BAC Information

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BAC

Clone NameB6Ng01-053O12
Chromosome12 (Build37)
Map Location 42,945,195 - 43,030,051
singlet/doubletdoublet
Overlap geneImmp2l
Upstream geneLrrn3
Downstream geneEG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053O12.bB6Ng01-053O12.g
ACCDH876814DH876815
length1,169971
definitionDH876814|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O12, 5' end.DH876815|Mus musculus domesticus DNA, BAC clone: B6Ng01-053O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,028,871 - 43,030,051)(42,945,195 - 42,946,171)
sequence
gaattcttaaggaatacatgggaaaatacataaaatactatttaaaagag
cagagagacttactgtgcacttacccaaagtgcttcccagcaatgattat
atacataggaaaatcacatatatcccatctacttctgtctgagacactct
catatttttccaaagttcattgttatcggtattcaactcctgaattcaag
gccaccttgtaagaactacttcccatgtagatcttcacgatttcatattg
ccccatctgtttcttctctctgcactactttctttcatactctccttcat
gactgatatagagttgagaagcctttaccaaccaaaattgttttgaattt
taaaagtttcacacacacataggtgtagatcttaggaaaaaatcctcagt
caaaatataaaattcatttgtgtttcatatacacctaacacatatagcta
agaggtaattttatataacattttaaataatttttgtatataaaaaggta
ctctcatgatgtaaactttctccatttatggtatcctgtcaaatctgaaa
gtttgttcatggttattgaattattgttgatttacatcgtggtaaaacca
tgaggtgaaggacttcagcagctactgttttctgggggcttacagggctc
tgtggcacctgctggggctgggcaaacactttctaagaagataattgaga
gcatgccaagaaagcctctcttccctcaggctgactactacaagttattg
aggaattctacaaagagtggggaaaacctgagggaacagaaaatgatgaa
gccttaagagcaaagtgcaaaccaaaccagtgttggggtttgatgtggaa
agaacttcattgcaaggaacactagaatggaaagcagtttctgtgataga
ttgtacatctagtctttttgctgctgcagttgcagagatgcacaggaagt
acagagaccctggcaagaaggatgccaagggataggaatggcagtttccc
ttgtcaaaagtgggtcatctcaattaagtgctaatgtaccattcttgcat
aaaaagaaaaacgctgtcaatcatgtaaactgtctccaagatgagtgctc
atagaaataaagggatttttttttggtgattgaaaggctgtagggatatg
aaaatatgactttactttc
gaattcaaacatgagagaggaaaaacaaatatcaaagtgtaggggaaaga
ttatatggaatgaaaaataaatgttataaatttgagttcttcagaagttt
tattgcagtatttttgagtatattttttcttatagtcagtaaatagccta
caaagcatataaatatccctatagtacaataaagcctctatgtcttacat
ctgttgtatggataaatacatcatggatgttgcaaggtggtatctttaag
aagactcctgaaatagaaagtggaaaaacagtgaccctttcttatactcc
ttccttcatgtgtaatcttaaataagtcgctttctaactagctaatatta
aaatgataagcaatatggaaaaatctagtatgttagggcccatttttcat
tctctatttggatagtctaatgttaatgctgcaatagatccctgggactc
aaccacactgcacaggttcactggaattatttgtaagaccagccacatgg
atgctaaatcactactaacagagttgtaaatatttaacaaaatgttgtat
cattagaaataagtcgaagccgagtactatagctcatgcctgtaatccta
gcagttgagcaattaaagcaggaggatggctgtgagttgaaggccagtca
ggaatacttactgaactcttggctaacacacggtactgagtgagaccctg
gcaaacaatacaaaatcagtcaattaattgaaaataaattggtactatat
caaagattttataccttcaaactacaaacaaggcaacttgcctactttcc
atgtttcttttcaggtagaactgatcctcatggctcctacagccatttgc
aataatttaaacatcaaactacatgaatctacgtcctaaaaatatgatat
aaatgatagcaattaccttatttaaaggtaacatctatatgttttggaag
acattttacaagtttttagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_43028871_43030051
seq2: B6Ng01-053O12.b_44_1212 (reverse)

seq1  GAAAGATAAAGTCTTAATATTTACATATCCCTACAGCCTTACAAATCTAC  50
      ||||| |||||||   |||||| ||||||||||||||||| | |||| ||
seq2  GAAAG-TAAAGTC---ATATTTTCATATCCCTACAGCCTTTC-AATC-AC  44

seq1  CAAAAAAAAAATCACTTTATTTTCTATGACCA-TCACTCTTTGAGAACAA  99
      | ||||||||||| ||||| ||||||||| || ||| |||| ||||   |
seq2  C-AAAAAAAAATCCCTTTA-TTTCTATGAGCACTCA-TCTTGGAGA--CA  89

