BAC Information

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BAC

Clone NameB6Ng01-055D19
Chromosome12 (Build37)
Map Location 79,818,643 - 79,819,787
singlet/doubletsinglet
Overlap gene4921509E07Rik
Upstream geneLOC666659, EG626215, Gphn
Downstream geneMpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-055D19.bB6Ng01-055D19.g
ACCDH877748DH877749
length1,1321,165
definitionDH877748|Mus musculus domesticus DNA, BAC clone: B6Ng01-055D19, 5' end.DH877749|Mus musculus domesticus DNA, BAC clone: B6Ng01-055D19, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcattacctgtgtccctaacattctccatgtcggcccttcttcctc
ccatggcaaccacctggtccatcctggtactgttggacctaggcacacat
gcctgcagttccagcacagggggaactgaggctggaggatggcaaattct
aggtcagtctgtcctagtatagcaagaccatgtctcaaaacaaaacaaaa
cacccccaaaagaatgtgtcgtaatcttggtccctaaagagaaaactcca
ttttttttcttacaatgaaaataatgtgtaagatagacaatttaagatgc
tgtaagggaagtctggagagacaatggttcaggacaccagtggctctgtc
agagaacccaggtttgattcccagctcccacatgtggctcacaactgtaa
ttttagtccctggagatccaatgttatcttctggcctcagtaggcactga
gcacatgtggtgtctaaacaccatgtaaggaaaacatctatacacatgaa
aagatcctccgaggactaacgtgggagttaggaagtgcttcctcgcatgg
cagcactgctccttggctcctcgggcacacttagtttcccgcctccttca
gactgttttgtaaagatgtgttttgtgctcactctgaagccattgcaaca
tttctagtctagcattcaccatttgtgtgtttactgaagcactgagaact
ggctcaggctaattggctgctgtaccggtgctgcaccacccagccctttt
tctactttcattcttgagatgaggtctcactaagttctcaggttggccta
gagtgtgttctgtggtctgtgcaggcctcagattcacaggcttctgtcac
tctcgtcagtagctgtggtcttgggcttgtgccaccaggcctgggtaaaa
ttaccaccagaatgtccttcctgtcattatgaactgtgaaaactatttgg
atattacctatataaactatttacctctagtatgggaaacacttcagagg
cataataggtcaaactacacttattcctccattcagagacaaattgctac
tcacaggatgggttgttctccttatgtatgtgtgccatttgtgctcagtg
attgtccatgtgttggcacacgcgctgtggag
gaattctcacgtaagaaatactgaatgcttgagaagcacctgaaaaatgt
tcagcatccttaatcatcagggaaatgaaaccaaaacaaccctgagattc
cacctcgcaccagtcaaaatggctaagatcaaaaattcaggtgacagcag
atgctggcgaggatgtggagaaagaggaacactcctccattgttggtggg
attgcaagcttgtacaaccactctggaaatcagtctggtggtttctcaga
aaattggacatagtactactggaggatcccgcaatacctctcttgggcat
atatccagaagatgttccaacaggtaagaaggacacatgctccactatgt
tcatagcagccttacttataatagccagaagctggaaaaaacccagatgc
ccctcaacagaagaatggatacagaaaatatagtacatttacacaatgga
gtactactcagctattagaaagaatgaatttatgaaattcctaggcaaat
ggatggacctggagtgcatcatcctgagtgagataacccaatcacaaaag
aactcacatgatatgtactcactgataagtggatattagcccagaaattt
agaatacccaagatataagatacaatttgcgaaacacatgaaactcaaga
agaacgaagacccaagtgtggacactttgccccttctcagaattgggaac
aaaacacccatggaaggagttacagagacaaagtttggagctgagacaaa
aggatagaccatctaaagactgccatatccagggatccatcccataatca
gcctccaaatgctgacaccattgcatacactagcaagattttgctgaaag
gaccctgatatagctgtctcatgtgagactatgccggggcctagcaaaca
cagaagtggatgctcacagtcagctattggatggatcacagggccccatg
gaggagctagagaagtacccaggagctaaagggatctgcaccctatagtg
acactatatgaactaccagtacccccgagctcgtgtatctagctgcattt
gttcagcagatggctagtcgcatcatgaaagagagttccattggtctgca
aactttataagtctcagtacaggaatagctaggccaagattgaattgtgt
ggtgtaaggggactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79818643_79819787
seq2: B6Ng01-055D19.b_46_1177 (reverse)

seq1  CTCCACAAGCGCGTGTGCACACACATGGACATACACTTGAGCACAAATGT  50
      |||||| |||||||||||  |||||||||||  ||| |||||||||||| 
seq2  CTCCAC-AGCGCGTGTGCCAACACATGGACAATCAC-TGAGCACAAATG-  47

seq1  GCACCACACATACATAGAGAAGAAACAACACCAT-CTGTGAGTAGCAATT  99
          |||||||||||| || || |||||| |||| |||||||||||||||
seq2  ---GCACACATACATA-AGGAG-AACAAC-CCATCCTGTGAGTAGCAATT  91

