BAC Information

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BAC

Clone NameB6Ng01-052E03
Chromosome12 (Build37)
Map Location 66,050,456 - 66,178,476
singlet/doubletdoublet
Overlap geneKlhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm
Upstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647, Gm527
Downstream geneC79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052E03.bB6Ng01-052E03.g
ACCDH875663DH875664
length1,1371,121
definitionDH875663|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E03, 5' end.DH875664|Mus musculus domesticus DNA, BAC clone: B6Ng01-052E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,050,456 - 66,051,601)(66,177,335 - 66,178,476)
sequence
gaattccccacaataacaaaacagaactactgtagcatccagctatccta
cttcttgatacacacccagcggaaagaaagtcagcacataatgaaaatcc
ccacagacttacgcttatagtggcttactgtgagaggcagatggagtcag
gagaagtggctgcaagactgcaggccagtatgcagcctagcagtatgaaa
tgaaaagaaaccctgctcgaaaccaggtaggagagaaccaactcctgtaa
aattcttctctgaccttcccacccatgtggtataccacactgtctacctg
ctgctccctcttcctctctgcttatcgctgtgtctgtctctctctcatac
acatatacacaagaaattcttttctagcaaatatgctgttaaggtccaag
gtgctaatattataataatatcactatgctgaaactaatgagttaacaac
tcaagatgtggttcaattgtacagtatttacatgcgcaggcccgggattc
ccagtatcacaaaacaaacaaaagaatgaatataaaaatcattacctgtc
ctgggctctttcattggtctacacacagtccactgattttgatgaggatc
atatctttcaatgcttgacaaatgtgagacaccgttatgcccacctacca
cgaaaataaaacctagcatgactccgacgccaaagtgaatcctcttatca
gccatgggcgcaaccatctcccaggagtccttactcggatcgtaacgctc
cacactgcaaggatttacatgatgaagaattagttcataggtcagttttg
ttacttgctagtcctgaaaaactaaagcccaccacacttttaaaattaaa
cagataaaaatagtggtaatttgtcccaaatgtttaggtatctgtggata
agataccaagtatgaaaagtttactttgtgaacaggacacatagctgaaa
gtatcttttatacagttagatatcatgagggactgcagggtcaattcatg
gatgttacatccttcatacaaaatagtggtgcagtacatttaagcacaag
tcttctttatagattgctcacagtgagtaaaaccctactaactagcctat
aaaaaaaattcttgagcaattttaaacaaagtttaga
gaattccaggccagcaacgctacatagagagatgctgtctcataaaagaa
aaaagagaaagaaagaggaaaagagaaaagaaaagggggaaaaaaagcag
caaatacagatctaaatggacaagagagatttcccagcaccctctgttct
gacagagtgaatgaaaggcgtttataatcacactagcaatagttcccatc
actgagacttattcccccaagcccgttaagaatttatgcatcctctacaa
actagcatttgaaaaaagagcttacctggcagtaagcatagttcccaagt
gccttatgagcttcatccaccacaagacactttacgtgggtggcaggaac
agcccctctagtaaggtcatttaccatgacctgcggtgtcaggaaaagaa
ccctcctgctggaccatatctccttcctgttaacagcttgagttgaacct
gtaaacaaaattaacagtgaagccgggcgtggtggcgcacgcctttaatc
ccagcaatagggaggcagaggcaggtggatttctgagttcgaggccagcc
tggtctacaaagtgagttccaggccagccggggctatacagagaaaccct
gtctcgaacacctcccccccccccccccaaagtaacagtgaagcagggtg
tagcaaaagttccctgtaaccccaggactctggagcttgaggtaggacaa
ctgtaagttcacggctagctcgctctatctggggagttccaggccagcca
agccatacaggaacacaaaacagaagaaacacacacagggacagagaaca
ctcagaaacttcagaccgtcatttatagactataaataaatagtctggcc
tacttttttaatacattcatgctctggtactctactaaagggagaacggc
tggacaatctaatgacaccttggagctctgatgcaacccagggtcaaagc
tgttattagatatgctacgagagaagaagaaggagaagaagaagtggtaa
gattctgaggggagcaattgtcaccgggaatcgttctggacgatgctgat
aagttagcattcgcccgcctccacttatacaatatttcaaaacctggcat
tacagaatattctgagatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66050456_66051601
seq2: B6Ng01-052E03.b_43_1179

