BAC Information

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BAC

Clone NameB6Ng01-058D03
Chromosome12 (Build37)
Map Location 20,421,830 - 20,552,288
singlet/doubletdoublet
Overlap geneLOC100043371, EG668455, LOC100042755
Upstream geneEG544848, EG627871, LOC100042698, LOC629055, EG668588, LOC100042706, EG668594, EG668600, LOC100042727, LOC673301, EG668605, LOC668614, LOC100042751
Downstream geneLOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257, Ddef2, Itgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058D03.bB6Ng01-058D03.g
ACCDH879840DH879841
length1,0971,116
definitionDH879840|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D03, 5' end.DH879841|Mus musculus domesticus DNA, BAC clone: B6Ng01-058D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,421,830 - 20,422,950)(20,551,161 - 20,552,288)
sequence
tggccgagacccttgaggactacaaggcgcccacggcctctagcttcacc
acgcgcacggcccagtgccgggacaccgtggaggccatcgaggaggtgag
cggtagcgtagcccgcgccgggcaggaggctagggtcgcggggatcgcgc
tgcgccctgggcacctgttaggcttccgcgcttggtgcccgatacccagt
gccctccggctgcgcccacacctgggaaaagtttctggtaccccaaagcc
ggacgcagccgggccagcagtgcccgacacagaagccctttggtccctgc
tctagggagaggctgcttggccaccttgggcctttttttgggaacgctcc
tctattcccatttccagcgcagggtttcaggttctttgctcccatcctcg
gagaggtcaacttcagctgcagagtctgtggcggcttcgagccggggacc
cctgcgagctctgcggcccgggagtgatgggtctccctgcgcggacctct
ccaacttgttccggaagtagcccggcggggggcagctgtggcttctgagc
caacatgtagagcagatccagggaccccaagctgcttaggcacgggtgcc
catcccatcttgggaggcctggcagtcccacaatgtgccacagagcagcg
ctgtagagggatgtggagaatggtatctttgaggtccaaaagttctttgg
tggccacttctgggctacctgtgtggtgcctgttgacagtatgatcagct
cctttgcccttaacctggggaagttatccacctggataactgcgtagtca
ttgtattgagtggctaagcagtgagctctccagaccctggggaagaggga
ctgcaagaataagcagttttggttgaaattgaagcagcttggaagaggct
gtgtgagtccagagactacggctgtcacagcttggaaagctcacttacat
cattttcttacctcccacagatttagagtttgtgtttcagctctgtagct
tgttgcgtcagctggacttccaaagtagctgagaacgagaccacatgtgt
agccgtatgacgatgactacatttctttggtcagattaagatcaagg
gaattcagaggacaacttgtggaagctggtcctcttttcctaccatgtgg
gacttagggatcgaacccaggctgccaggcttggtagcaagtacctttac
ccacagagtcagcccactggaccaaatacagagatggtttagagcatgga
gcaggaaggatgcagggtgcacataagctttgctcctgtgaagaactgac
tgctgacacatcctttactgtgtcattctgatttctataggaagccctat
agacagctaatgtgtgtgtatgctatacatgtgtgtgcagatgaacaccc
actcgtgcagaggccaaacaggaatcccggtgttcacaaggttccctttt
ctctatcactgaacccggccggggcttaccattgtagctaggctgcctgc
tcagcaagcttctgggactcacttgtcccctagttctagggtttcgggca
tgctcagccacttctgacttttccatgggtgttgggatcagaactcaggt
cctcatgatgggtatcaagtgttcttcaacactgagccattttcccagtt
cttgctttgacaattcttaatcacctatctgagcctcagatctcattaga
ggttaaaaaatataaaagacccgttttatagaattgtgtgaataaacctg
atggatgagctcagctggggcctgatgtccagcaagcaatcgatagatgc
ttggcttctattgttattctgtgcaaagacatgcagtcctttagtacacc
aagtagcaagtgggcagaggaaatacctggtgcatgggaccggggatggg
ggtcctggatgcctgcactccccatgtgccaggccctgtcaagtgcagta
cctgcactaactccagcatttcactgaagctgatgtagccattgctgtct
aggtcagacatgctgaaggcccacttcagcttctgttccagcttgccccg
gggaggtcaggctcagagcatgatgaccctcagaaggtgatagggccgtc
actgtggtgtcacatgtgtggaagacatgttcagtgaacttgaggttctc
tgtaagggagagttgcttaaatcttaaatagtcccagtcaggtggacagt
ggaagtcattgaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_20421830_20422950
seq2: B6Ng01-058D03.b_50_1146

