BAC Information

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BAC

Clone NameB6Ng01-053B20
Chromosome12 (Build37)
Map Location 66,884,882 - 66,972,039
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
Downstream geneLOC100040700, EG238217, Mdga2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053B20.bB6Ng01-053B20.g
ACCDH876258DH876259
length1,0551,130
definitionDH876258|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B20, 5' end.DH876259|Mus musculus domesticus DNA, BAC clone: B6Ng01-053B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,884,882 - 66,885,952)(66,970,898 - 66,972,039)
sequence
gaattcacagtactgtggtaaataatggaaatgcttgcatttgccacagt
gcctttctctgtggatctcttgaagcagtatataaaacttcataaatatc
ttggtgttcatagatagtggaggctgtattctagtccattagtgtgtcac
attaattattgtgcagtgatttgcacatcaagaatcaggacaagtaaaca
ctgctgagtgataaattaaaacgctacaagtggaaccgtgcagcaggata
atcaactcagcaatctgtaggaacatcctctctgtgcatattgcttctgc
tggtctccatgttttctttcctccatttttttttttgagggctactgtag
cctgctgttggttacaggattttcagggcctgacaacagtccacttctga
gcagctggcattgatacttttttttttctttgcccctttggttatttttt
ttcctattgacaattcttttgaagattgtcaatagacatttctgaacaca
tggagaaactacattcacagttaccttgttttaggaagccagtgtgattt
gaagaatgggtggggtaaacactaactcttacacgcgttcacgaccggcc
aggaagaacgcaacaaaccggaatcttctgcggcaaaactttattgctta
catcttcaggagccagagtgcaagagaaagaacaagaacaagaaagcaag
agcaagagggcaagaaaaagaacaagaacaagaaagcaagagagcaagaa
tgagaaaacaagagagagaaaaggaacaagaacaagaaagcaagagagag
aaaaagcaagaacaagagagagaaaaagaatggcaaaaccccgtcccttt
taagagaattatcctccgcctagacgtattactccctgattggctgcagc
ccatcggctcagttgtcatcacagaaagcagaacacatggcgggaaactg
cccctgcacgtgtgcagattatgtttacacttagacaagctgtcagcgca
tcttatatggcaatgtgagagcggctccaacatctcccctttcttaataa
gagca
gaattcactaaggataatgaaaatgcaatggaagccatttgtatcaagct
gtctgaattataagaattaataacactaaaggaaacaccagaacaaaaag
actgaccagaagagaaagtttgggcattggtaaaggagcaagtattcagg
ttatagaggttctaaattgaactgataaaaaaggtagaaagctcttaggg
gggataataagagaaaactcagacctagacagagatgcaaatatccaagt
gtaggaaagctgaggttctgttcagattctattcatcttatcgacacact
aatcacatcagactccaaaaggaggttggttgatgtagaaatattcaatt
ctataagagaaaaagaaataatacacaaggctgaacaattcacctgatat
cagacttctacacagaaaccttagagactcaaatttgtaaaatgggggtt
ttaccctatcaaaagacaaacaaccaagtgaaaaaacaaacaaacaaaca
aacaaacaaacaaacacctcagttttgtccagagcattttatccaacaaa
tgcatcatttataaatgaaggcaggaaaagataaaaataatcatattctt
aagatataatttattctttataaaagaaaatttgccatctgaaagaaact
gtactaatgattttgaagaaaacattgaagttcttaaactcacaataaga
gtaattataaagattaattcacagtgtaataacgctataaatatggcata
aaagtcactgataatttattatagaaagtgaaagacaaaacagctaaaaa
taaaactatattgaactaataaattgaacttatttcaattccttagtatg
ctaaggaatagatatggaatatcaggaaatacaaatcaaattttcattgg
gtcccgtttactcagccagggaggtgatcattaagagacaaaaacaaggg
gctagaagatggctcagatgttaaaagccttgattgctcttgctgaggac
ctgagttccatcccccacacccacacagcagctcctcactgttgtactcc
atttggatcaatgccacatggcatcagtaacacactgcatcccttagtgc
atatacacacattgaaatattttttaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66884882_66885952
seq2: B6Ng01-053B20.b_42_1096

seq1  GAATTCACAGTACTGTGGTAAATAATGGAAATGCTTGCATTTGCCACAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTACTGTGGTAAATAATGGAAATGCTTGCATTTGCCACAGT  50

seq1  GCCTTTCTCTGTGGATCTCTTGAAGCAGTATATAAAACTTCATAAATATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTCTGTGGATCTCTTGAAGCAGTATATAAAACTTCATAAATATC  100

seq1  TTGGTGTTCATAGATAGTGGAGGCTGTATTCTAGTCCATTAGTGTGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGTTCATAGATAGTGGAGGCTGTATTCTAGTCCATTAGTGTGTCAC  150

seq1  ATTAATTATTGTGCAGTGATTTGCACATCAAGAATCAGGACAAGTAAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATTGTGCAGTGATTTGCACATCAAGAATCAGGACAAGTAAACA  200

