BAC Information

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BAC

Clone NameB6Ng01-051D21
Chromosome12 (Build37)
Map Location 34,129,647 - 34,266,251
singlet/doubletdoublet
Overlap geneLOC668801
Upstream geneLOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4, Atxn7l1, 4930504H06Rik, Twistnb
Downstream geneLOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051D21.bB6Ng01-051D21.g
ACCDH874944DH874945
length1,196819
definitionDH874944|Mus musculus domesticus DNA, BAC clone: B6Ng01-051D21, 5' end.DH874945|Mus musculus domesticus DNA, BAC clone: B6Ng01-051D21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,265,032 - 34,266,251)(34,129,647 - 34,130,241)
sequence
gaattcctttccaaatgaatagtgcggagagttggttaagcttgaaaaca
ttgaaaattttataatgttttgttttaaagagccacaagggtaatagctc
catgttaaccctttcgtacaaatcctagcaatttggaaatgaaatgcatg
catataaaatatcatgttctacatagataattattaagatgccaggccaa
ttgctgttacaaatacagtaggagtggtggggcaggcctcctctctcccc
tcatctcctcacacacacacacacattcactcttcatcctcccttaccac
cagtgaccacccaggcacagtcacacttacctatgggtaattcagtaaca
gcacacatcaagctgtctgggtcagaccctgtgtgagctcattacttgct
gctcgcatacattacattttgaaagtactctttggatttgactcaagaat
gatctcatccacacttaacactcaggccacagcacaaacgggcaggtgag
tgaaggatcacactgaaacatgaaccaaaaagagatcaattgggatgaaa
agcaggaaggggcttcagaatcaatcagtggccataattagcttcccaat
ataacagcctgggtgaggcttccttgtacttctgaagcctggccaatgga
gaggagcatatatcactgcacaggattttctttcctagattgttaacaag
gacagcattgggaagagacgagcatcacaacaaaatagggaggaagagaa
tcctgaaggagaacgcctcctgctgcctgtaagcagaaaggaaatgagaa
catgaaacaggctaaccatctggggcagctgccttgccaaggacaggagg
aaagttctctccagcccactgagatcaaggctctccttccaagtctattt
accttgcaagatacttaactagaggaactcacccacagagaaacagcatt
tgggggcatcttctgaaaaaaaattcttcctcagagctgcagatgtaaat
gtttagctaatatttacccaatgaagaaaccattcactctctattggaag
cagcttctgaaagactaagtgttatgaactgatctttacctctttttgaa
ttcctatgaatggaccttacgttttgacttaggaaataggtaattactgc
tggaattggataatgaacaatggaatggtcagtccgatgtctttta
gaattctttgttcagttctgagccccatcttttaagggggctatttgatt
ttctggagtccaccctcttgagttctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattaacggtgtcttttgccttgcagaagctttgcagtttca
tgaggtccctaatggattttcatttgttgaaccatcccttcatctctcat
atgacccctacttgatcatggtggatgatgtttttgttgtattttttttg
tgagtattctgttgaatatttttgcatcaatgttcataagggaacttgat
cagaaattctcttttgttgctgagtctggttggtttaggtatcattctat
gtagcctcatagaatgaatttggcagtgttccttctgtttttattttgtg
gagtagtttgagaaatattggtattagctctttgaatgtctggtagaatt
ccacactaaaactatgtggactttttaaaaaattttttttgttgggagag
ttttgactactgctactatttctttagggattatagtgctatttagatag
tttacctgatcttgactttaactttggtaagtggtatctatcaaaaaaat
catccacttcatggatatttttcaattttgaggagtacagttttttgaag
taagacctatttttttttttttttttggcctccatgaatctgggttttgc
agttattatagccttagatgccaatttctgaagttaatctttttggatgg
gtgtttttgaaattgtccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34265032_34266251
seq2: B6Ng01-051D21.b_41_1236 (reverse)

seq1  TAAAAGACATCAGAACCTGACCATCTCATTTGTCATTTTATCCCCAATTC  50
      ||||||||||| ||  ||||||||  ||||  ||||| |    |||||  
seq2  TAAAAGACATCGGA--CTGACCATTCCATTGTTCATTAT----CCAAT--  42

seq1  TCAAGCAGTTAATAACTATTTCCTAAAAGTCATAAAAACGTAA-GTTCAT  99
      || |||||| | || |||||||||  |||||   ||||||||| || |||
seq2  TCCAGCAGTAATTACCTATTTCCT--AAGTC---AAAACGTAAGGTCCAT  87

