BAC Information

Click to search

BAC

Clone NameB6Ng01-054H24
Chromosome12 (Build37)
Map Location 98,243,223 - 98,331,159
singlet/doubletdoublet
Overlap genenone
Upstream gene1700019M22Rik, LOC100039664, EG628277
Downstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054H24.bB6Ng01-054H24.g
ACCDH877227DH877228
length1,1511,192
definitionDH877227|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H24, 5' end.DH877228|Mus musculus domesticus DNA, BAC clone: B6Ng01-054H24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,243,223 - 98,244,391)(98,329,971 - 98,331,159)
sequence
gaattctttcttcagagacttgaagttcttgtcatacaaatctttcactt
gcttagtagagtcacaccaaggtattttatattacttgtgactattctga
aaggtattgtttccctaatttctttctcatcctatttatcctttgagtag
aagaaggctactgattttttttttttttttagttaattttatacccagcc
actttgctgaagttgtttatcaaatctaggagttctctggtagaatttta
ggactcacttaagtataatatcatatcatctgcaaaggtgatattttgac
ttgttcctttccagtttgtatcagtttgacctctttttgttgtctagttg
ctctggctaggattgcaagtactttattgaataggtagggagagagtggt
cagccttgtctagtctctgattttagtggtattgctttcataggtgattc
tttcattaaacctttcaccatttaggtgatatgttgaaagccgagaatcc
agtacattgaagatgtccatcaatgagacaattggagaaatgattagata
tgattttatgatcacaattggctttgatgtggcatatttattgctccaga
tataatagatactagcatttatttcaggagtagaatctccttccagtaac
aactcccccttcatttctcatctacctacctattattttcttttcctcgt
ttttgacaaggggctctatataactcactattacagtatctaaattatat
tttgcattatattatataaaactcacagaattcattttgcctcaacattc
ttattttgctcataaaataatgaaaggaacctgactttcaaaacaatcct
gtcatatcaactccaatgaatcaatagtaataacagatttttatagtcct
accaaagccacattttcatatttcagtatcctgctcagtgtctgcttgta
ttactttgcatgataaagaaatgaagcaccgtttctacgtcatgcagata
ttacagtttctcagttcagctcagatatttgaaaaatagaaacccattgt
ttgtttgttgtttgtttgtcgaagacaaggtttctcttggttaaccttga
attcctgaatttcttgaaacaactgaatcaactcaaagaatctgtgtgcc
t
gaattccactaaatagattcagagaattaatgagactttctctgacttta
gaagggtccattctttagattctcctggaatcagcacagagcccaggaat
atgcagttcttcttcctctcttcttttctatattataaaatatgtaggac
tttaaggattagttctagggtttctacttttctctctgtgtagtatttct
tctgttgagctgactcattctcttgactgaaacgctgttttttctaatgt
tcagatatttatttctaggtaagacaattaattttatgccaatgttggat
gttgcacctgtcaccttaatattcattcaaactttattcttaagtttgtt
catgtttctgtgtggccataacacttggacatgtcaatggagtcaagata
tagatacactactttcaattaacagaatgcagggataaagcaatgagtca
gaagacttgtttctgtgcgatcagtttatgttgctattgtttctgatttc
ttttttgttttgttttgttttcaattttccaagtctttggatttaagttg
atatatccattttgttagtcttcaagcctgcttcacttcatctggtattc
acatatttatgccattggttcattgggctcctagcacttcagaatttgaa
tgaaagtatggcattggctatcctttgtctaccaaatgcttactatagac
ttggaaaatactaagtaattgagagcttctaattgcatatacctaagtaa
aacacttcattataattaattatctatcttcagtcacatgttataaatat
ctgcagttatatctacccttgcacttaaatgtatccctatttttatcttt
gtgtctcatgtttcttttcccattggaaagcaccacatattagcctttca
gactctagaatcaaaatgacttccttggcatactcgagttcatcagtgaa
gtttctcaagtacaaaaccgagaaatcagtttttatctagttcacacctc
acatcaagcaagctcctggatcttcctcatctgcaatgcattgtctcata
attccatgctgcaatttgctcttcctaaacatcaagctccttgaaactga
actgataagaaacatgtaactaatggctaacagagccaattttttcctgg
ctatggtgagcgattcttccgaaaatataagttcaatgtaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_98243223_98244391
seq2: B6Ng01-054H24.b_45_1195