seq1  CTGCTGAGTGATAAATTAAAACGCTACAAGTGGAACCGTGCAGCAGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGAGTGATAAATTAAAACGCTACAAGTGGAACCGTGCAGCAGGATA  250

seq1  ATCAACTCAGCAATCTGTAGGAACATCCTCTCTGTGCATATTGCTTCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTCAGCAATCTGTAGGAACATCCTCTCTGTGCATATTGCTTCTGC  300

seq1  TGGTCTCCATGTTTTCTTTCCTCCATTTTTTTTTTTGAGGGCTACTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTCCATGTTTTCTTTCCTCCATTTTTTTTTTTGAGGGCTACTGTAG  350

seq1  CCTGCTGTTGGTTACAGGATTTTCAGGGCCTGACAACAGTCCACTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTTGGTTACAGGATTTTCAGGGCCTGACAACAGTCCACTTCTGA  400

seq1  GCAGCTGGCATTGATACTTTTTTTTTTCTTTGCCCCTTTGGTTATTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTGGCATTGATACTTTTTTTTTTCTTTGCCCCTTTGGTTATTTTTT  450

seq1  TTCCTATTGACAATTCTTTTGAAGATTGTCAATAGACATTTCTGAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTATTGACAATTCTTTTGAAGATTGTCAATAGACATTTCTGAACACA  500

seq1  TGGAGAAACTACATTCACAGTTACCTTGTTTTAGGAAGCCAGTGTGATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAACTACATTCACAGTTACCTTGTTTTAGGAAGCCAGTGTGATTT  550

seq1  GAAGAATGGGTGGGGTAAACACTAACTCTTACACGCGTTCACGACCGGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAATGGGTGGGGTAAACACTAACTCTTACACGCGTTCACGACCGGCC  600

seq1  AGGAAGAACGCAACAAACCGGAATCTTCTGCGGCAAAACTTTATTGCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAACGCAACAAACCGGAATCTTCTGCGGCAAAACTTTATTGCTTA  650

seq1  CATCTTCAGGAGCCAGAGTGCAAGAGAAAGAACAAGAACAAGAAAGCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTCAGGAGCCAGAGTGCAAGAGAAAGAACAAGAACAAGAAAGCAAG  700

seq1  AGCAAGAGGGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGCAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGGGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAGAGCAAGAA  750

seq1  TGAGAAAACAAGAGAGAGAAAAGGAACAAGAACAAGAAAGCAAGAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAACAAGAGAGAGAAAAGGAACAAGAACAAGAAAGCAAGAGAGAG  800

seq1  AAAAAGCAAGAACAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCCTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCAAGAACAAGAGAGAGAAAAAGAATGGCAAAACCCCGTCCCTTT  850

seq1  TAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCTGATTGGCTGCA  900
      ||| ||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TAA-GAGAATTATCCTCCGCCTA-GACGTATTACTCCCTGATTGGCTGCA  898

seq1  GCCCATCGGCTCAGTTGTCATCACAAGAAAGGCAGAACACATGGCGGGAA  950
      |||||||||||||||||||||||| ||||| ||||||||||||||||| |
seq2  GCCCATCGGCTCAGTTGTCATCAC-AGAAA-GCAGAACACATGGCGGG-A  945

seq1  AACTGCCCCTGCACGTGTGCAGATTATGTTTACCACTTAGAACACAGCTG  1000
      |||||||||||||||||||||||||||||||| ||||||| ||| |||||
seq2  AACTGCCCCTGCACGTGTGCAGATTATGTTTA-CACTTAG-ACA-AGCTG  992

seq1  TCAGCGCCATCTTATAATGGCAAATGTGAGAGCGGCTCCCAACATCTCCC  1050
      |||||| |||||||| ||||| ||||||||||||||| ||||||||||||
seq2  TCAGCG-CATCTTAT-ATGGC-AATGTGAGAGCGGCT-CCAACATCTCCC  1038

seq1  CCTTTTCTTTTAATAAGAGCA  1071
      |  ||||  ||||||||||||
seq2  C--TTTC--TTAATAAGAGCA  1055

seq1: chr12_66970898_66972039
seq2: B6Ng01-053B20.g_67_1196 (reverse)

seq1  TTCTTTAAAATAAATTAATTTTCAATGTGTGTATATGCACTAAGTGGATG  50
      ||||| ||||      |  ||||||||||||||||||||||||| |||||
seq2  TTCTTAAAAA------ATATTTCAATGTGTGTATATGCACTAAG-GGATG  43

seq1  CAAGTGTGTTTACTGATGCCCATGTGGGCATCTGATCCAAATGGAGTTAC  100
      | |||||| ||||||||| |||||| ||||| |||||||||||||| |||
seq2  C-AGTGTG-TTACTGATG-CCATGT-GGCAT-TGATCCAAATGGAG-TAC  87