seq1  GTCTACATGAATGGACAGCG-TCTTCTCTTTATGCAAGATTGGTAACATA  148
      || |||||| || ||||||| | |||| ||||||||||| |||||   ||
seq2  GTTTACATG-ATTGACAGCGTTTTTCTTTTTATGCAAGAATGGTACATTA  138

seq1  GCACTTAATTGAGATGACCACCTTTTGAC-AGGGAAACTGCCATTCCTAT  197
      |||||||||||||||||||  |||||||| ||||||||||||||||||||
seq2  GCACTTAATTGAGATGACCCACTTTTGACAAGGGAAACTGCCATTCCTAT  188

seq1  CCCTTGGCATCCTTCCTGCCAGGGTCTCTGTAACTTCCTGTGCATCTCTG  247
      ||||||||||||||| ||||||||||||||| ||||||||||||||||||
seq2  CCCTTGGCATCCTTCTTGCCAGGGTCTCTGT-ACTTCCTGTGCATCTCTG  237

seq1  CAACTGCAGCAGCAAAAAGACTAGATGTACAATCTATCACAAGAAACTGC  297
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CAACTGCAGCAGCAAAAAGACTAGATGTACAATCTATCAC-AGAAACTGC  286

seq1  TTTCCATTCTAGTGTTCCTTGCAATGAAGTTCTTTTCCACATCAAACCCC  347
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTCCATTCTAGTGTTCCTTGCAATGAAGTTC-TTTCCACATCAAACCCC  335

seq1  AACACTGGTTTGGTTTGCACTTTGCTCTTAAGGCTTCATCATTTTCTGTT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTGGTTTGGTTTGCACTTTGCTCTTAAGGCTTCATCATTTTCTGTT  385

seq1  CCCTCAGGTTTTCCCCACTCTTTGTAGAATTCCTCAATAACTTGTAGTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGGTTTTCCCCACTCTTTGTAGAATTCCTCAATAACTTGTAGTAG  435

seq1  TCAGCCTGAGGGAAGAGAGGCTTTCTTGGCATGCTCTCAATTATCTTCTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTGAGGGAAGAGAGGCTTTCTTGGCATGCTCTCAATTATCTTCTT  485

seq1  AGAAAGTGTTTGCCCAGCCCCAGCAGGTGCCACAGAGCCCTGTAAGCCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGTGTTTGCCCAGCCCCAGCAGGTGCCACAGAGCCCTGTAAGCCCC  535

seq1  CAGAAAACAGTAGCTGCTGAAGTCCTTCACCTCATGGTTTTACCACGATG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAACAGTAGCTGCTGAAGTCCTTCACCTCATGGTTTTACCACGATG  585

seq1  TAAATCAACAATAATTCAATAACCATGAACAAACTTTCAGATTTGACAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCAACAATAATTCAATAACCATGAACAAACTTTCAGATTTGACAGG  635

seq1  ATACCATAAATGGAGAAAGTTTACATCATGAGAGTACCTTTTTATATACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCATAAATGGAGAAAGTTTACATCATGAGAGTACCTTTTTATATACA  685

seq1  AAAATTATTTAAAATGTTATATAAAATTACCTCTTAGCTATATGTGTTAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTTAAAATGTTATATAAAATTACCTCTTAGCTATATGTGTTAG  735

seq1  GTGTATATGAAACACAAATGAATTTTATATTTTGACTGAGGATTTTTTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATATGAAACACAAATGAATTTTATATTTTGACTGAGGATTTTTTCC  785

seq1  TAAGATCTACACCTATGTGTGTGTGAAACTTTTAAAATTCAAAACAATTT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATCTACACCTATGTGTGTGTGAAACTTTTAAAATTCAAAACAATTT  835

seq1  TGGTTGGTAAAGGCTTCTCAACTCTATATCAGTCATGAAGGAGAGTATGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGTAAAGGCTTCTCAACTCTATATCAGTCATGAAGGAGAGTATGA  885

seq1  AAGAAAGTAGTGCAGAGAGAAGAAACAGATGGGGCAATATGAAATCGTGA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGTAGTGCAGAGAGAAGAAACAGATGGGGCAATATGAAATCGTGA  935

seq1  AGATCTACATGGGAAGTAGTTCTTACAAGGTGGCCTTGAATTCAGGAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTACATGGGAAGTAGTTCTTACAAGGTGGCCTTGAATTCAGGAGTT  985

seq1  GAATACCGATAACAATGAACTTTGGAAAAATATGAGAGTGTCTCAGACAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCGATAACAATGAACTTTGGAAAAATATGAGAGTGTCTCAGACAG  1035

seq1  AAGTAGATGGGATATATGTGATTTTCCTATGTATATAATCATTGCTGGGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGATGGGATATATGTGATTTTCCTATGTATATAATCATTGCTGGGA  1085

seq1  AGCACTTTGGGTAAGTGCACAGTAAGTCTCTCTGCTCTTTTAAATAGTAT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTTTGGGTAAGTGCACAGTAAGTCTCTCTGCTCTTTTAAATAGTAT  1135

