BAC Information

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BAC

Clone NameB6Ng01-058H06
Chromosome12 (Build37)
Map Location 115,536,074 - 115,692,491
singlet/doubletdoublet
Overlap geneIgh, EG636260, Ighv3-7, Ighv5-21, Ighv3-8, Ighv8-1, Ighv1-1, Ighv13-2, EG435321, Ighv6-3, EG628398, EG639510, Ighv6-6
Upstream geneIgh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1, Ighv7-2, Ighv14-1, Ighv4-1, Ighv3-1, Ighv11-1, Ighv14-2, Ighv4-2, Ighv3-2, Ighv11-2, Ighv14-3, EG629812, Ighv6-2, Ighv9-1, Ighv12-1, EG629818, Ighv12-2, Ighv9-3, Ighv7-3, Ighv15-1, Ighv14-4, EG668438, Ighv7-4, EG629833, EG633457, Ighv13-1, Ighv3-6
Downstream geneEG432701, EG629849, Ighv1-2, Ighv10-1, Ighv1-3, Ighv1-4, Ighv10-2, EG668469, EG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058H06.bB6Ng01-058H06.g
ACCDH880026DH880027
length1,105958
definitionDH880026|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H06, 5' end.DH880027|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,536,074 - 115,537,187)(115,691,916 - 115,692,491)
sequence
gaattcaatggaagacatttgacaacaaagtggatgtagggatgtagtct
gaccttctcccccagttagcaattcccttacatatgtaatagactgggct
gagactattttaacctaaaattataattgaatttaatagttatttcaatg
gaaatacttggtaatgtgatacactgaaattataacaatttaataaactg
taaccaaaaggaatttgtggaaaaactaacttatcacactttcctcttaa
tgaaaaaaaggtgacaaaatcaatcaaaaattataaaatgaatatacacc
ttgattcagttcaaagtcataaagaaaattacaacagtatgtgtatcaca
tctctgccacacacatcactctttccatttcatgtacaagactcttgctg
tgaatcaaacatgaaaacaatccaaagaaatattcagtttatgctatgaa
atactaagatctaggtgaactcataatatataaaaaagtaactaccttga
atagaaattgctatctcttcctgaaaactcctatcattaaaggctatagc
aagaggagctgtgattctactggtcatggggtctgaatacttaactatca
gtttatggtcacagggaacctctacatacagcttgcatgtaacttttgtc
acagctacctactgctttttaaagtattttatctcctatctgttagagca
tcaaagaggcgattctactgatgaaaactgggatagtctgatagctaatg
ggaagaaagtgcttaggactaactaaccttatctcacagatattgaagtg
tgccctccagttcctgttgccattttaatgttttgatatacagaatgaac
atcaaccaagtcagagtaaaattcctcaagatatacgatggatttgcatg
agcctttgtgaatgaaactagacaataggaacagagagtgtttcacgaac
accatagttcatttgcagattccacatgatttcttgtcacttctgtcctc
gctgctctagattcagatgccagtccacatcagaggagcgggggtctctc
cttcccaattcaagttggatgcatcactattcccaaggactgagtcatga
atatg
gaattctagatccatcaaaattacagagagaaaccctgtcatgaaaaatc
attctatcacttaatgcatcaactgatataatattttaaattgtatatgt
tttgatattataacattataacatacattaaatatgtcactgcatttcct
tttttccctcaaaccatctcagatatatttccttgttctatttcaaattc
atgacctcttattctataactgctgttacatatatatttctgtcttagat
aagttttttttcctacaaaaacgcagcattatgaaggcaacgtttataaa
gtgatacatgtgactgatcatggcttaaagtttcagactttctgtctatt
agcataatggagggaaacatggcagcattcagacattcacggtattttag
aaggagatgagcattatacatcttgacctaaaagccactaggagacatct
gtctcttctgcacctgtagaaacttgagcaataggagacctcaaagcctg
cctgcacagtgacacacttcctctaacaaggccacacttattctaacaag
gcaacatctcctaatagtgtcacttcccatgggccaagtatattcaaaat
aaaacaattgctaagtagttacaaaaactagatcagtctgtcattctgta
aaatgttacttgtgtgaatgattttagggcttacctgtatatactggata
atcaaatggtgtcctttttcatgggatggggctacctatttcacttacac
ttagaatctgtctgcttcctgtgattgccttctagtagtgttggagcatg
gctgacttcccctcacctactacgtattgtctgttgttgtctttgtttgg
gtagtattggtgagtctgtattgcacattatagctgaactacatttgaat
taagtaaaatcccaccaacaagcatacccaggaaataagttttcttagtt
acctgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_115536074_115537187
seq2: B6Ng01-058H06.b_45_1149

