BAC Information

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BAC

Clone NameB6Ng01-058F07
Chromosome12 (Build37)
Map Location 36,226,538 - 36,227,818
singlet/doubletsinglet
Overlap genenone
Upstream gene4921508M14Rik, Prps1l1, Snx13, Ahr
Downstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058F07.bB6Ng01-058F07.g
ACCDH879939DH879940
length1,2311,060
definitionDH879939|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F07, 5' end.DH879940|Mus musculus domesticus DNA, BAC clone: B6Ng01-058F07, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccactggaatgcttgattgcgggataatgtaaagtgaaacctgtg
actcttttggggtacccttgaagagttctgggtgaaaggctgacttcagc
gaaaatggcactgacagaaccatgtagcaaatggaagttagtgtcagaca
gcatgctgccccaaccgcttggattcatttttcaaatttgtcttttgggt
tagtattaaaaagttgacattcctatagaattttccccaattagaattag
atgtaaacatgttctacacattatatcagtacaggaagtagcctcagatg
aaacaggtgatatttgagacagtttgttcagtgtactaactgactagaag
taggctgtgctttacaggcacaaaactatcgttattgtcaaagccctcat
tttaaatcattctaaagaagcaaaagtcatggcaacagctgaaagttcaa
acgtctgattccaaagacaaacgtgagaagactgactcctcaggcagtta
ggaggagggacttaaagcccattcccacagtgacatacttcctccaacaa
ggccacacctactccaacaaagccacacctcctaatagtgccagtccttg
ggccaagcatattcaaaccatggcactaagagaatttaagtttgaaactt
tacatattatcctcctattatgcatgattaaaatacaagagaatttaata
tctcagctgtttttgtaggcatttgtgtgtgtgtgtgtgtggtcagcaga
cagcatacattaaaataaagagaaagctaaaaagattaccatttggtagc
tttcactggcagaaagaaagccactaatgcagcctgtgataatgtccttt
ccccttttaataaggaggcttgtatagtgctgacataaaaggattaaaca
gcaagcctgctgagaaaatgctcaaaggtattaaaccctggcagtgtggt
ttaactgtaagtactgtagaatgagatacgtccagtttggatgagaagta
gtttgacagagactacaggtaacaatattcatagagctgaattaatgctt
catgaaaatatattagcaaagatttgaaatatgtctcctttgcaatgctt
caagagtaatcagagctgcgaactatggagggaagaacttggtcaaggcc
gaatcctgactcagctgtgcgtcatacagcttcttcttcagagaagtttc
aagcttgacctggttgatatggccatgtatc

gaattcttctgtttgagaaactttgtttaagaagttctggtttcttttat
cagtattaattagtattggtattggtaatggtattaggagccaagatctg
gatgttagacatactcatcattacaagggaatctttgcttctagttccct
agctagcaaatgaaacttatgtatgtatatataatatcaaacagaatcat
acgtacagtcatagatatatcaggtaggaaaatactatacacaaatgcct
ctatctctctcttaccagatgaatcatttctggctcttcacttacttatc
tgtaactcctacctccagcagtgagaaggatggtttccatcattcaccaa
cagctaattatcccgtgcaagtctagatgtagcatgctttctctcatcca
taggaaacagctgcatcagctagcaggtgctgcctatgccaccttaatct
taagtcatttccaaagttaatttgatcatcaattttgccttaatattttt
tgctgagattgatttgtacatttcttacattttgatgcttttgtcacatt
cttcatttaatcctaatgatataatttttacatttgaaattaactttttg
gggaattttgagtttttgtacatgacttatttataatgacctcctccaac
tctttctagattcaccttagctttctctacccatcaaacattgtgtctta
aaaaaaaaaaaaaaaaactcaagaccaattagtatatccctaaatatttt
tggatgtgtggtcttctgctggaggctagtcaacttaccaggggctatat
tcttagggaaaactgaaagctaacattttgccatttttttttcgcatgtg
ctcaacttcccccttccattctgggatttggtctcgacttggcttgcaca
ggctttgtgatgttgtctcaacatcatgtatccattatgaacagctgctt
tgctgtgtctagagtgttcctgtatcatccatccctggctcttatccttt
tcctcctctccaaacgctgttcctgacccttggagtgacaagtggtaatt
atttccttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36226538_36227818
seq2: B6Ng01-058F07.b_49_1279

seq1  GAATTCCACTGGAATGCTTGATTGCGGGATAATGTAAAGTGAAACCTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGGAATGCTTGATTGCGGGATAATGTAAAGTGAAACCTGTG  50

seq1  ACTCTTTTGGGGTACCCTTGAAGAGTTCTGGGTGAAAGGCTGACTTCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTTTGGGGTACCCTTGAAGAGTTCTGGGTGAAAGGCTGACTTCAGC  100

seq1  GAAAATGGCACTGACAGAACCATGTAGCAAATGGAAGTTAGTGTCAGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGCACTGACAGAACCATGTAGCAAATGGAAGTTAGTGTCAGACA  150

seq1  GCATGCTGCCCCAACCGCTTGGATTCATTTTTCAAATTTGTCTTTTGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCTGCCCCAACCGCTTGGATTCATTTTTCAAATTTGTCTTTTGGGT  200

seq1  TAGTATTAAAAAGTTGACATTCCTATAGAATTTTCCCCAATTAGAATTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTAAAAAGTTGACATTCCTATAGAATTTTCCCCAATTAGAATTAG  250

