BAC Information

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BAC

Clone NameB6Ng01-052D15
Chromosome12 (Build37)2 (Build37)
Map Location 81,448,058 - 81,448,31244,474,086 - 44,475,187
singlet/doubletsingletsinglet
Overlap geneWdr22
Upstream geneRad51l1, LOC100041968, LOC435309, LOC100041674, LOC666754, Zfp36l1, Actn1
Downstream geneExdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052D15.bB6Ng01-052D15.g
ACCDH875641DH875642
length5091,101
definitionDH875641|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D15, 5' end.DH875642|Mus musculus domesticus DNA, BAC clone: B6Ng01-052D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(81,448,058 - 81,448,312)(44,474,086 - 44,475,187)
sequence
aatgaaagtgaatgcacagcatactcaaacttataggacacaataaaaat
tatttcaagaggcaagttcgtatcacaaagtgcttgcaatgaaaaattgg
gagagatcctgtactactagcaacttaatagtacgtgtgaaagctccaat
acaaagagaagaaagcacccacagtagaggccagcaatagtcaaactcag
ggctaaaatcaaagaaatagaaacaaagaaaacaatacaaaaaaaaaaaa
aatcaatgaaacagagagttggttctttgagaaaatcaataagattgaca
gaccctcatacaaattaacttaaaagggggagagagaatatccaaattaa
taaaatcataattagaaagggagataaaacaacagactctgaggaaatcc
aaagaatcatatggagaactttgtttgcctccctcccatgaatcccctca
ggcccttagactgtccccattcctaagtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtg
gaattctcacctcaggttaattgttaagttgggccactcagtgaactgac
acaagctaggaaacttacagaggactgctccatggagctgtgacttccat
ccttatggcattgctgccatggattctgttccttccatcctgctgttcac
atgcatggacacaatgagcaggtcttaacatgttgatatttgaaagactg
tgaggaatgggagggagagccagtccttgtgacataagcctataatccta
gctaatcaatgagctaagaagaatggagggcactagaaaagatcatattg
aatgaggtaacccagacccagaaagacaaatatcacacattctctgccat
tagaggctctgagccccagtcctacagtgactatgtatcctggagtgtat
cctggagtcctatagtgactatgtatcctggagtcactgtaaaatccaga
aaggaaacaaggtccattgctgggataggaggtcagggcacaatacagag
aagaatagcaagatagaagtgatctgatcaaggaaatgggaaaacaatag
gccctaattaggaaggaaaagggagacagatacagaaaaaggatgagtta
aagtaatagtaagaaataaaaacttcaacaactattactaactacctttt
aaaaacattctgtgtataaatatacaaatataatttaaattaaatttcct
catctgaattgtccatgctgcctctaggagtcaaagacgacccaacaaaa
acactaacactaaatatgagaagcgctgttttgatttgttgaaccaggat
tgtccaaaaaacactaaaaaacctacaagtgattactattgcccctggtt
accctccaacatggaacatacattcttatgaacatgccatacactttcag
acaccaggcccaggaccctgagctgaatcttacctgaaagccttcctaag
aactagcagtcatggtacgagaaggtgctattgaagctttcaagaaagga
aacagctagcagtctttgtccaattactaagccttacaaaccacaacagc
agcactcagcatggcaccataactctaagggatcagtaatgacatgctgc
c
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_81448058_81448312
seq2: B6Ng01-052D15.b_290_561 (reverse)

seq1  ----------CACACACACACACACACACAAATGTATCAGATGCATACAT  40
                |||||||||||||||||||| |  ||  | |||   ||| 
seq2  CACACACACACACACACACACACACACACACACTTAGGA-ATGGGGACAG  49

seq1  ACTGATTGACCT---GGGATT--------------------TTTTTTCAA  67
       || |  | |||   ||||||                      || || |
seq2  TCT-AAGGGCCTGAGGGGATTCATGGGAGGGAGGCAAACAAAGTTCTCCA  98

seq1  TATTTTTTATTAGGTATTTTCCTCA-----------TTTA----CAGTTC  102
      |||  ||  || |    ||||||||           ||||    |  |||
seq2  TATGATTCTTTGG---ATTTCCTCAGAGTCTGTTGTTTTATCTCCCTTTC  145

seq1  CAATGCT-ATCCCA-AAAGTCCCTCATACCCTCCCCCCAACCCCCGGCTT  150
       |||  | ||   |  || |     || | ||| ||||            
seq2  TAATTATGATTTTATTAATTTGGATATTCTCTCTCCCC------------  183

seq1  GGGATCTTAAAACATAACAAATAAAAG---CTACCTATCTTTCTATGGAA  197
           |||  ||  |||    ||  ||   ||  | ||||   ||| || 
seq2  -----CTTTTAAGTTAATTTGTATGAGGGTCTGTCAATCT---TATTGAT  225

seq1  TTATGTACACA--CATGTGTATATGTAAATACACACACACACACACTTTT  245
      ||    | | |  ||  | | | | |             ||   | ||||
seq2  TTTCTCAAAGAACCAACTCTCTGTTT-------------CATTGATTTTT  262

seq1  TTTTTTTTTG  255
      ||||||||||
seq2  TTTTTTTTTG  272

seq1: chr2_44474086_44475187
seq2: B6Ng01-052D15.g_67_1167 (reverse)

