BAC Information

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BAC

Clone NameB6Ng01-051I24
Chromosome12 (Build37)
Map Location 34,978,489 - 35,085,501
singlet/doubletdoublet
Overlap geneHdac9
Upstream geneAtxn7l1, 4930504H06Rik, Twistnb, LOC668801, LOC668806, Ferd3l, Twist1
Downstream gene4921508M14Rik, Prps1l1, Snx13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-051I24.bB6Ng01-051I24.g
ACCDH875165DH875166
length1,071608
definitionDH875165|Mus musculus domesticus DNA, BAC clone: B6Ng01-051I24, 5' end.DH875166|Mus musculus domesticus DNA, BAC clone: B6Ng01-051I24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,084,427 - 35,085,501)(34,978,489 - 34,979,096)
sequence
gaattcaaatgtctgtctgggcatctttagcaaaggagtgaagacaacat
gtgggatttgattacagttcaggcgggaggacaaagagtgtggtttgaga
gttgctaagtttctaaatgtatccattcactgctcagctaataattaata
ataataataataagccaggaagaagtgttggcgaaaacaaaatggcaaaa
tggaaggttattactcttctggctctttgtgacctattaaatttttgaga
ttgtctaattttaaacatgtatgtgtatatatgtgtgtatagctgtatac
atgcacagctacagccaaaatggagagtataaatcaagacatcttactta
ttttattttggaaccttttattcatacaagctagacttggctctctttac
ttttcagctagctgttacacattctttgtcactcactgcaaatctctcct
tccacccccaccagtcaaaaaagacaaacaaaacaaaacagaaggaaatg
tgatttactggagtttaaagggtagggggatttctccaggtcagtggcag
gacatccacttccaatgcatacaaggccagttcaaaagcaagcagtgact
ttcctcataatgaattaattgtgtgcctaaactgtggtccaaaaggccag
gtgggcagacctttctgcaccgatgggtagcctttctatggcccagaacc
aaaaatacagccctgatggctaacacgtgttttctgctgtattacactca
cagagctctgtcctgtgatttagtctgcataggtaggaggcagtagaagt
cacgcagactgtcagtaaattagcatcctagctgtgacacattaccacct
aaagaaagtggacagagccaagagtgcaaccactaagaatttgccatgtg
atttatttttacagataccatgtagatggatcatagaatgtgatttcata
gcagcagcaaaatacagtattgatgctaaaaccctcagttatatattcgc
catttatggcatatccagctttggtaaaataccacaagtaggttttcatc
ttaaaggaataaccggtatca
gaattccagccctcactctcccatgtcatgacaatagttacccatgagac
atctccacaggcttttgcttcctcaggtacaaaaatacaggtgtgagcag
actattttgaagtttgcactcagccttaaatgataagattttgggcaaaa
ctaataaagcttatgtatataaaacttaaaaacacatttcactgttgttt
atgaatttgctttagggaagaaaatgcaacttcaatgattgttacggttt
ttgaggcaagagaagagactcgggagtattttcaacagagtttcaagtga
agccaatgattataggtatgatcacaattaagaaaaaccataggttttct
tagctggtgaggtggtgcagtgggtaacagtacttgctctgaggcctgac
accctaggtcccacttgggagtcagagagaacagactcgctaagatcatc
ccagacctcctcacccctcagcacacaattctcgtaaataagtacatttt
aaagtgggtttttaaaaaagcatatgtattctgaaaagttaggacttcaa
ataacttttctcccagttttttcccaatggcagtggtgtttgtgtgtgtg
tgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35084427_35085501
seq2: B6Ng01-051I24.b_48_1118 (reverse)

seq1  TGATACCTG-TATTCCTTTAAGATGAAAACCTACTTGTGTAATTTTACCA  49
      ||||||| | |||||||||||||||||||||||||||||  |||||||||
seq2  TGATACCGGTTATTCCTTTAAGATGAAAACCTACTTGTGGTATTTTACCA  50

seq1  AAGCTGGATATGCCATAAATGGCGAATTATATAACTGAGGGTTTTAGCAT  99
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGCTGGATATGCCATAAATGGCGAA-TATATAACTGAGGGTTTTAGCAT  99

seq1  CAAATACTGTAATTTTGCTGCTGCTATGAAATCACATTCTATGATCCATC  149
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  C-AATACTGT-ATTTTGCTGCTGCTATGAAATCACATTCTATGATCCATC  147

seq1  TTACATGGTATCTGTAAAAATAAAATCACATGGCAAATTCTTAGTGGTTG  199
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -TACATGGTATCTGTAAAAAT-AAATCACATGGCAAATTCTTAGTGGTTG  195

seq1  CACTCTTGGCTCTGTCCACTTTCTTTAGGTGGTAATGTGTCACAGCTAGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGCTCTGTCCACTTTCTTTAGGTGGTAATGTGTCACAGCTAGG  245

seq1  ATGCTAATTTACTGACAGTCTGCCTGACTTCTACTGCCTCCTACCTATGC  299
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATGCTAATTTACTGACAGTCTGCGTGACTTCTACTGCCTCCTACCTATGC  295

seq1  AGACTAAATCACAGGACAGAGCTCTGTGAGTGTAATACAGCAGAAAACAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTAAATCACAGGACAGAGCTCTGTGAGTGTAATACAGCAGAAAACAC  345

seq1  GTGTTAGCCATCAGGGCTGTATTTTTGGTTCTGGGCCATAGAAAGGCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGCCATCAGGGCTGTATTTTTGGTTCTGGGCCATAGAAAGGCTAC  395

seq1  CCATCGGTGCAGAAAGGTCTGCCCACCTGGCCTTTTGGACCACAGTTTAG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGGTGCAGAAAGGTCTGCCCACCTGGCCTTTTGGACCACAGTTTAG  445