seq1  GAATTCCCCACAATAACAAAACAGAACTACTGTAGCATCCAGCTATCCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCCACAATAACAAAACAGAACTACTGTAGCATCCAGCTATCCTA  50

seq1  CTTCTTGATACACACCCAGCGGAAAGAAAGTCAGCACATAATGAAAATCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGATACACACCCAGCGGAAAGAAAGTCAGCACATAATGAAAATCC  100

seq1  CCACAGACTTACGCTTATAGTGGCTTACTGTGAGAGGCAGATGGAGTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTTACGCTTATAGTGGCTTACTGTGAGAGGCAGATGGAGTCAG  150

seq1  GAGAAGTGGCTGCAAGACTGCAGGCCAGTATGCAGCCTAGCAGTATGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGTGGCTGCAAGACTGCAGGCCAGTATGCAGCCTAGCAGTATGAAA  200

seq1  TGAAAAGAAACCCTGCTCGAAACCAGGTAGGAGAGAACCAACTCCTGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGAAACCCTGCTCGAAACCAGGTAGGAGAGAACCAACTCCTGTAA  250

seq1  AATTCTTCTCTGACCTTCCCACCCATGTGGTATACCACACTGTCTACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCTCTGACCTTCCCACCCATGTGGTATACCACACTGTCTACCTG  300

seq1  CTGCTCCCTCTTCCTCTCTGCTTATCGCTGTGTCTGTCTCTCTCTCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCCTCTTCCTCTCTGCTTATCGCTGTGTCTGTCTCTCTCTCATAC  350

seq1  ACATATACACAAGAAATTCTTTTCTAGCAAATATGCTGTTAAGGTCCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATACACAAGAAATTCTTTTCTAGCAAATATGCTGTTAAGGTCCAAG  400

seq1  GTGCTAATATTATAATAATATCACTATGCTGAAACTAATGAGTTAACAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAATATTATAATAATATCACTATGCTGAAACTAATGAGTTAACAAC  450

seq1  TCAAGATGTGGTTCAATTGTACAGTATTTACATGCGCAGGCCCGGGATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGTGGTTCAATTGTACAGTATTTACATGCGCAGGCCCGGGATTC  500

seq1  CCAGTATCACAAAACAAACAAAAGAATGAATATAAAAATCATTACCTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATCACAAAACAAACAAAAGAATGAATATAAAAATCATTACCTGTC  550

seq1  CTGGGCTCTTTCATTGGTCTACACACAGTCCACTGATTTTGATGAGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTCTTTCATTGGTCTACACACAGTCCACTGATTTTGATGAGGATC  600

seq1  ATATCTTTCAATGCTTGACAAATGTGAGACACCGTTATGCCCACCTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTTTCAATGCTTGACAAATGTGAGACACCGTTATGCCCACCTACCA  650

seq1  CGAAAATAAAACCTAGCATGACTCCGACGCCAAAGTGAATCCTCTTATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAATAAAACCTAGCATGACTCCGACGCCAAAGTGAATCCTCTTATCA  700

seq1  GCCATGGGCGCAACCATCTCCCAGGAGTCCTTACTCGGATCGTAACGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGCGCAACCATCTCCCAGGAGTCCTTACTCGGATCGTAACGCTC  750

seq1  CACACTGCAAGGATTTACATGATGAAGAATTAGTTCATAGGTCAGTTTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCAAGGATTTACATGATGAAGAATTAGTTCATAGGTCAGTTTTG  800