seq1  TGGCCGAGACCCTTGAGGACTACAAGGCGCCCACGGCCTCTAGCTTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCGAGACCCTTGAGGACTACAAGGCGCCCACGGCCTCTAGCTTCACC  50

seq1  ACGCGCACGGCCCAGTGCCGGGACACCGTGGAGGCCATCGAGGAGGTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCACGGCCCAGTGCCGGGACACCGTGGAGGCCATCGAGGAGGTGAG  100

seq1  CGGTAGCGTAGCCCGCGCCGGGCAGGAGGCTAGGGTCGCGGGGATCGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTAGCGTAGCCCGCGCCGGGCAGGAGGCTAGGGTCGCGGGGATCGCGC  150

seq1  TGCGCCCTGGGCACCTGTTAGGCTTCCGCGCTTGGTGCCCGATACCCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCCTGGGCACCTGTTAGGCTTCCGCGCTTGGTGCCCGATACCCAGT  200

seq1  GCCCTCCGGCTGCGCCCACACCTGGGAAAAGTTTCTGGTACCCCAAAGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCCGGCTGCGCCCACACCTGGGAAAAGTTTCTGGTACCCCAAAGCC  250

seq1  GGACGCAGCCGGGCCAGCAGTGCCCGACACAGAAGCCCTTTGGTCCCTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGCAGCCGGGCCAGCAGTGCCCGACACAGAAGCCCTTTGGTCCCTGC  300

seq1  TCTAGGGAGAGGCTGCTTGGCCACCTTGGGCCTTTTTTTGGGAACGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGGAGAGGCTGCTTGGCCACCTTGGGCCTTTTTTTGGGAACGCTCC  350

seq1  TCTATTCCCATTTCCAGCGCAGGGTTTCAGGTTCTTTGCTCCCATCCTCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCCCATTTCCAGCGCAGGGTTTCAGGTTCTTTGCTCCCATCCTCG  400

seq1  GAGAGGTCAACTTCAGCTGCAGAGTCTGTGGCGGCTTCGAGCCGGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTCAACTTCAGCTGCAGAGTCTGTGGCGGCTTCGAGCCGGGGACC  450

seq1  CCTGCGAGCTCTGCGGCCCGGGAGTGATGGGTCTCCCTGCGCGGACCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCGAGCTCTGCGGCCCGGGAGTGATGGGTCTCCCTGCGCGGACCTCT  500

seq1  CCAACTTGTTCCGGAAGTAGCCCGGCGGGGGGCAGCTGTGGCTTCTGAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTGTTCCGGAAGTAGCCCGGCGGGGGGCAGCTGTGGCTTCTGAGC  550

seq1  CAACATGTAGAGCAGATCCAGGGACCCCAAGCTGCTTAGGCACGGGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACATGTAGAGCAGATCCAGGGACCCCAAGCTGCTTAGGCACGGGTGCC  600

seq1  CATCCCATCTTGGGAGGCCTGGCAGTCCCACAATGTGCCACAGAGCAGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCATCTTGGGAGGCCTGGCAGTCCCACAATGTGCCACAGAGCAGCG  650

seq1  CTGTAGAGGGATGTGGAGAATGGTATCTTTGAGGTCCAAAAGTTCTTTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGAGGGATGTGGAGAATGGTATCTTTGAGGTCCAAAAGTTCTTTGG  700

seq1  TGGCCACTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTATGATCAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTTCTGGGCTACCTGTGTGGTGCCTGTTGACAGTATGATCAGCT  750