seq1  TTTATGTATTTTCCCATGTATTCCTTAAGAATTC  1181
      ||||||||||||||||||||||||||||||||||
seq2  TTTATGTATTTTCCCATGTATTCCTTAAGAATTC  1169

seq1: chr12_42945195_42946171
seq2: B6Ng01-053O12.g_68_1038

seq1  GAATTCAAACATGAGAGAGGAAAAACAAATATCAAAGTGTAGGGGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACATGAGAGAGGAAAAACAAATATCAAAGTGTAGGGGAAAGA  50

seq1  TTATATGGAATGAAAAATAAATGTTATAAATTTGAGTTCTTCAGAAGTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGGAATGAAAAATAAATGTTATAAATTTGAGTTCTTCAGAAGTTT  100

seq1  TATTGCAGTATTTTTGAGTATATTTTTTCTTATAGTCAGTAAATAGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCAGTATTTTTGAGTATATTTTTTCTTATAGTCAGTAAATAGCCTA  150

seq1  CAAAGCATATAAATATCCCTATAGTACAATAAAGCCTCTATGTCTTACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATATAAATATCCCTATAGTACAATAAAGCCTCTATGTCTTACAT  200

seq1  CTGTTGTATGGATAAATACATCATGGATGTTGCAAGGTGGTATCTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTATGGATAAATACATCATGGATGTTGCAAGGTGGTATCTTTAAG  250

seq1  AAGACTCCTGAAATAGAAAGTGGAAAAACAGTGACCCTTTCTTATACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTCCTGAAATAGAAAGTGGAAAAACAGTGACCCTTTCTTATACTCC  300

seq1  TTCCTTCATGTGTAATCTTAAATAAGTCGCTTTCTAACTAGCTAATATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCATGTGTAATCTTAAATAAGTCGCTTTCTAACTAGCTAATATTA  350

seq1  AAATGATAAGCAATATGGAAAAATCTAGTATGTTAGGGCCCATTTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGATAAGCAATATGGAAAAATCTAGTATGTTAGGGCCCATTTTTCAT  400

seq1  TCTCTATTTGGATAGTCTAATGTTAATGCTGCAATAGATCCCTGGGACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATTTGGATAGTCTAATGTTAATGCTGCAATAGATCCCTGGGACTC  450

seq1  AACCACACTGCACAGGTTCACTGGAATTATTTGTAAGACCAGCCACATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTGCACAGGTTCACTGGAATTATTTGTAAGACCAGCCACATGG  500

seq1  ATGCTAAATCACTACTAACAGAGTTGTAAATATTTAACAAAATGTTGTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAAATCACTACTAACAGAGTTGTAAATATTTAACAAAATGTTGTAT  550

seq1  CATTAGAAATAAGTCGAAGCCGAGTACTATAGCTCATGCCTGTAATCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAATAAGTCGAAGCCGAGTACTATAGCTCATGCCTGTAATCCTA  600

seq1  GCAGTTGAGCAATTAAAGCAGGAGGATGGCTGTGAGTTGAAGGCCAGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGAGCAATTAAAGCAGGAGGATGGCTGTGAGTTGAAGGCCAGTCA  650

seq1  GGAATACTTACTGAACTCTTGGCTAACACACGGTACTGAGTGAGACCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATACTTACTGAACTCTTGGCTAACACACGGTACTGAGTGAGACCCTG  700

seq1  GCAAACAATACAAAATCAGTCAATTAATTGAAAATAAATTGGTACTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAATACAAAATCAGTCAATTAATTGAAAATAAATTGGTACTATAT  750

seq1  CAAAGATTTTATACCTTCAAACTACAAACAAGGCAACTTGCCTACTTTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATTTTATACCTTCAAACTACAAACAAGGCAACTTGCCTACTTTCC  800

seq1  ATGTTTCTTTTCAGGTAGAACTGATCCTCATGGCTCCTACAGCCATTTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCTTTTCAGGTAGAACTGATCCTCATGGCTCCTACAGCCATTTGC  850

seq1  AATAATTTAAACATCAAACTTACATGAATCTACGTCCTAAAAAATATGAT  900
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  AATAATTTAAACATCAAAC-TACATGAATCTACGTCCT-AAAAATATGAT  898

seq1  ATAAAATGAATAGCAAATTACCTTATTTAAAGGTAACATCTAATATGTTT  950
      || ||||| ||||| |||||||||||||||||||||||||| ||||||||
seq2  AT-AAATG-ATAGC-AATTACCTTATTTAAAGGTAACATCT-ATATGTTT  944

seq1  TGGAAGACATTTTACAAGTTTTTAGCA  977
      |||||||||||||||||||||||||||
seq2  TGGAAGACATTTTACAAGTTTTTAGCA  971