seq1  TTACTTGCTAGTCCTGAAAAACTAAAGCCCACCACACTTTTAAAATTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGCTAGTCCTGAAAAACTAAAGCCCACCACACTTTTAAAATTAAA  850

seq1  CAGATAAAAATAGTGGTAATTTGTCCCAAATGTTTAGGTATCTGTGGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAAAAATAGTGGTAATTTGTCCCAAATGTTTAGGTATCTGTGGATA  900

seq1  AGATACCAAGTATGAAAAGTTTACTTTGTGAACAGGACACAATAGCTGAA  950
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGATACCAAGTATGAAAAGTTTACTTTGTGAACAGGACAC-ATAGCTGAA  949

seq1  AGTTATTCTTTTATACAGTTAGATATCCATGAGGGACTGCAGGGTCAATT  1000
      |||   |||||||||||||||||||| |||||||||||||||||||||||
seq2  AGT--ATCTTTTATACAGTTAGATAT-CATGAGGGACTGCAGGGTCAATT  996

seq1  CCATGGATGTTACAATCCTTCATACAAAATAGTGGTGCAGTACATTTAAG  1050
       |||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  -CATGGATGTTAC-ATCCTTCATACAAAATAGTGGTGCAGTACATTTAAG  1044

seq1  CACAAGTCTTCTTTATTAGATTGCTCACAGTGAGTAAAACACTACT-ACT  1099
      ||||||||||||||| |||||||||||||||||||||||| ||||| |||
seq2  CACAAGTCTTCTTTA-TAGATTGCTCACAGTGAGTAAAACCCTACTAACT  1093

seq1  AG-CTATAAAAAAAAAATCTCTTGAGCAATTTTAAACAAAGGTTTAGA  1146
      || ||||||||||||    ||||||||||||||||||||| |||||||
seq2  AGCCTATAAAAAAAA---TTCTTGAGCAATTTTAAACAAA-GTTTAGA  1137

seq1: chr12_66177335_66178476
seq2: B6Ng01-052E03.g_68_1188 (reverse)

seq1  AGTATCT----------TGTAAATTGCCAGTGTTTTGAAATATTTGTATA  40
      |||||||          |||||  |||||| ||||||||||| |||||||
seq2  AGTATCTCAGAATATTCTGTAA--TGCCAG-GTTTTGAAATA-TTGTATA  46

seq1  TGAGTGGGAGGCGGGGCGGAATGCTAAACTTATTTCCAGCATCCGTCCCA  90
        ||| |||||||||   ||||||| |||||||   |||||| ||| |||
seq2  --AGT-GGAGGCGGG--CGAATGCT-AACTTAT---CAGCAT-CGT-CCA  85

seq1  GAACGATTTCCCGGTTGAACAATTTGCTTCCCCTCAG-ATCTTACCACCT  139
      |||||| ||||||||   |||| |||| ||||||||| ||||||||||  
seq2  GAACGA-TTCCCGGT--GACAA-TTGC-TCCCCTCAGAATCTTACCAC--  128

seq1  TCTTCTTTCTTCTTTCTTCTTTCTTCTTCTGTAG--GCATTATCTAATAA  187
            ||||||||   || |||||||||| | |  ||| ||||||||||
seq2  ------TTCTTCTT--CTCCTTCTTCTTCTCTCGTAGCA-TATCTAATAA  169

seq1  CAGCTTTGACCCTTGGGTTGCATCAGAGCTCCAAGGTGTCATTACGATTG  237
      |||||||||||| ||||||||||||||||||||||||||||||| |||||
seq2  CAGCTTTGACCC-TGGGTTGCATCAGAGCTCCAAGGTGTCATTA-GATTG  217

seq1  TCCAGCCGTTCTCCCTTTAAGTAGAGTACCAGAGCATGAATGTATTAAAA  287
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TCCAGCCGTTCTCCCTTT-AGTAGAGTACCAGAGCATGAATGTATTAAAA  266