seq1  ATGTAAACATGTTCTACACATTATATCAGTACAGGAAGTAGCCTCAGATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAACATGTTCTACACATTATATCAGTACAGGAAGTAGCCTCAGATG  300

seq1  AAACAGGTGATATTTGAGACAGTTTGTTCAGTGTACTAACTGACTAGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGTGATATTTGAGACAGTTTGTTCAGTGTACTAACTGACTAGAAG  350

seq1  TAGGCTGTGCTTTACAGGCACAAAACTATCGTTATTGTCAAAGCCCTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGTGCTTTACAGGCACAAAACTATCGTTATTGTCAAAGCCCTCAT  400

seq1  TTTAAATCATTCTAAAGAAGCAAAAGTCATGGCAACAGCTGAAAGTTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATCATTCTAAAGAAGCAAAAGTCATGGCAACAGCTGAAAGTTCAA  450

seq1  ACGTCTGATTCCAAAGACAAACGTGAGAAGACTGACTCCTCAGGCAGTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGATTCCAAAGACAAACGTGAGAAGACTGACTCCTCAGGCAGTTA  500

seq1  GGAGGAGGGACTTAAAGCCCATTCCCACAGTGACATACTTCCTCCAACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGGACTTAAAGCCCATTCCCACAGTGACATACTTCCTCCAACAA  550

seq1  GGCCACACCTACTCCAACAAAGCCACACCTCCTAATAGTGCCAGTCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACACCTACTCCAACAAAGCCACACCTCCTAATAGTGCCAGTCCTTG  600

seq1  GGCCAAGCATATTCAAACCATGGCACTAAGAGAATTTAAGTTTGAAACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCATATTCAAACCATGGCACTAAGAGAATTTAAGTTTGAAACTT  650

seq1  TACATATTATCCTCCTATTATGCATGATTAAAATACAAGAGAATTTAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATTATCCTCCTATTATGCATGATTAAAATACAAGAGAATTTAATA  700

seq1  TCTCAGCTG-TTTTGTAGGCATTTGTGTGTGTGTGTGTGTGGTCAGCAGA  749
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCTGTTTTTGTAGGCATTTGTGTGTGTGTGTGTGTGGTCAGCAGA  750

seq1  CAGCATACATTAAAATAAAGAGAAAGCTAAAAAGATTACCATTTGGTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATACATTAAAATAAAGAGAAAGCTAAAAAGATTACCATTTGGTAGC  800

seq1  TTTCACTGGCAGAAAGAAAGCCACTAATGCAGCCTGTGATAATGTCCTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGCAGAAAGAAAGCCACTAATGCAGCCTGTGATAATGTCCTTT  850

seq1  CCCCCTTTTAATAAGGAGGCTTGTATAGTGCTGACATTAAAAGGATTAAA  899
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  -CCCCTTTTAATAAGGAGGCTTGTATAGTGCTGACA-TAAAAGGATTAAA  898

seq1  CAGCAAGCCTGCTGAGAAAAATGCTCAAAGGTATTAAACCCTGGCAGTGT  949
      |||||||||||||||| |||||||||||||||||||||||||||||||| 
seq2  CAGCAAGCCTGCTGAG-AAAATGCTCAAAGGTATTAAACCCTGGCAGTG-  946

seq1  TGGTTTAACTGTAAGTACTGTAGAATGAGATTACGTCCAAGTTTGGAAGG  999
      |||||||||||||||||||||||||||||| ||||||| ||||||| | |
seq2  TGGTTTAACTGTAAGTACTGTAGAATGAGA-TACGTCC-AGTTTGG-ATG  993

seq1  AGAAGTAGGTTTGACAGAAGACTAACAGGTAACAATATTCATAGAAGCCT  1049
      ||||||| ||||||||| ||||| |||||||||||||||||||||   ||
seq2  AGAAGTA-GTTTGACAG-AGACT-ACAGGTAACAATATTCATAGA--GCT  1038

seq1  GAATTAATGCTTCAGTGAAAAATATAATTAGCACAAGATTTGAAAATATG  1099
      |||||||||||||| || ||||||| ||||||| |||||||| |||||||
seq2  GAATTAATGCTTCA-TG-AAAATAT-ATTAGCA-AAGATTTG-AAATATG  1083

seq1  TCTCCTTTGGCAAATGTCTCAAGAGTAATCAGAGCTGCAGACTGATGGAG  1149
      |||||||||   ||||  ||||||||||||||||||||  ||| ||||||
seq2  TCTCCTTTG--CAATGCTTCAAGAGTAATCAGAGCTGCGAACT-ATGGAG  1130

seq1  TGGAAGGAGCACTGGGCAAAGGGCCAGAGTCGCAGAGTTCAAGCTTGTTG  1199
       |||   || ||| ||  ||||  | || || | || |   ||||   ||
seq2  -GGA---AGAACTTGGTCAAGG--CCGAATC-CTGACT--CAGCT--GTG  1169

seq1  CTGTACATCCAGCTTTACTTCCTCAGAAGAGAAATGTCCCAAGTCCTTGA  1249
      | || ||| ||||||  |||| ||   ||||||  ||  ||||  |||||
seq2  C-GT-CATACAGCTT--CTTCTTC---AGAGAA--GTTTCAAG--CTTGA  1208

seq1  ATCTTTGGATGATGGATATGGCCAATTGTATC  1281
               || | ||||||||||  ||||||
seq2  -------CCTGGTTGATATGGCCA--TGTATC  1231


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