seq1  TCATAAGAATCATAAAAGAGTTAAAAGATTCCAG-TCATAACAACTTAGT  148
      ||||| ||||   ||||||| | ||||||  ||| ||||||| |||||||
seq2  TCATAGGAATTCAAAAAGAGGT-AAAGAT--CAGTTCATAAC-ACTTAGT  133

seq1  CTTTCAGAAGCTGC-TCTCATAGAGAAGTGAATTGTTTCTTCCATTGGGT  197
      |||||||||||||| ||  |||||| ||||||| ||||||| ||||||| 
seq2  CTTTCAGAAGCTGCTTCCAATAGAG-AGTGAATGGTTTCTT-CATTGGG-  180

seq1  TAAATATTTTAGCTAAACATTTACATCTGCAGCCTCTGAGGAAGAATTTT  247
      ||||||  |||||||||||||||||||||||| ||||||||||||| |||
seq2  TAAATA--TTAGCTAAACATTTACATCTGCAG-CTCTGAGGAAGAA-TTT  226

seq1  TTTTTCAGAAGATGCCCCCAAATGCTGTTTCTCCTGTTGGTTGAGTTCCT  297
      |||||||||||||||||||||||||||||||| ||| ||| |||||||||
seq2  TTTTTCAGAAGATGCCCCCAAATGCTGTTTCT-CTG-TGGGTGAGTTCCT  274

seq1  CTAGTTAAGTATCTTGCAAGGTAAATAGACCTTGGAAGGAGAGCCTTGAT  347
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CTAGTTAAGTATCTTGCAAGGTAAATAGA-CTTGGAAGGAGAGCCTTGAT  323

seq1  CTCAGTGGGCTGGAGAGAACTTTCCTCCTGTCCTTGGCAAGGCAGCTGCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGGGCTGGAGAGAACTTTCCTCCTGTCCTTGGCAAGGCAGCTGCC  373

seq1  CCAGATGGTTAGCCTGTTTCATGTTCTCATTTCCTTTCTGCTTACAGGCA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGGTTAGCCTGTTTCATGTTCTCATTTCCTTTCTGCTTACAGGCA  423

seq1  GCAGGAGGCGTTCTCCTTCAGGATTCTCTTCCTCCCTATTTTGTTGTGAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGGCGTTCTCCTTCAGGATTCTCTTCCTCCCTATTTTGTTGTGAT  473

seq1  GCTCGTCTCTTCCCAATGCTGTCCTTGTTAACAATCTAGGAAAGAAAATC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCGTCTCTTCCCAATGCTGTCCTTGTTAACAATCTAGGAAAGAAAATC  523

seq1  CTGTGCAGTGATATATGCTCCTCTCCATTGGCCAGGCTTCAGAAGTACAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGCAGTGATATATGCTCCTCTCCATTGGCCAGGCTTCAGAAGTACAA  573

seq1  GGAAGCCTCACCCAGGCTGTTATATTGGGAAGCTAATTATGGCCACTGAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCCTCACCCAGGCTGTTATATTGGGAAGCTAATTATGGCCACTGAT  623

seq1  TGATTCTGAAGCCCCTTCCTGCTTTTCATCCCAATTGATCTCTTTTTGGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCTGAAGCCCCTTCCTGCTTTTCATCCCAATTGATCTCTTTTTGGT  673

seq1  TCATGTTTCAGTGTGATCCTTCACTCACCTGCCCGTTTGTGCTGTGGCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTTCAGTGTGATCCTTCACTCACCTGCCCGTTTGTGCTGTGGCCT  723

seq1  GAGTGTTAAGTGTGGATGAGATCATTCTTGAGTCAAATCCAAAGAGTACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTAAGTGTGGATGAGATCATTCTTGAGTCAAATCCAAAGAGTACT  773

seq1  TTCAAAATGTAATGTATGCGAGCAGCAAGTAATGAGCTCACACAGGGTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAATGTAATGTATGCGAGCAGCAAGTAATGAGCTCACACAGGGTCT  823

seq1  GACCCAGACAGCTTGATGTGTGCTGTTACTGAATTACCCATAGGTAAGTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGACAGCTTGATGTGTGCTGTTACTGAATTACCCATAGGTAAGTG  873