seq1  GAATTCTTTCTTCAGAGACTTGAAGTTCTTGTCATACAAATCTTTCACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTCAGAGACTTGAAGTTCTTGTCATACAAATCTTTCACTT  50

seq1  GCTTAGTAGAGTCACACCAAGGTATTTTATATTACTTGTGACTATTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGTAGAGTCACACCAAGGTATTTTATATTACTTGTGACTATTCTGA  100

seq1  AAGGTATTGTTTCCCTAATTTCTTTCTCATCCTATTTATCCTTTGAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTGTTTCCCTAATTTCTTTCTCATCCTATTTATCCTTTGAGTAG  150

seq1  AAGAAGGCTACTGATTTTTTTTTTTTTTTTAGTTAATTTTATACCCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGCTACTGATTTTTTTTTTTTTTTTAGTTAATTTTATACCCAGCC  200

seq1  ACTTTGCTGAAGTTGTTTATCAAATCTAGGAGTTCTCTGGTAGAATTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCTGAAGTTGTTTATCAAATCTAGGAGTTCTCTGGTAGAATTTTA  250

seq1  GGACTCACTTAAGTATAATATCATATCATCTGCAAAGGTGATATTTTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCACTTAAGTATAATATCATATCATCTGCAAAGGTGATATTTTGAC  300

seq1  TTGTTCCTTTCCAGTTTGTATCAGTTTGACCTCTTTTTGTTGTCTAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCCTTTCCAGTTTGTATCAGTTTGACCTCTTTTTGTTGTCTAGTTG  350

seq1  CTCTGGCTAGGATTGCAAGTACTTTATTGAATAGGTAGGGAGAGAGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCTAGGATTGCAAGTACTTTATTGAATAGGTAGGGAGAGAGTGGT  400

seq1  CAGCCTTGTCTAGTCTCTGATTTTAGTGGTATTGCTTTCATAGGTGATTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTGTCTAGTCTCTGATTTTAGTGGTATTGCTTTCATAGGTGATTC  450

seq1  TTTCATTAAACCTTTCACCATTTAGGTGATATGTTGAAAGCCGAGAATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTAAACCTTTCACCATTTAGGTGATATGTTGAAAGCCGAGAATCC  500

seq1  AGTACATTGAAGATGTCCATCAATGAGACAATTGGAGAAATGATTAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATTGAAGATGTCCATCAATGAGACAATTGGAGAAATGATTAGATA  550

seq1  TGATTTTATGATCACAATTGGCTTTGATGTGGCATATTTATTGCTCCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTATGATCACAATTGGCTTTGATGTGGCATATTTATTGCTCCAGA  600

seq1  TATAATAGATACTAGCATTTATTTCAGGAGTAGAATCTCCTTCCAGTAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAGATACTAGCATTTATTTCAGGAGTAGAATCTCCTTCCAGTAAC  650

seq1  AACTCCCCCTTCATTTCTCATCTACCTACCTATTATTTTCTTTTCCTCGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCCTTCATTTCTCATCTACCTACCTATTATTTTCTTTTCCTCGT  700

seq1  TTTTGACAAGGGGCTCTATATAACTCACTATTACAGTATCTAAATTATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGACAAGGGGCTCTATATAACTCACTATTACAGTATCTAAATTATAT  750

seq1  TTTGCATTATATTATATAAAACTCACAGAATTCATTTTGCCTCAACATTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATTATATTATATAAAACTCACAGAATTCATTTTGCCTCAACATTC  800

seq1  TTATTTTGCTCATAAAATAATG-AAGGAACCTGACTTTCAAAACAATCCT  849
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  TTATTTTGCTCATAAAATAATGAAAGGAACCTGACTTTCAAAACAATCCT  850

