAATGCAAAG  800

seq1  ACCAACACAGGAAGCACAACATCACAGAGGTTCTGCTCTCACTAGATGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACAGGAAGCACAACATCACAGAGGTTCTGCTCTCACTAGATGAC  850

seq1  ACCAACCTGGGTAGACAGGGAAGGTCAAGAAAGGAAGTGTGGAGGCAGAC  900
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  ACCAACCTGGGTAGACAGGGAAAGTCAAGAAAGGAAGTGTGGAGGCAGAC  900

seq1  CCTGACCCGTCCACTGGTGAGGGGCTGCAAGGAGAGGCACACTATGCAAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCCGTCCACTGGTGAGGGGCTGCAAGGAGAGGCACACTATGCAAC  950

seq1  ATCTCATTTCAAATTTGCATTTTACCA-GGTCCTCTCTG  988
      ||||||||||||||||||||||||||| |||||||||||
seq2  ATCTCATTTCAAATTTGCATTTTACCAGGGTCCTCTCTG  989