BAC Information

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BAC

Clone NameB6Ng01-052I06
Chromosome12 (Build37)
Map Location 47,739,146 - 47,848,452
singlet/doubletdoublet
Overlap geneNova1
Upstream geneLOC664952
Downstream geneLOC100039190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-052I06.bB6Ng01-052I06.g
ACCDH875849DH875850
length7591,125
definitionDH875849|Mus musculus domesticus DNA, BAC clone: B6Ng01-052I06, 5' end.DH875850|Mus musculus domesticus DNA, BAC clone: B6Ng01-052I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,739,146 - 47,739,666)(47,847,318 - 47,848,452)
sequence
gaattcttttgtggcaaaaaaaaaaaaaagtagtggtttaaataagaata
gccaacatggactcatatatttgaatatttagtcaccagggagtggaact
ctttgataggattagaaagattaggaggtgtcaccttgttggagaaactg
tgtcactgggggtgggctttgacattttctttttttttttttttttttac
ttttttttttttttttcatttttttttattaggtatttagctcatttaca
tttccaatgctataccaaaagtcccccttacccacccacccccactcccc
tacccacccactccccccctttggccctggcgttcccctgtaccggggca
cacaaagtctgcgtgtccaatgggcctctctttccagtgatggccgacta
ggccatcttttgatacatatgcagctagagtcaaaagctcaggggtactg
gttagttcataatgttgttccacctatagggttgaagttccctttagctc
cttgggtactttctctagctcctccattgggagccctgtgatccatccat
tagctgactgtgagcatccacttctgtgtttgctaggccccggcatagtc
tcacaagagacagctacatctgggtcctttcagtaaaatcttgctagtgt
atgcaatggtgtcagcatttggaagctgattatggggtggatcccgggct
ttgacatttttcaaaagcctacacagggcttttctttttctgtctggggc
actggatcc
gaattcaactaaaatgcatcaggtatgcaaaggatggtttaaaacatgac
atattacaatttaagaaataaaactcagatatgatacacattctagaata
agcacatagtaactccaaagatataacaaattgattccaaacttttaaca
tgtaatatttaaaatagtgttcattttaaccaagaaattcaaactaggga
aataggtagatgtggcacttttaaattaaaattggtgtaatctaaataaa
cattctaatatatcctgaaaaggcagcagatgaaacattgataggttagt
caaacctgatcacaagtattgtatgttgtggcaagctgtcaaatcatctc
atttgtatctggtaggagaggccagaggaagagcaaaaggaatctgagca
gtggaaatgaagtgggaaaaaaaatctcagcctcacctctgtgtgggtga
ttgactgggaagggtcatggtgagactatgaaaggatgggtgtacttggg
tggttctccacattatacacactgtgagtctcctgaactgcaaagcccaa
ggatgtgcatatacttgcattatctcagtaagagagagaaagagaactaa
attgtggaaaagcatttttataagtaaaggcacatttggtctaattgtat
aactcttcaattttagaaagcaggccaatgaggtgggattttttttgttc
ttgcttttgttgttgttgtatattttgtttgtttgtttgtttgtttgttt
ttcaagacagggattttctgtgtagccctggctgtcctggaactcacttt
atagaccaggttggcctcgaactcagaaatccacctgcctctgcctcctg
agtgctgggattaaaggtgtgcgccgccacaccagacatgttgttgtatt
ttttaacatttaaacatgacatgaagtgttatgcatgttactaagcaaca
ttacttgaaattataatagggagttaattgcttaggaaaccacttgaccc
aattttcttaatccttttggaatttcacaaatgattaaaaagaattctgt
tagtcatcacactcccacccatatacagagctaaatatttctatatggaa
tggtccacatgagtctagtttattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_47739146_47739666
seq2: B6Ng01-052I06.b_44_564

seq1  GAATTCTTTTGTGGCAAAAAAAAAAAAAAGTAGTGGTTTAAATAAGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTGTGGCAAAAAAAAAAAAAAGTAGTGGTTTAAATAAGAATA  50

seq1  GCCAACATGGACTCATATATTTGAATATTTAGTCACCAGGGAGTGGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACATGGACTCATATATTTGAATATTTAGTCACCAGGGAGTGGAACT  100

seq1  CTTTGATAGGATTAGAAAGATTAGGAGGTGTCACCTTGTTGGAGAAACTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGATAGGATTAGAAAGATTAGGAGGTGTCACCTTGTTGGAGAAACTG  150

seq1  TGTCACTGGGGGTGGGCTTTGACATTTTCTTTTTTTTTTTTTTTTTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACTGGGGGTGGGCTTTGACATTTTCTTTTTTTTTTTTTTTTTTTAC  200

seq1  TTTTTTTTTTTTTTTTCATTTTTTTTTATTAGGTATTTAGCTCATTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTTTCATTTTTTTTTATTAGGTATTTAGCTCATTTACA  250

seq1  TTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTATACCAAAAGTCCCCCTTACCCACCCACCCCCACTCCCC  300

seq1  TACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCACCCACTCCCCCCCTTTGGCCCTGGCGTTCCCCTGTACCGGGGCA  350

seq1  CACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGTCTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTA  400

seq1  GGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTG  450
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCCATCTTTTGATACATATGCAGCTAGAGTCAAAAGCTCAGGGGTACTG  450

seq1  GTTAGTTCATAATGTTGTTCCACCTATAGGGTTGAAGTTCCCTTTAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTTCATAATGTTGTTCCACCTATAGGGTTGAAGTTCCCTTTAGCTC  500