seq1  CCTTTGCCCTTAACCTGGGGAAGTTATCCACCTGGATAACTGCGTAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCCCTTAACCTGGGGAAGTTATCCACCTGGATAACTGCGTAGTCA  800

seq1  TTGTATTGAGTGGCTAAGCAGTGAGCTCTCCAGACCCTGGGGAAGAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTGAGTGGCTAAGCAGTGAGCTCTCCAGACCCTGGGGAAGAGGGA  850

seq1  CTGCAAGAATAAGCAGTTTTGGTTGAAAATTGAAGCAGGCTTGGAAGAGG  900
      ||||||||||||||||||||||||| ||||||||||| ||||||||||||
seq2  CTGCAAGAATAAGCAGTTTTGGTTG-AAATTGAAGCA-GCTTGGAAGAGG  898

seq1  CTGTGTGAGTCCAGAGACTACGGCTGTCCACAGCTTGGGAAAGCCTCACT  950
      ||||||||||||||||||||||||||| |||||||| |||||| ||||||
seq2  CTGTGTGAGTCCAGAGACTACGGCTGT-CACAGCTT-GGAAAG-CTCACT  945

seq1  TACATCATTTTCTTTACCTCCCCAACAGAATTTAGAGTTTTGTGTTTTCA  1000
      |||||||||||| |||||||||  |||| |||||||| |||||| |||||
seq2  TACATCATTTTC-TTACCTCCC--ACAG-ATTTAGAG-TTTGTG-TTTCA  989

seq1  GCTCTGTAGGCTTTGTGCGTCCAGCTGGACTCACAAAAGGTAGCTGGAGA  1050
      |||||||| ||||  ||||| ||||||||||  ||||  |||||| ||||
seq2  GCTCTGTA-GCTTGTTGCGT-CAGCTGGACTTCCAAA--GTAGCT-GAGA  1034

seq1  ACGAGACACACATGTGTAGCAGTAGTGAACCGATGACTACATTTCTTTTG  1100
      ||||||| |||||||||||| ||| |||  ||||||||||||||| ||||
seq2  ACGAGAC-CACATGTGTAGCCGTA-TGA--CGATGACTACATTTC-TTTG  1079

seq1  GTCAGAATTTTAAGATCAAGG  1121
      ||||||   ||||||||||||
seq2  GTCAGA---TTAAGATCAAGG  1097

seq1: chr12_20551161_20552288
seq2: B6Ng01-058D03.g_68_1183 (reverse)

seq1  TCCCTCAATGACTGTCCCACTGTCCACCTGACTGTGGACTATTTTAAGAT  50
      ||||||||||||  | |||||||||||||||||| |||||| ||||||||
seq2  TCCCTCAATGAC--TTCCACTGTCCACCTGACTG-GGACTA-TTTAAGAT  46

seq1  CTAGGCCAACTTCTTCCCCTACAGAGACACCTCCAAGTTCACTGAACATG  100
       || | |||||   |||| |||||||| |||| |||||||||||||||||
seq2  TTAAG-CAACT--CTCCCTTACAGAGA-ACCT-CAAGTTCACTGAACATG  91

seq1  TCTTCCACACATGTGACACCAACAGTGACGGCACTATCAACTTCTGAGTG  150
      |||||||||||||||||||| ||||||||||| |||||| |||||||| |
seq2  TCTTCCACACATGTGACACC-ACAGTGACGGCCCTATCACCTTCTGAG-G  139

seq1  TTCATCATTGCTCTGAGCCTGACCT-CTCGGGGCAAGCTGGAACAGAAGC  199
       |||||| ||||||||||||||||| | ||||||||||||||||||||||
seq2  GTCATCA-TGCTCTGAGCCTGACCTCCCCGGGGCAAGCTGGAACAGAAGC  188

seq1  TGAAGTGGGCCTTCAGCATGTCTGACCTAGACAGCAATGGCTACATCAGC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTGGGCCTTCAGCATGTCTGACCTAGACAGCAATGGCTACATCAGC  238