seq1  TGACTGTGCCTGGGTGGTCACTGGTGGTAAGGGAGGATGAAGAGTGAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTGCCTGGGTGGTCACTGGTGGTAAGGGAGGATGAAGAGTGAATG  923

seq1  TGTGTGTGTGTGTGAGGAGATGAGGGGAGAGAGGAGGCCTGCCCCACCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGAGGAGATGAGGGGAGAGAGGAGGCCTGCCCCACCAC  973

seq1  TCCTACTGTATTTGTAACAGCAATTGGCCTGGCATCTTAATAATTATCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTGTATTTGTAACAGCAATTGGCCTGGCATCTTAATAATTATCTA  1023

seq1  TGTAGAACATGATATTTTATATGCATGCATTTCATTTCCAAATTGCTAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAACATGATATTTTATATGCATGCATTTCATTTCCAAATTGCTAGG  1073

seq1  ATTTGTACGAAAGGGTTAACATGGAGCTATTACCCTTGTGGCTCTTTAAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTACGAAAGGGTTAACATGGAGCTATTACCCTTGTGGCTCTTTAAA  1123

seq1  ACAAAACATTATAAAATTTTCAATGTTTTCAAGCTTAACCAACTCTCCGC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACATTATAAAATTTTCAATGTTTTCAAGCTTAACCAACTCTCCGC  1173

seq1  ACTATTCATTTGGAAAGGAATTC  1220
      |||||||||||||||||||||||
seq2  ACTATTCATTTGGAAAGGAATTC  1196

seq1: chr12_34129647_34130241
seq2: B6Ng01-051D21.g_290_886

seq1  TTTGTTGAACCATCCCTTCATCTCTCATATGACCCCTACTTGATCATGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTGAACCATCCCTTCATCTCTCATATGACCCCTACTTGATCATGGT  50

seq1  GGATGATGTTTTTGTTGTATTTTTTTTGTGAGTATTCTGTTGAATATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATGTTTTTGTTGTATTTTTTTTGTGAGTATTCTGTTGAATATTTT  100

seq1  TGCATCAATGTTCATAAGGGAACTTGATCAGAAATTCTCTTTTGTTGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCAATGTTCATAAGGGAACTTGATCAGAAATTCTCTTTTGTTGCTG  150

seq1  AGTCTGGTTGGTTTAGGTATCATTCTATGTAGCCTCATAGAATGAATTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGGTTGGTTTAGGTATCATTCTATGTAGCCTCATAGAATGAATTTG  200

seq1  GCAGTGTTCCTTCTGTTTTTATTTTGTGGAGTAGTTTGAGAAATATTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTTCCTTCTGTTTTTATTTTGTGGAGTAGTTTGAGAAATATTGGT  250

seq1  ATTAGCTCTTTGAATGTCTGGTAGAATTCCACACTAAAACTATGTGGACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTCTTTGAATGTCTGGTAGAATTCCACACTAAAACTATGTGGACT  300

seq1  TTTTAAAAAATTTTTTTTGTTGGGAGAGTTTTGACTACTGCTACTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAAATTTTTTTTGTTGGGAGAGTTTTGACTACTGCTACTATTTC  350

seq1  TTTAGGGATTATAGTGCTATTTAGATAGTTTACCTGATCTTGAC-TTAAC  399
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TTTAGGGATTATAGTGCTATTTAGATAGTTTACCTGATCTTGACTTTAAC  400

seq1  TTTGGTAAGTGGTATCTATCAAAAAAATCATCCACTTCATGGATATTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTAAGTGGTATCTATCAAAAAAATCATCCACTTCATGGATATTTTT  450

seq1  CAATTTTGAGGAGTACAGTTTTTTGAAGTAAGACCTATTTTTTTTTTTTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTGAGGAGTACAGTTTTTTGAAGTAAGACCTATTTTTTTTTTTTT  500

seq1  TTTTGGCCTCCATGAATCTGGGTTTTGCAGTTATTATAG-CTTAGATGCC  548
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTTTGGCCTCCATGAATCTGGGTTTTGCAGTTATTATAGCCTTAGATGCC  550

seq1  AATTTCTG-AGTTAATCTTTGTTGGATGGGTGTTTTTGAAAATGTCCC  595
      |||||||| ||||||||||| |||||||||||||||||||| ||||||
seq2  AATTTCTGAAGTTAATCTTT-TTGGATGGGTGTTTTTGAAATTGTCCC  597