BAC Information

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BAC

Clone NameB6Ng01-054K21
Chromosome12 (Build37)4 (Build37)
Map Location 32,631,616 - 32,631,84374,487,278 - 74,487,508
singlet/doubletsingletsinglet
Overlap geneHbp1
Upstream geneSh3yl1, LOC629656, 9030611O19Rik, LOC668781, LOC100043065, LOC100043514, EG629667, LOC100043068, Lamb1-1, Dld, LOC668786, Slc26a3, Cbll1, Slc26a4, LOC100043531, Bcap29, Dus4l, LOC100043081, Gpr22
Downstream genePrkar2b, Pik3cg, 2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-054K21.bB6Ng01-054K21.g
ACCDH877359DH877360
length618231
definitionDH877359|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K21, 5' end.DH877360|Mus musculus domesticus DNA, BAC clone: B6Ng01-054K21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(32,631,616 - 32,631,843)(74,487,278 - 74,487,508)
sequence
gaattcccatgatctgtactcactgataagtggatattagcccagaaatt
tagaatacccaagatataagatacaatttgctaaacgcatgaaactcaag
aagaacgaagaccaaagtgtggacactttgccccttcttagaactgggaa
caaaacacccatggaaggacttacagagacaaagtttggagctgagacga
aaggatggaccatctagagactgccatatctggggatccatcccataatc
agcttccaaacgctgacaccattgcatacattagcaagattttgctgaaa
ggacccagatatggctgtctcttgtgagactatgcaggggcctggcaaac
acagaagtatatgctcacagtcagctattggatggatcacagggcccgca
atggaggagctagagaaagtacccaaggagctgaagggatctgcaatact
ataggtggaacaacaatatgaactaaccagtacccctggagctcatgtct
ctagctgcatatgaatcagaagatggcctagtcggccatcagtggaaaga
gaggcccattggtcgtgcaaactttatatgcctcagtacaggggaacgcc
agggccaagaagtgggag
aggggatgataaggaaggaagggagaaccagttttcttcatggatgggat
tccaaacctatatggtcatccataagtacatgcactgcagtattaagtgg
gttcagcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgcgggtgtggaaaaaagggtcattaatttatgaatggt
ttatgggcgggctaaaagatggaggtcagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_32631616_32631843
seq2: B6Ng01-054K21.b_390_663 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGCGTTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      ||| |||| |||||||||||||||||||||                ||||
seq2  GCACGACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      |||| |||| ||||||||||||| ||||||| ||||||||||| ||||||
seq2  TGATTCATATGCAGCTAGAGACATGAGCTCCAGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||  ||||||| ||||| ||||||||||||||
seq2  TATTGTTGTTCCACCTATAGTATTGCAGATCCCTTCAGCTCCTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      |||||||| ||||||||||| || ||||||||||| ||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGCGGGCCCTGTGATCC-ATCCAATAGCTGAC  249

seq1  TGTGAGCATCCACTTCTGTGTTTGC  228
      |||||||||  ||||||||||||||
seq2  TGTGAGCATATACTTCTGTGTTTGC  274

seq1: chr4_74487278_74487508
seq2: B6Ng01-054K21.g_72_302 (reverse)

seq1  TACTCACCTCCATCTTCTTTCCTGCCAATAAACCATTCATAAATTAATGA  50
      |||| ||||||||||| |  || ||| |||||||||||||||||||||||
seq2  TACTGACCTCCATCTTTTAGCCCGCCCATAAACCATTCATAAATTAATGA  50

seq1  CCTGTTTTTCTATAATTGTTGATACACACACACACACACACACACACACA  100
      ||  |||||| | |   |   | |||||||||||||||||||||||||||
seq2  CCCTTTTTTCCACACCCGCACACACACACACACACACACACACACACACA  100

seq1  CACACACACACACACACACACACTGCTGAACCCACTTAATACTGCAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACTGCTGAACCCACTTAATACTGCAGTGC  150

seq1  ATGTACTTATGGATGACCATATAGGTTTGGAATCCCATCCATGAAGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTACTTATGGATGACCATATAGGTTTGGAATCCCATCCATGAAGAAAA  200

seq1  CTGGTTCTCCCTTCCTTCCTTATCATCCCCT  231
      |||||||||||||||||||||||||||||||
seq2  CTGGTTCTCCCTTCCTTCCTTATCATCCCCT  231