seq1  AAGTAGGCCAGACTATTTATTTATAGTCTATAGATGACGGTCTGAAGTTT  337
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AAGTAGGCCAGACTATTTATTTATAGTCTATAAATGACGGTCTGAAGTTT  316

seq1  CTGAGTGTTCTCTGTCCCTGTGTGTGTTTCTTCTGTTTTGTGTTCCTGTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGTTCTCTGTCCCTGTGTGTGTTTCTTCTGTTTTGTGTTCCTGTA  366

seq1  TGGCTTGGCTGGCCTGGAACTCCCCAGATAGAGCGAGCTAGCCGTGAACT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGGCTGGCCTGGAACTCCCCAGATAGAGCGAGCTAGCCGTGAACT  416

seq1  TACAGTTGTCCTACCTCAAGCTCCAGAGTCCTGGGGTTACAGGGAACTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTTGTCCTACCTCAAGCTCCAGAGTCCTGGGGTTACAGGGAACTTT  466

seq1  TGCTACACCCTGCTTCACTGTTACTTTGGGGGGGGGGGGGGGAGGTGTTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTACACCCTGCTTCACTGTTACTTTGGGGGGGGGGGGGGGAGGTGTTC  516

seq1  GAGACAGGGTTTCTCTGTATAGCCCCGGCTGGCCTGGAACTCACTTTGTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCCCCGGCTGGCCTGGAACTCACTTTGTA  566

seq1  GACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCTATT  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTCTGCCTCCCTATT  616

seq1  GCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTTCACTGTTAATTTTG  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTTCACTGTTAATTTTG  666

seq1  TTTACAGGTTCAACTCAAGCTGTTAACAGGAAGGAGATATGGTCCAGCAG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGGTTCAACTCAAGCTGTTAACAGGAAGGAGATATGGTCCAGCAG  716

seq1  GAGGGTTCTTTTCCTGACACCGCAGGTCATGGTAAATGACCTTACTAGAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTTCTTTTCCTGACACCGCAGGTCATGGTAAATGACCTTACTAGAG  766

seq1  GGGCTGTTCCTGCCACCCACGTAAAGTGTCTTGTGGTGGATGAAGCTCAT  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTCCTGCCACCCACGTAAAGTGTCTTGTGGTGGATGAAGCTCAT  816

seq1  AAGGCACTTGGGAACTATGCTTACTGCCAGGTAAGCTCTTTTTTCAAATG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTTGGGAACTATGCTTACTGCCAGGTAAGCTCTTTTTTCAAATG  866

seq1  CTAGTTTGTAGAGGATGCATAAATTCTTAACGGGCTTGGGGGAATAAGTC  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTGTAGAGGATGCATAAATTCTTAACGGGCTTGGGGGAATAAGTC  916

seq1  TCAGTGATGGGAACTATTGCTAGTGTGATTATAAACGCCTTTCATTCACT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGATGGGAACTATTGCTAGTGTGATTATAAACGCCTTTCATTCACT  966

seq1  CTGTCAGAACAGAGGGTGCTGGGAAATCTCTCTTGTCCATTTAGATCTGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGAACAGAGGGTGCTGGGAAATCTCTCTTGTCCATTTAGATCTGT  1016

seq1  ATTTGCTGCTTTTTTTCCCCCTTTTCTTTTCTCTTTTCCTCTTTCTTTCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCTGCTTTTTTTCCCCCTTTTCTTTTCTCTTTTCCTCTTTCTTTCT  1066

seq1  CTTTTTTCTTTTATGAGACAGCATCTCTCTATGTAGCGTTGCTGGCCTGG  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCTTTTATGAGACAGCATCTCTCTATGTAGCGTTGCTGGCCTGG  1116

seq1  AATTC  1142
      |||||
seq2  AATTC  1121