seq1  TGTCTCTGAATGGAGGGAATAAGTGTAGTTTGACCCTTATTTATGCCTCT  149
      |||||||||||||| ||||||||||||||||||||  || ||||||||||
seq2  TGTCTCTGAATGGA-GGAATAAGTGTAGTTTGACC--TA-TTATGCCTCT  137

seq1  GAAGTGTTTCCCATACTAGAGGTAAATAGTTTATATAGGTAATATCCAAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTTTCCCATACTAGAGGTAAATAGTTTATATAGGTAATATCCAAA  187

seq1  TAGTTTTTCACAGTTCATAATGACAGGAAGGACATTCTGGTGGTAATTTT  249
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAG-TTTTCACAGTTCATAATGACAGGAAGGACATTCTGGTGGTAATTTT  236

seq1  ACCCAGGCCTGGTGGCACAAGCCCAAGACCACAGCTACTGACGAGAGTGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGGCCTGGTGGCACAAGCCCAAGACCACAGCTACTGACGAGAGTGA  286

seq1  CAGAAGCCTGTGAATCTGAGGCCTGCACAGACCACAGAACACACTCTAGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCCTGTGAATCTGAGGCCTGCACAGACCACAGAACACACTCTAGG  336

seq1  CCAACCTGAGAACTTAGTGAGACCTCATCTCAAGAATGAAAGTAGAAAAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTGAGAACTTAGTGAGACCTCATCTCAAGAATGAAAGTAGAAAAA  386

seq1  GGGCTGGGTGGTGCAGCACCGGTACAGCAGCCAATTAGCCTGAGCCAGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGGTGGTGCAGCACCGGTACAGCAGCCAATTAGCCTGAGCCAGTT  436

seq1  CTCAGTGCTTCAGTAAACACACAAATGGTGAATGCTAGACTAGAAATGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGCTTCAGTAAACACACAAATGGTGAATGCTAGACTAGAAATGTT  486

seq1  GCAATGGCTTCAGAGTGAGCACAAAACACATCTTTACAAAACAGTCTGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGGCTTCAGAGTGAGCACAAAACACATCTTTACAAAACAGTCTGAA  536

seq1  GGAGGCGGGAAACTAAGTGTGCCCGAGGAGCCAAGGAGCAGTGCTGCCAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCGGGAAACTAAGTGTGCCCGAGGAGCCAAGGAGCAGTGCTGCCAT  586

seq1  GCGAGGAAGCACTTCCTAACTCCCACGTTAGTCCTCGGAGGATCTTTTCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGAAGCACTTCCTAACTCCCACGTTAGTCCTCGGAGGATCTTTTCA  636

seq1  TGTGTATAGATGTTTTCCTTACATGGTGTTTAGACACCACATGTGCTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATAGATGTTTTCCTTACATGGTGTTTAGACACCACATGTGCTCAG  686

seq1  TGCCTACTGAGGCCAGAAGATAACATTGGATCTCCAGGGACTAAAATTAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTACTGAGGCCAGAAGATAACATTGGATCTCCAGGGACTAAAATTAC  736

seq1  AGTTGTGAGCCACATGTGGGAGCTGGGAATCAAACCTGGGTTCTCTGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTGAGCCACATGTGGGAGCTGGGAATCAAACCTGGGTTCTCTGACA  786

seq1  GAGCCACTGGTGTCCTGAACCATTGTCTCTCCAGACTTCCCTTACAGCAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTGGTGTCCTGAACCATTGTCTCTCCAGACTTCCCTTACAGCAT  836

seq1  CTTAAATTGTCTATCTTACACATTATTTTCATTGTAAGAAAAAAAATGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATTGTCTATCTTACACATTATTTTCATTGTAAGAAAAAAAATGGA  886

seq1  GTTTTCTCTTTAGGGACCAAGATTACGACACATTCTTTTGGGGGTGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTTTAGGGACCAAGATTACGACACATTCTTTTGGGGGTGTTTT  936

seq1  GTTTTGTTTTGAGACATGGTCTTGCTATACTAGGACAGACTGACCTAGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTTTTGAGACATGGTCTTGCTATACTAGGACAGACTGACCTAGAA  986

seq1  TTTGCCATCCTCCAGCCTCAGTTCCCCCTGTGCTGGAACTGCAGGCATGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATCCTCCAGCCTCAGTTCCCCCTGTGCTGGAACTGCAGGCATGT  1036

seq1  GTGCCTAGGTCCAACAGTACCAGGATGGACCAGGTGGTTGCCATGGGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTAGGTCCAACAGTACCAGGATGGACCAGGTGGTTGCCATGGGAGG  1086

seq1  AAGAAGGGCCGACATGGAGAATGTTAGGGACACAGGTAATGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGGGCCGACATGGAGAATGTTAGGGACACAGGTAATGAATTC  1132