seq1  GTCATATCAACTCCAATGAATCAATAGTAATAACAGATTTTTATAGTCCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATCAACTCCAATGAATCAATAGTAATAACAGATTTTTATAGTCCT  900

seq1  ACCAAAGCCACATTTTCATATTTCAGTATCCTGCTCAGTGTCTGCTTGTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGCCACATTTTCATATTTCAGTATCCTGCTCAGTGTCTGCTTGTA  950

seq1  TTACTTTGCATGATAAAGAAATGAAGCACCGTTTCTAAGGTCATGCAGAT  999
      |||||||||||||||||||||||||||||||||||| | |||||||||||
seq2  TTACTTTGCATGATAAAGAAATGAAGCACCGTTTCT-ACGTCATGCAGAT  999

seq1  AATTACAGGTTTCTCAGGTTCAGCTCAGATATTTGAATAATAGAAACCCA  1049
       |||||| |||||||| |||||||||||||||||||| ||||||||||||
seq2  -ATTACA-GTTTCTCA-GTTCAGCTCAGATATTTGAAAAATAGAAACCCA  1046

seq1  TTTGTTTGTTTTGTTTTGTTTTGTTTTGTCGAAGACAAGGTTTCTC-TGT  1098
       |||||||||   | ||||||   |||||||||||||||||||||| || 
seq2  -TTGTTTGTT---TGTTGTTT--GTTTGTCGAAGACAAGGTTTCTCTTGG  1090

seq1  GTACCCTTGGATATCCTGGAAATCTCTCTGAAAAACACACTGAATTCAAA  1148
       || ||||| || |||||  ||| ||| ||||| |   |||||||   ||
seq2  TTAACCTTGAAT-TCCTG--AATTTCT-TGAAACA---ACTGAAT--CAA  1131

seq1  CTCAAAAAGATCTGTGTGCCT  1169
      |||||| | ||||||||||||
seq2  CTCAAAGA-ATCTGTGTGCCT  1151

seq1: chr12_98329971_98331159
seq2: B6Ng01-054H24.g_65_1256 (reverse)

seq1  GTTACATGTGACTTATATTTTCTGGAAGAA-CGCTCACATTAGCCACGGG  49
      |||||||   |||||||||||| ||||||| |||||||  ||||||  ||
seq2  GTTACATTGAACTTATATTTTC-GGAAGAATCGCTCACCATAGCCA--GG  47

seq1  AAAAAATGGGCTCTG-TAGCAATTAGTGACATGATTC-TATCAG-TCAGT  96
      ||||||| ||||||| |||| |||||| ||||| ||| |||||| |||||
seq2  AAAAAATTGGCTCTGTTAGCCATTAGTTACATGTTTCTTATCAGTTCAGT  97

seq1  GTCAAGGAGC-TGATGGTGTAGTGAAGAGCAAA-TGCAGCATGGAA-TAT  143
       ||||||||| |||| || ||| |||||||||| |||||||||||| |||
seq2  TTCAAGGAGCTTGAT-GTTTAG-GAAGAGCAAATTGCAGCATGGAATTAT  145

seq1  GAGAC-ATGCATTGCAGATGGAGGAAGATCCAGGAGCTTGCCTGATGTGA  192
      ||||| ||||||||||||| ||||||||||||||||||||| ||||||||
seq2  GAGACAATGCATTGCAGAT-GAGGAAGATCCAGGAGCTTGCTTGATGTGA  194

seq1  -GTGTGAACTAGAT-AAAACTGATTTCTCGGTTTTGTACTTGAGAAACTT  240
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTGTGAACTAGATAAAAACTGATTTCTCGGTTTTGTACTTGAGAAACTT  244

seq1  CACTGATGAACTCGAGTATGCCAAGGAAGTCATTTTGATTCTAGAGTCCT  290
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CACTGATGAACTCGAGTATGCCAAGGAAGTCATTTTGATTCTAGAGT-CT  293

