BAC Information

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BAC

Clone NameB6Ng01-056G16
Chromosome12 (Build37)
Map Location 35,337,846 - 35,407,518
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668806, Ferd3l, Twist1, Hdac9
Downstream gene4921508M14Rik, Prps1l1, Snx13, Ahr, LOC100043575
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-056G16.bB6Ng01-056G16.g
ACCDH878579DH878580
length1,163147
definitionDH878579|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G16, 5' end.DH878580|Mus musculus domesticus DNA, BAC clone: B6Ng01-056G16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,406,334 - 35,407,518)(35,337,846 - 35,337,992)
sequence
gaattcttctggctgaactgtatagttgaggttcaattaccttagctccc
attgaaccatattctaaacaccttcctttgtaaccatcaccttgtgcaga
agtctatatttttagcctctaagcagagcttaagcactgtatttagacat
ctgacttgaagactaaaatttgctcagtgagcagaacaaatgttcagaaa
ataacatttcaaggttagtgttagtgtcctgaataaaatgccttttcttc
tttttttcctcattgaatgtaacataaataatgtgccctgactggctttc
aagattaaaaatcagagaataacggtgaagttggagacgaaagtaggaat
aattaaaaattgaaggggcttttgttgaacaattgtttgcctgaaactaa
atacacgtttttattcctgattcaataggattatggatcttagaaaaatt
ttaaaaactatatagtaatgcttgtaagaaaggggtgggcagaatgagct
cataactaccatgaaaaatatttaaagaaacacacacatgctgtcacagg
cagccacacacacctgagtgcacacacacatacctgagcacacacacctg
agcacacacacacacacatgagtacacacacaaacacacacacacacaca
cctgagtaaacacatgcctgaacacatgaacaaacacatgaatccttggg
tatattgaataaaaaagagacactatttaaatattatttgatattaatca
ttataactgaatttagtaatgtttgatcattaaccatatactagttatag
tacaagtcttattgtataactaatctgatttagtgcatttctccatcttg
taaattaaaaaaacatataatattcctgactcattttagtgagtaatagt
acattgtggatccttttttaggaagagccctaaatggtactcaagacact
atagtgttaagaaattaaacatcataaaacccattgttcccacaaaaatg
agaaaaggtttgctgctgctcagtaacttcttgtcactagtaagtatcta
gctgatagcatgactacattctccttaagtactgcatgagtggctaaatg
aagatactggaggtgacatggtgcatgccataaacccagcacttaagcag
agatgggatagca
tcctaatggtcgactataggctgaaaggtaagccaagtaagtgttttcat
attaaaaagaaagaaagaaaaagaaagaaaggaagaaagaaaaatggaag
aaaaaggaagggaagggaagggaagggaagggaagggaagggaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_35406334_35407518
seq2: B6Ng01-056G16.b_46_1208 (reverse)

seq1  TGCTATCCCCACTCCTCTGCTTTTAAGTGCTGTGTTTATGCGCATGCCAC  50
      ||||||||   |  ||||||  |||||||||| ||||||| ||||| |||
seq2  TGCTATCC---CATCTCTGC--TTAAGTGCTGGGTTTATG-GCATG-CAC  43

seq1  CATGTCCACCTCCAGTATCCTTCCATTTAGCCACACTCATGCAGTACTTA  100
      ||||| |||||||||||||  | ||||||||  |||||||||||||||||
seq2  CATGT-CACCTCCAGTATC--TTCATTTAGC--CACTCATGCAGTACTTA  88

seq1  A-GAGAATGTAGGTCATGCTAATCAGCTAGGATACTTAACTAGTGACAAG  149
      | ||||||||| |||||||| |||||||| ||||||| ||||||||||||
seq2  AGGAGAATGTA-GTCATGCT-ATCAGCTA-GATACTT-ACTAGTGACAAG  134

seq1  AAGTTTAACTGGAGCAGGCAGCAAAACCTTCTCTCATTTTTGTGGGAACA  199
      |||||  ||| ||||| ||||| ||||||| |||||||||||||||||||
seq2  AAGTT--ACT-GAGCA-GCAGC-AAACCTTTTCTCATTTTTGTGGGAACA  179

seq1  ATGGGTTTTATGATTGTTTAATTTCTTAACACTATAGTGTCTTGGGTACC  249
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ATGGGTTTTATGA-TGTTTAATTTCTTAACACTATAGTGTCTTGAGTACC  228

seq1  ATTTAGGGCTCTTCCTAAAAAAGGATCCACAATGTACTATTACTCACTAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGGGCTCTTCCTAAAAAAGGATCCACAATGTACTATTACTCACTAA  278