seq1  GCACACAATTAATTCATTATGAGGAAAGTCACTGCTTGCTTTTGAACTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACAATTAATTCATTATGAGGAAAGTCACTGCTTGCTTTTGAACTGG  495

seq1  CCTTGTATGCATTGGAAGTGGATGTCCTGCCACTGACCTGGAGAAATCCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTATGCATTGGAAGTGGATGTCCTGCCACTGACCTGGAGAAATCCC  545

seq1  CCTACCCTTTAAACTCCAGTAAATCACATTTCCTTCTGTTTTGTTTTGTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCCTTTAAACTCCAGTAAATCACATTTCCTTCTGTTTTGTTTTGTT  595

seq1  TGTCTTTTTTGACTGGTGGGGGTGGAAGGAGAGATTTGCAGTGAGTGACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTTTGACTGGTGGGGGTGGAAGGAGAGATTTGCAGTGAGTGACA  645

seq1  AAGAATGTGTAACAGCTAGCTGAAAAGTAAAGAGAGCCAAGTCTAGCTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGTGTAACAGCTAGCTGAAAAGTAAAGAGAGCCAAGTCTAGCTTG  695

seq1  TATGAATAAAAGGTTCCAAAATAAAATAAGTAAGATGTCTTGATTTATAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAAAAGGTTCCAAAATAAAATAAGTAAGATGTCTTGATTTATAC  745

seq1  TCTCCATTTTGGCTGTAGCTGTGCATGTATACAGCTATACACACATATAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATTTTGGCTGTAGCTGTGCATGTATACAGCTATACACACATATAT  795

seq1  ACACATACATGTTTAAAATTAGACAATCTCAAAAATTTAATAGGTCACAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACATGTTTAAAATTAGACAATCTCAAAAATTTAATAGGTCACAA  845

seq1  AGAGCCAGAAGAGTAATAACCTTCCATTTTGCCATTTTGTTTTCGCCAAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAGAAGAGTAATAACCTTCCATTTTGCCATTTTGTTTTCGCCAAC  895

seq1  ACTTCTTCCTGGCTTATTATTATTATTATTAATTATTAGCTGAGCAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTTCCTGGCTTATTATTATTATTATTAATTATTAGCTGAGCAGTGA  945

seq1  ATGGATACATTTAGAAACTTAGCAACTCTCAAACCACACTCTTTGTCCTC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATACATTTAGAAACTTAGCAACTCTCAAACCACACTCTTTGTCCTC  995

seq1  CCGCCTGAACTGTAATCAAATCCCACATGTTGTCTTCACTCCTTTGCTAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCCTGAACTGTAATCAAATCCCACATGTTGTCTTCACTCCTTTGCTAA  1045

seq1  AGATGCCCAGACAGACATTTGAATTC  1075
      ||||||||||||||||||||||||||
seq2  AGATGCCCAGACAGACATTTGAATTC  1071

seq1: chr12_34978489_34979096
seq2: B6Ng01-051I24.g_69_676

seq1  GAATTCCAGCCCTCACTCTCCCATGTCATGACAATAGTTACCCATGAGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCTCACTCTCCCATGTCATGACAATAGTTACCCATGAGAC  50

seq1  ATCTCCACAGGCTTTTGCTTCCTCAGGTACAAAAATACAGGTGTGAGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCACAGGCTTTTGCTTCCTCAGGTACAAAAATACAGGTGTGAGCAG  100

seq1  ACTATTTTGAAGTTTGCACTCAGCCTTAAATGATAAGATTTTGGGCAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTTTGAAGTTTGCACTCAGCCTTAAATGATAAGATTTTGGGCAAAA  150

seq1  CTAATAAAGCTTATGTATATAAAACTTAAAAACACATTTCACTGTTGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAGCTTATGTATATAAAACTTAAAAACACATTTCACTGTTGTTT  200

seq1  ATGAATTTGCTTTAGGGAAGAAAATGCAACTTCAATGATTGTTACGGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATTTGCTTTAGGGAAGAAAATGCAACTTCAATGATTGTTACGGTTT  250

seq1  TTGAGGCAAGAGAAGAGACTCGGGAGTATTTTCAACAGAGTTTCAAGTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGCAAGAGAAGAGACTCGGGAGTATTTTCAACAGAGTTTCAAGTGA  300

seq1  AGCCAATGATTATAGGTATGATCACAATTAAGAAAAACCATAGGTTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATGATTATAGGTATGATCACAATTAAGAAAAACCATAGGTTTTCT  350

seq1  TAGCTGGTGAGGTGGTGCAGTGGGTAACAGTACTTGCTCTGAGGCCTGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGTGAGGTGGTGCAGTGGGTAACAGTACTTGCTCTGAGGCCTGAC  400

seq1  ACCCTAGGTCCCACTTGGGAGTCAGAGAGAACAGACTCGCTAAGATCATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGTCCCACTTGGGAGTCAGAGAGAACAGACTCGCTAAGATCATC  450

seq1  CCAGACCTCCTCACCCCTCAGCACACAATTCTCGTAAATAAGTACATTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTCCTCACCCCTCAGCACACAATTCTCGTAAATAAGTACATTTT  500

seq1  AAAGTGGGTTTTTAAAAAAGCATATGTATTCTGAAAAGTTAGGACTTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGGGTTTTTAAAAAAGCATATGTATTCTGAAAAGTTAGGACTTCAA  550

seq1  ATAACTTTTCTCCCAGTTTTTTCCCAATGGCAGTGGTGTTTGTGTGTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTTTCTCCCAGTTTTTTCCCAATGGCAGTGGTGTTTGTGTGTGTG  600

seq1  TGTGTGTG  608
      ||||||||
seq2  TGTGTGTG  608