seq1  CTTGGGTACTTTCTCTAGCTC  521
      |||||||||||||||||||||
seq2  CTTGGGTACTTTCTCTAGCTC  521

seq1: chr12_47847318_47848452
seq2: B6Ng01-052I06.g_69_1193 (reverse)

seq1  AAATAAACATGACTCATGTTTGAGACCATTTCAATAT-GAAATATTTTAG  49
      ||||||||  |||||||||    ||||| ||| |||| |||||| |||||
seq2  AAATAAACTAGACTCATGT---GGACCA-TTCCATATAGAAATA-TTTAG  45

seq1  CTCTGTATATTGGGTGGAGTTTGCTGATGACTAACAGATTTCTGTTTTTA  99
      |||||||||| ||  |||||    |||||||||||||| |||  ||||||
seq2  CTCTGTATATGGGTGGGAGT---GTGATGACTAACAGAATTC--TTTTTA  90

seq1  ATCATTTGTGAAATTCCAAAAGGA-TAAGAAATTTGGGTCAGTTGGTTTC  148
      |||||||||||||||||||||||| ||||||| ||||||||  |||||||
seq2  ATCATTTGTGAAATTCCAAAAGGATTAAGAAAATTGGGTCAAGTGGTTTC  140

seq1  CTAAGC-ATTAACTCCCTATTATAATTTCAAAGTTAATGTTGCTTAGTAA  197
      |||||| ||||||||||||||||||||||||   ||||||||||||||||
seq2  CTAAGCAATTAACTCCCTATTATAATTTCAA--GTAATGTTGCTTAGTAA  188

seq1  CATGCATTAACACTTCATGTCATGTTTAAATGTTAAAAAATACAACAACA  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCA-TAACACTTCATGTCATGTTTAAATGTTAAAAAATACAACAACA  237

seq1  TGTCTGGTGTGGCGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGGTGTGGCGGCGCACACCTTTAATCCCAGCACTCAGGAGGCAGAG  287

seq1  GCAGGTGGATTTCTGAGTTCGAGGCCAACCTGGTCTATAAAGTGAGTTCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGATTTCTGAGTTCGAGGCCAACCTGGTCTATAAAGTGAGTTCC  337

seq1  AGGACAGCCAGGGCTACACAGAAAATCCCTGTCTTGAAAAACAAACAAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAGCCAGGGCTACACAGAAAATCCCTGTCTTGAAAAACAAACAAAC  387

seq1  AAACAAACAAACAAAATATACAACAACAACAAAAGCAAGAACAAAAAAAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACAAACAAAATATACAACAACAACAAAAGCAAGAACAAAAAAAA  437

seq1  TCCCACCTCATTGGCCTGCTTTCTAAAATTGAAGAGTTATACAATTAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACCTCATTGGCCTGCTTTCTAAAATTGAAGAGTTATACAATTAGAC  487

seq1  CAAATGTGCCTTTACTTATAAAAATGCTTTTCCACAATTTAGTTCTCTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGTGCCTTTACTTATAAAAATGCTTTTCCACAATTTAGTTCTCTTT  537

seq1  CTCTCTCTTACTGAGATAATGCAAGTATATGCACATCCTTGGGCTTTGCA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTTACTGAGATAATGCAAGTATATGCACATCCTTGGGCTTTGCA  587

seq1  GTTCAGGAGACTCACAGTGTGTATAATGTGGAGAACCACCCAAGTACACC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGAGACTCACAGTGTGTATAATGTGGAGAACCACCCAAGTACACC  637

seq1  CATCCTTTCATAGTCTCACCATGACCCTTCCCAGTCAATCACCCACACAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTTTCATAGTCTCACCATGACCCTTCCCAGTCAATCACCCACACAG  687

seq1  AGGTGAGGCTGAGATTTTTTTTCCCACTTCATTTCCACTGCTCAGATTCC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAGGCTGAGATTTTTTTTCCCACTTCATTTCCACTGCTCAGATTCC  737

seq1  TTTTGCTCTTCCTCTGGCCTCTCCTACCAGATACAAATGAGATGATTTGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTCTTCCTCTGGCCTCTCCTACCAGATACAAATGAGATGATTTGA  787

seq1  CAGCTTGCCACAACATACAATACTTGTGATCAGGTTTGACTAACCTATCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGCCACAACATACAATACTTGTGATCAGGTTTGACTAACCTATCA  837

seq1  ATGTTTCATCTGCTGCCTTTTCAGGATATATTAGAATGTTTATTTAGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCATCTGCTGCCTTTTCAGGATATATTAGAATGTTTATTTAGATT  887

seq1  ACACCAATTTTAATTTAAAAGTGCCACATCTACCTATTTCCCTAGTTTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAATTTTAATTTAAAAGTGCCACATCTACCTATTTCCCTAGTTTGA  937

seq1  ATTTCTTGGTTAAAATGAACACTATTTTAAATATTACATGTTAAAAGTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTGGTTAAAATGAACACTATTTTAAATATTACATGTTAAAAGTTT  987

seq1  GGAATCAATTTGTTATATCTTTGGAGTTACTATGTGCTTATTCTAGAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCAATTTGTTATATCTTTGGAGTTACTATGTGCTTATTCTAGAATG  1037

seq1  TGTATCATATCTGAGTTTTATTTCTTAAATTGTAATATGTCATGTTTTAA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCATATCTGAGTTTTATTTCTTAAATTGTAATATGTCATGTTTTAA  1087

seq1  ACCATCCTTTGCATACCTGATGCATTTTAGTTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCTTTGCATACCTGATGCATTTTAGTTGAATTC  1125