seq1  GAAAGGCTAATATGTGGTGCTTTCCAATGGGAAAAGAAACATGAGACACA  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCTAATATGTGGTGCTTTCCAATGGGAAAAGAAACATGAGACACA  343

seq1  AAGATAAAAATAGGGATACATTTAAGTGCAAGGGTAGATATAACTGCAGA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAAAATAGGGATACATTTAAGTGCAAGGGTAGATATAACTGCAGA  393

seq1  TATTTATAACATGTGACTGAAGATAGATAATTAATTATAATGAAGTGTTT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATAACATGTGACTGAAGATAGATAATTAATTATAATGAAGTGTTT  443

seq1  TACTTAGGTATATGCAATTAGAAGCTCTCAATTACTTAGTATTTTCCAAG  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGGTATATGCAATTAGAAGCTCTCAATTACTTAGTATTTTCCAAG  493

seq1  TCTATAGTAAGCATTTGGTAGACAAAGGATAGCCAATGCCATACTTTCAT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAGTAAGCATTTGGTAGACAAAGGATAGCCAATGCCATACTTTCAT  543

seq1  TCAAATTCTGAAGTGCTAGGAGCCCAATGAACCAATGGCATAAATATGTG  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTGAAGTGCTAGGAGCCCAATGAACCAATGGCATAAATATGTG  593

seq1  AATACCAGATGAAGTGAAGCAGGCTTGAAGACTAACAAAATGGATATATC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAGATGAAGTGAAGCAGGCTTGAAGACTAACAAAATGGATATATC  643

seq1  AACTTAAATCCAAAGACTTGGAAAATTGAAAACAAAACAAAACAAAAAAG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAATCCAAAGACTTGGAAAATTGAAAACAAAACAAAACAAAAAAG  693

seq1  AAATCAGAAACAATAGCAACATAAACTGATCGCACAGAAACAAGTCTTCT  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAACAATAGCAACATAAACTGATCGCACAGAAACAAGTCTTCT  743

seq1  GACTCATTGCTTTATCCCTGCATTCTGTTAATTGAAAGTAGTGTATCTAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCATTGCTTTATCCCTGCATTCTGTTAATTGAAAGTAGTGTATCTAT  793

seq1  ATCTTGACTCCATTGACATGTCCAAGTGTTATGGCCACACAGAAACATGA  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGACTCCATTGACATGTCCAAGTGTTATGGCCACACAGAAACATGA  843

seq1  ACAAACTTAAGAATAAAGTTTGAATGAATATTAAGGTGACAGGTGCAACA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTTAAGAATAAAGTTTGAATGAATATTAAGGTGACAGGTGCAACA  893

seq1  TCCAACATTGGCATAAAATTAATTGTCTTACCTAGAAATAAATATCTGAA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACATTGGCATAAAATTAATTGTCTTACCTAGAAATAAATATCTGAA  943

seq1  CATTAGAAAAAACAGCGTTTCAGTCAAGAGAATGAGTCAGCTCAACAGAA  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAAAAACAGCGTTTCAGTCAAGAGAATGAGTCAGCTCAACAGAA  993

seq1  GAAATACTACACAGAGAGAAAAGTAGAAACCCTAGAACTAATCCTTAAAG  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTACACAGAGAGAAAAGTAGAAACCCTAGAACTAATCCTTAAAG  1043

seq1  TCCTACATATTTTATAATATAGAAAAGAAGAGAGGAAGAAGAACTGCATA  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACATATTTTATAATATAGAAAAGAAGAGAGGAAGAAGAACTGCATA  1093

seq1  TTCCTGGGCTCTGTGCTGATTCCAGGAGAATCTAAAGAATGGACCCTTCT  1140
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGGGCTCTGTGCTGATTCCAGGAGAATCTAAAGAATGGACCCTTCT  1143

seq1  AAAGTCAGAGAAAGTCTCATTAATTCTCTGAATCTATTTAGTGGAATTC  1189
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGAGAAAGTCTCATTAATTCTCTGAATCTATTTAGTGGAATTC  1192