seq1  AAACAGTGA-GAGCTGCCTGTTGTGGGTGTGGGGGATGGAACTCAGGTCC  149
       |||||||| |||||| ||| |||||||||||||||||||||||||||||
seq2  -AACAGTGAGGAGCTG-CTG-TGTGGGTGTGGGGGATGGAACTCAGGTCC  134

seq1  TCAGCAAGAGCAATCAAGGCTTTTAACATCTGAGCCATCTTCTAGCCCCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAAGAGCAATCAAGGCTTTTAACATCTGAGCCATCTTCTAGCCCCT  184

seq1  TGTTTTTGTCTCTTAATGATCACCTCCCTGGCTGAGTAAACGGGACCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTCTCTTAATGATCACCTCCCTGGCTGAGTAAACGGGACCCAA  234

seq1  TGAAAATTTGATTTGTATTTCCCTGATATTCCATATCTATTCCTTAGCAT  299
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGAAAATTTGATTTGTATTT-CCTGATATTCCATATCTATTCCTTAGCAT  283

seq1  ACTAAGGAATTGAAATAAGTTCAATTTATTAGTTCAATATAGTTTTATTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGGAATTGAAATAAGTTCAATTTATTAGTTCAATATAGTTTTATTT  333

seq1  TTAGCTGTTTTGTCTTTCACTTTCTATAATAAATTATCAGTGACTTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTTTTGTCTTTCACTTTCTATAATAAATTATCAGTGACTTTTAT  383

seq1  GCCATATTTATAGCGTTATTACACTGTGAATTAATCTTTATAATTACTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATATTTATAGCGTTATTACACTGTGAATTAATCTTTATAATTACTCT  433

seq1  TATTGTGAGTTTAAGAACTTCAATGTTTTCTTCAAAATCATTAGTACAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTGAGTTTAAGAACTTCAATGTTTTCTTCAAAATCATTAGTACAGT  483

seq1  TTCTTTCAGATGGCAAATTTTCTTTTATAAAGAATAAATTATATCTTAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAGATGGCAAATTTTCTTTTATAAAGAATAAATTATATCTTAAG  533

seq1  AATATGATTATTTTTATCTTTTCCTGCCTTCATTTATAAATGATGCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGATTATTTTTATCTTTTCCTGCCTTCATTTATAAATGATGCATTT  583

seq1  GTTGGATAAAATGCTCTGGACAAAACTGAGG----TGTTTGTTTGTTTGT  645
      |||||||||||||||||||||||||||||||    |||||||||||||||
seq2  GTTGGATAAAATGCTCTGGACAAAACTGAGGTGTTTGTTTGTTTGTTTGT  633

seq1  TTGTTTGTTTGTTTTTTCACTTGGTTGTTTGTCTTTTGATAGGGTAAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTTGTTTTTTCACTTGGTTGTTTGTCTTTTGATAGGGTAAAAC  683

seq1  CCCCATTTTACAAATTTGAGTCTCTAAGGTTTCTGTGTAGAAGTCTGATA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTTACAAATTTGAGTCTCTAAGGTTTCTGTGTAGAAGTCTGATA  733

seq1  TCAGGTGAATTGTTCAGCCTTGTGTATTATTTCTTTTTCTCTTATAGAAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGAATTGTTCAGCCTTGTGTATTATTTCTTTTTCTCTTATAGAAT  783

seq1  TGAATATTTCTACATCAACCAACCTCCTTTTGGAGTCTGATGTGATTAGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTTCTACATCAACCAACCTCCTTTTGGAGTCTGATGTGATTAGT  833

seq1  GTGTCGATAAGATGAATAGAATCTGAACAGAACCTCAGCTTTCCTACACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCGATAAGATGAATAGAATCTGAACAGAACCTCAGCTTTCCTACACT  883

seq1  TGGATATTTGCATCTCTGTCTAGGTCTGAGTTTTCTCTTATTATCCCCCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATTTGCATCTCTGTCTAGGTCTGAGTTTTCTCTTATTATCCCCCC  933

seq1  TAAGAGCTTTCTACCTTTTTTATCAGTTCAATTTAGAACCTCTATAACCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGCTTTCTACCTTTTTTATCAGTTCAATTTAGAACCTCTATAACCT  983

seq1  GAATACTTGCTCCTTTACCAATGCCCAAACTTTCTCTTCTGGTCAGTCTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTTGCTCCTTTACCAATGCCCAAACTTTCTCTTCTGGTCAGTCTT  1033

seq1  TTTGTTCTGGTGTTTCCTTTAGTGTTATTAATTCTTATAATTCAGACAGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCTGGTGTTTCCTTTAGTGTTATTAATTCTTATAATTCAGACAGC  1083

seq1  TTGATACAAATGGCTTCCATTGCATTTTCATTATCCTTAGTGAATTC  1142
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAAATGGCTTCCATTGCATTTTCATTATCCTTAGTGAATTC  1130