seq1  AATGAGTCAGGAATATTATTATGTTTTTTTAATTTACAAGATGGAGAAAT  349
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AATGAGTCAGGAATATTA-TATGTTTTTTTAATTTACAAGATGGAGAAAT  327

seq1  GCACTAAATCAGATTAGTTATACAATAAGACTTGTACTATAACTAGTATA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTAAATCAGATTAGTTATACAATAAGACTTGTACTATAACTAGTATA  377

seq1  TGGTTAATGATCAAACATTACTAAATTCAGTTATAATGATTAATATCAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTAATGATCAAACATTACTAAATTCAGTTATAATGATTAATATCAAA  427

seq1  TAATATTTAAATAGTGTCTCTTTTTTATTCAATATACCCAAGGATTCATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTTAAATAGTGTCTCTTTTTTATTCAATATACCCAAGGATTCATG  477

seq1  TGTTTGTTCATGTGTTCAGGCATGTGTTTACTCAGGTGTGTGTGTGTGTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCATGTGTTCAGGCATGTGTTTACTCAGGTGTGTGTGTGTGTG  527

seq1  TGTTTGTGTGTGTACTCATGTGTGTGTGTGTGTGCTCAGGTGTGTGTGCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTGTGTGTACTCATGTGTGTGTGTGTGTGCTCAGGTGTGTGTGCT  577

seq1  CAGGTATGTGTGTGTGCACTCAGGTGTGTGTGGCTGCCTGTGACAGCATG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATGTGTGTGTGCACTCAGGTGTGTGTGGCTGCCTGTGACAGCATG  627

seq1  TGTGTGTTTCTTTAAATATTTTTCATGGTAGTTATGAGCTCATTCTGCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTTTCTTTAAATATTTTTCATGGTAGTTATGAGCTCATTCTGCCC  677

seq1  ACCCCTTTCTTACAAGCATTACTATATAGTTTTTAAAATTTTTCTAAGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTTTCTTACAAGCATTACTATATAGTTTTTAAAATTTTTCTAAGAT  727

seq1  CCATAATCCTATTGAATCAGGAATAAAAACGTGTATTTAGTTTCAGGCAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAATCCTATTGAATCAGGAATAAAAACGTGTATTTAGTTTCAGGCAA  777

seq1  ACAATTGTTCAACAAAAGCCCCTTCAATTTTTAATTATTCCTACTTTCGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTGTTCAACAAAAGCCCCTTCAATTTTTAATTATTCCTACTTTCGT  827

seq1  CTCCAACTTCACCGTTATTCTCTGATTTTTAATCTTGAAAGCCAGTCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACTTCACCGTTATTCTCTGATTTTTAATCTTGAAAGCCAGTCAGG  877

seq1  GCACATTATTTATGTTACATTCAATGAGGAAAAAAAGAAGAAAAGGCATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTATTTATGTTACATTCAATGAGGAAAAAAAGAAGAAAAGGCATT  927

seq1  TTATTCAGGACACTAACACTAACCTTGAAATGTTATTTTCTGAACATTTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCAGGACACTAACACTAACCTTGAAATGTTATTTTCTGAACATTTG  977

seq1  TTCTGCTCACTGAGCAAATTTTAGTCTTCAAGTCAGATGTCTAAATACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCACTGAGCAAATTTTAGTCTTCAAGTCAGATGTCTAAATACAG  1027

seq1  TGCTTAAGCTCTGCTTAGAGGCTAAAAATATAGACTTCTGCACAAGGTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAGCTCTGCTTAGAGGCTAAAAATATAGACTTCTGCACAAGGTGA  1077

seq1  TGGTTACAAAGGAAGGTGTTTAGAATATGGTTCAATGGGAGCTAAGGTAA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTACAAAGGAAGGTGTTTAGAATATGGTTCAATGGGAGCTAAGGTAA  1127

seq1  TTGAACCTCAACTATACAGTTCAGCCAGAAGAATTC  1185
      ||||||||||||||||||||||||||||||||||||
seq2  TTGAACCTCAACTATACAGTTCAGCCAGAAGAATTC  1163

seq1: chr12_35337846_35337992
seq2: B6Ng01-056G16.g_72_218

seq1  TCCTAATGGTCGACTATAGGCTGAAAGGTAAGCCAAGTAAGTGTTTTCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGGTCGACTATAGGCTGAAAGGTAAGCCAAGTAAGTGTTTTCAT  50

seq1  ATTAAAAAGAAAGAAAGAAAAAGAAAGAAAGGAAGAAAGAAAAATGGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGAAAGAAAGAAAAAGAAAGAAAGGAAGAAAGAAAAATGGAAG  100

seq1  AAAAAGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGG  147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGGAAGGG  147