seq1  GGCAGGCATGTCATTACTGATCCCTTAGAGTTATGGTGCCATGCTGAGTG  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCA-GCATGTCATTACTGATCCCTTAGAGTTATGGTGCCATGCTGAGTG  49

seq1  CTGCTGTTGTGGTTTGTTAGGCTTAGTAGTTGGAC-AAGACTGCTAGCTG  99
      ||||||||||||||||| |||||||||| |||||| ||||||||||||||
seq2  CTGCTGTTGTGGTTTGTAAGGCTTAGTAATTGGACAAAGACTGCTAGCTG  99

seq1  TTTCCTTTCTTTGAAAGCTTCAATAGCACCTTCTCGTACCATGACTGCTA  149
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTC-TTGAAAGCTTCAATAGCACCTTCTCGTACCATGACTGCTA  148

seq1  GTTCTTAGGGAGGCTTTCAGGTAAGATTCAGCTCAGGGTCCTGGGCCTGG  199
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTAGGAAGGCTTTCAGGTAAGATTCAGCTCAGGGTCCTGGGCCTGG  198

seq1  TGTCTG-AAGTGTATGGCATGTTCATTAGGAATGTATGTTCCATGTTGGA  248
      |||||| |||||||||||||||||| || |||||||||||||||||||||
seq2  TGTCTGAAAGTGTATGGCATGTTCA-TAAGAATGTATGTTCCATGTTGGA  247

seq1  GGGTAACCAGGGGCAATAGTAATCACTTGTAGGTTTTTTAGTGTTTTTTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAACCAGGGGCAATAGTAATCACTTGTAGGTTTTTTAGTGTTTTTTG  297

seq1  GACAATCCTGGTTCAACAAATCAAAACAGCGCTTCTCATATTTAGTGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCCTGGTTCAACAAATCAAAACAGCGCTTCTCATATTTAGTGTTA  347

seq1  GTGTTTTTGTTGGGTCGTCTTTGACTCCTAGAGGCAGCATGGACAATTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTTGTTGGGTCGTCTTTGACTCCTAGAGGCAGCATGGACAATTCA  397

seq1  GATGAGGAAATTTAATTTAAATTATATTTGTATATTTATACACAGAATGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGAAATTTAATTTAAATTATATTTGTATATTTATACACAGAATGT  447

seq1  TTTTAAAAGGTAGTTAGTAATAGTTGTTGAAGTTTTTATTTCTTACTATT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAGGTAGTTAGTAATAGTTGTTGAAGTTTTTATTTCTTACTATT  497

seq1  ACTTTAACTCATCCTTTTTCTGTATCTGTCTCCCTTTTCCTTCCTAATTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAACTCATCCTTTTTCTGTATCTGTCTCCCTTTTCCTTCCTAATTA  547

seq1  GGGCCTATTGTTTTCCCATTTCCTTGATCAGATCACTTCTATCTTGCTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTATTGTTTTCCCATTTCCTTGATCAGATCACTTCTATCTTGCTAT  597

seq1  TCTTCTCTGTATTGTGCCCTGACCTCCTATCCCAGCAATGGACCTTGTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCTGTATTGTGCCCTGACCTCCTATCCCAGCAATGGACCTTGTTT  647

seq1  CCTTTCTGGATTTTACAGTGACTCCAGGATACATAGTCACTATAGGACTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGGATTTTACAGTGACTCCAGGATACATAGTCACTATAGGACTC  697

seq1  CAGGATACACTCCAGGATACATAGTCACTGTAGGACTGGGGCTCAGAGCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATACACTCCAGGATACATAGTCACTGTAGGACTGGGGCTCAGAGCC  747

seq1  TCTAATGGCAGAGAATGTGTGATATTTGTCTTTCTGGGTCTGGGTTACCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGGCAGAGAATGTGTGATATTTGTCTTTCTGGGTCTGGGTTACCT  797

seq1  CATTCAATATGATCTTTTCTAGTGCCCTCCATTCTTCTTAGCTCATTGAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAATATGATCTTTTCTAGTGCCCTCCATTCTTCTTAGCTCATTGAT  847

seq1  TAGCTAGGATTATAGGCTTATGTCACAAGGACTGGCTCTCCCTCCCATTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTAGGATTATAGGCTTATGTCACAAGGACTGGCTCTCCCTCCCATTC  897

seq1  CTCACAGTCTTTCAAATATCAACATGTTAAGACCTGCTCATTGTGTCCAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGTCTTTCAAATATCAACATGTTAAGACCTGCTCATTGTGTCCAT  947

seq1  GCATGTGAACAGCAGGATGGAAGGAACAGAATCCATGGCAGCAATGCCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGAACAGCAGGATGGAAGGAACAGAATCCATGGCAGCAATGCCAT  997

seq1  AAGGATGGAAGTCACAGCTCCATGGAGCAGTCCTCTGTAAGTTTCCTAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGGAAGTCACAGCTCCATGGAGCAGTCCTCTGTAAGTTTCCTAGC  1047

seq1  TTGTGTCAGTTCACTGAGTGGCCCAACTTAACAATTAACCTGAGGTGAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAGTTCACTGAGTGGCCCAACTTAACAATTAACCTGAGGTGAGA  1097

seq1  ATTC  1102
      ||||
seq2  ATTC  1101