seq1  TTCAGTGAAATGCTGGAGTTAGTGCAGGTACCTGCACTTGACAGGGCCTG  299
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTCAGTGAAATGCTGGAGTTAGTGCAGGTA-CTGCACTTGACAGGGCCTG  287

seq1  GCACATGGGGAGTGCAGGCATCCAGGACCCCCATCCCCGGTCCCATGCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATGGGGAGTGCAGGCATCCAGGACCCCCATCCCCGGTCCCATGCAC  337

seq1  CAGGTATTTCCTCTGCCCACTTGCTACTTGGTGTACTAAAGGACTGCATG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTATTTCCTCTGCCCACTTGCTACTTGGTGTACTAAAGGACTGCATG  387

seq1  TCTTTGCACAGAATAACAATAGAAGCCAAGCATCTATCGATTGCTTGCTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGCACAGAATAACAATAGAAGCCAAGCATCTATCGATTGCTTGCTG  437

seq1  GACATCAGGCCCCAGCTGAGCTCATCCATCAGGTTTATTCACACAATTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCAGGCCCCAGCTGAGCTCATCCATCAGGTTTATTCACACAATTCT  487

seq1  ATAAAACGGGTCTTTTATATTTTTTAACCTCTAATGAGATCTGAGGCTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAACGGGTCTTTTATATTTTTTAACCTCTAATGAGATCTGAGGCTCA  537

seq1  GATAGGTGATTAAGAATTGTCAAAGCAAGAACTGGGAAAATGGCTCAGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGTGATTAAGAATTGTCAAAGCAAGAACTGGGAAAATGGCTCAGTG  587

seq1  TTGAAGAACACTTGATACCCATCATGAGGACCTGAGTTCTGATCCCAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGAACACTTGATACCCATCATGAGGACCTGAGTTCTGATCCCAACA  637

seq1  CCCATGGAAAAGTCAGAAGTGGCTGAGCATGCCCGAAACCCTAGAACTAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAAAAGTCAGAAGTGGCTGAGCATGCCCGAAACCCTAGAACTAG  687

seq1  GGGACAAGTGAGTCCCAGAAGCTTGCTGAGCAGGCAGCCTAGCTACAATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACAAGTGAGTCCCAGAAGCTTGCTGAGCAGGCAGCCTAGCTACAATG  737

seq1  GTAAGCCCCGGCCGGGTTCAGTGATAGAGAAAAGGGAACCTTGTGAACAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCCCCGGCCGGGTTCAGTGATAGAGAAAAGGGAACCTTGTGAACAC  787

seq1  CGGGATTCCTGTTTGGCCTCTGCACGAGTGGGTGTTCATCTGCACACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATTCCTGTTTGGCCTCTGCACGAGTGGGTGTTCATCTGCACACACA  837

seq1  TGTATAGCATACACACACATTAGCTGTCTATAGGGCTTCCTATAGAAATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATAGCATACACACACATTAGCTGTCTATAGGGCTTCCTATAGAAATC  887

seq1  AGAATGACACAGTAAAGGATGTGTCAGCAGTCAGTTCTTCACAGGAGCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGACACAGTAAAGGATGTGTCAGCAGTCAGTTCTTCACAGGAGCAA  937

seq1  AGCTTATGTGCACCCTGCATCCTTCCTGCTCCATGCTCTAAACCATCTCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTATGTGCACCCTGCATCCTTCCTGCTCCATGCTCTAAACCATCTCT  987

seq1  GTATTTGGTCCAGTGGGCTGACTCTGTGGGTAAAGGTACTTGCTACCAAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGGTCCAGTGGGCTGACTCTGTGGGTAAAGGTACTTGCTACCAAG  1037

seq1  CCTGGCAGCCTGGGTTCGATCCCTAAGTCCCACATGGTAGGAAAAGAGGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGCCTGGGTTCGATCCCTAAGTCCCACATGGTAGGAAAAGAGGA  1087

seq1  CCAGCTTCCACAAGTTGTCCTCTGAATTC  1128
      |||||||||||||||||||||||||||||
seq2  CCAGCTTCCACAAGTTGTCCTCTGAATTC  1116