BAC Information

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BAC

Clone NameB6Ng01-051I04
Chromosome12 (Build37)10 (Build37)
Map Location 91,971,622 - 91,971,973104,054,058 - 104,054,363
singlet/doubletsingletsinglet
Overlap geneDio2
Upstream geneNrxn3, LOC100039498, LOC100039287
Downstream geneLOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051I04.bB6Ng01-051I04.g
ACCDH875127DH875128
length352366
definitionDH875127|Mus musculus domesticus DNA, BAC clone: B6Ng01-051I04, 5' end.DH875128|Mus musculus domesticus DNA, BAC clone: B6Ng01-051I04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(91,971,622 - 91,971,973)(104,054,058 - 104,054,363)
sequence
taatctaatggaaatttcattttcgtagcgattggccagagaatggtgaa
gaacagaaatgggttttaaacgtttttttctttttaagattgtctattta
tttttaaattttagccaacttatcacttatcaggttttagaaaagatagt
ggatttatgattagttttatgaagcttataaagtttgactgctggtttac
taactcttgggcttacacatcataggtgtgagtccctctctgtctgtctc
tgtctgtctgtctgtctgtctgtctgtctgtctgtctgtgtttgtgtttg
tgtttgtctgtctctctatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tg
gaattctctcctgaggaataccgaatggcagagacacctgaaaaaatgtt
caacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagattc
catctcacaccagtcagaatggataagatcaaaaattcaggtgacagcag
atgctggcgaggatgtggagaaagaagaacactcctccattgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggtggttcctcaga
aaattggacaaagtactaccagaggatcccgaaatacctctcctgggcat
atatatatatatatatatatatatatatatatatatatatatatatatat
atatatatatatatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_91971622_91971973
seq2: B6Ng01-051I04.b_52_403 (reverse)

seq1  CACACACACACACACACACACACACACACACAGATAGAGAGACAGACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACAGATAGAGAGACAGACAAA  50

seq1  CACAAACACAAACACAGACAGACAGACAGACAGACAGACAGACAGACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAACACAAACACAGACAGACAGACAGACAGACAGACAGACAGACAGA  100

seq1  CAGAGACAGACAGAGAGGGACTCACACCTATGATGTGTAAGCCCAAGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACAGACAGAGAGGGACTCACACCTATGATGTGTAAGCCCAAGAGT  150

seq1  TAGTAAACCAGCAGTCAAACTTTATAAGCTTCATAAAACTAATCATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAACCAGCAGTCAAACTTTATAAGCTTCATAAAACTAATCATAAAT  200

seq1  CCACTATCTTTTCTAAAACCTGATAAGTGATAAGTTGGCTAAAATTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTATCTTTTCTAAAACCTGATAAGTGATAAGTTGGCTAAAATTTAAA  250

seq1  AATAAATAGACAATCTTAAAAAGAAAAAAACGTTTAAAACCCATTTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAGACAATCTTAAAAAGAAAAAAACGTTTAAAACCCATTTCTGT  300

seq1  TCTTCACCATTCTCTGGCCAATCGCTACGAAAATGAAATTTCCATTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACCATTCTCTGGCCAATCGCTACGAAAATGAAATTTCCATTAGAT  350

seq1  TA  352
      ||
seq2  TA  352

seq1: chr10_104054058_104054363
seq2: B6Ng01-051I04.g_65_368 (reverse)

seq1  ATATATGCCCAGAAGAGGTATTGCTGGATCCTCCGGTAGTACTATGTCCA  50
      |||||||||||| ||||||||| | |||||||| ||||||||| ||||||
seq2  ATATATGCCCAGGAGAGGTATTTCGGGATCCTCTGGTAGTACTTTGTCCA  50

seq1  ATTTTCTGACGAACCGCCAGACGGATTTCCAGAGTGGTTGTACAAGCCTG  100
      ||||||||| ||||| |||||| |||||||||||||||||||||||| ||
seq2  ATTTTCTGAGGAACCACCAGACTGATTTCCAGAGTGGTTGTACAAGCTTG  100

seq1  CAATCCCACCAACAATGGAGGAGTGTTCCTCTTTCTCCACATCCTCGCCA  150
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  CAATCCCACCAACAATGGAGGAGTGTTCTTCTTTCTCCACATCCTCGCCA  150

seq1  GCATCTGCTGTCACCTGAATTTTTGATCTTAGCCATTCTGACTGGTGTGA  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GCATCTGCTGTCACCTGAATTTTTGATCTTATCCATTCTGACTGGTGTGA  200

seq1  GGTGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGAT  250
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAATCTCAGGGTTGTTTTGATTTGCATTTCCCTGATGATTAAGGAT  250

seq1  GTTGAACATTTTTTCAGGTGCTTCTCTGCCATTCGGTATTCCTCAGGTGA  300
      ||||||||||||||||||||  ||||||||||||||||||||||||| ||
seq2  GTTGAACATTTTTTCAGGTG--TCTCTGCCATTCGGTATTCCTCAGGAGA  298

seq1  GAATTC  306
      ||||||
seq2  GAATTC  304