seq1  GAATTCAATGGAAGACATTTGACAACAAAGTGGATGTAGGGATGTAGTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGGAAGACATTTGACAACAAAGTGGATGTAGGGATGTAGTCT  50

seq1  GACCTTCTCCCCCAGTTAGCAATTCCCTTACATATGTAATAGACTGGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTCCCCCAGTTAGCAATTCCCTTACATATGTAATAGACTGGGCT  100

seq1  GAGACTATTTTAACCTAAAATTATAATTGAATTTAATAGTTATTTCAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTATTTTAACCTAAAATTATAATTGAATTTAATAGTTATTTCAATG  150

seq1  GAAATACTTGGTAATGTGATACACTGAAATTATAACAATTTAATAAACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATACTTGGTAATGTGATACACTGAAATTATAACAATTTAATAAACTG  200

seq1  TAACCAAAAGGAATTTGTGGAAAAACTAACTTATCACACTTTCCTCTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAAAAGGAATTTGTGGAAAAACTAACTTATCACACTTTCCTCTTAA  250

seq1  TGAAAAAAAGGTGACAAAATCAATCAAAAATTATAAAATGAATATACACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAAAAGGTGACAAAATCAATCAAAAATTATAAAATGAATATACACC  300

seq1  TTGATTCAGTTCAAAGTCATAAAGAAAATTACAACAGTATGTGTATCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTCAGTTCAAAGTCATAAAGAAAATTACAACAGTATGTGTATCACA  350

seq1  TCTCTGCCACACACATCACTCTTTCCATTTCATGTACAAGACTCTTGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCACACACATCACTCTTTCCATTTCATGTACAAGACTCTTGCTG  400

seq1  TGAATCAAACATGAAAACAATCCAAAGAAATATTCAGTTTATGCTATGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAACATGAAAACAATCCAAAGAAATATTCAGTTTATGCTATGAA  450

seq1  ATACTAAGATCTAGGTGAACTCATAATATATAAAAAAGTAACTACCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAAGATCTAGGTGAACTCATAATATATAAAAAAGTAACTACCTTGA  500

seq1  ATAGAAATTGCTATCTCTTCCTGAAAACTCCTATCATTAAAGGCTATAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATTGCTATCTCTTCCTGAAAACTCCTATCATTAAAGGCTATAGC  550

seq1  AAGAGGAGCTGTGATTCTACTGGTCATGGGGTCTGAATACTTAACTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGCTGTGATTCTACTGGTCATGGGGTCTGAATACTTAACTATCA  600

seq1  GTTTATGGTCACAGGGAACCTCTACATACAGCTTGCATGTAACTTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGGTCACAGGGAACCTCTACATACAGCTTGCATGTAACTTTTGTC  650

seq1  ACAGCTACCTACTGCTTTTTAAAGTATTTTATCTCCTATCTGTTAGAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTACCTACTGCTTTTTAAAGTATTTTATCTCCTATCTGTTAGAGCA  700

seq1  TCAAAGAGGCGATTCTACTGATGAAAACTGGGATAGTCTGATAGCTAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGGCGATTCTACTGATGAAAACTGGGATAGTCTGATAGCTAATG  750

seq1  GGAAGAAAGTGCTTAGGACTAACTAACCTTATCTCACAGATATTGAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAGTGCTTAGGACTAACTAACCTTATCTCACAGATATTGAAGTG  800

seq1  TGCCCTCCAGTTCCTGTTGCCATTTTAATGTTTTGATATACAGAATGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTCCAGTTCCTGTTGCCATTTTAATGTTTTGATATACAGAATGAAC  850

seq1  ATCAACCAAGTCAGAGTAAAATTCCTCAAGATATACGATGGATTTGCATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACCAAGTCAGAGTAAAATTCCTCAAGATATACGATGGATTTGCATG  900

seq1  AGCCTTTGTGAATGAAACTAGACAATAGGAACAGAGAGTGTTTCAAGGAA  950
      |||||||||||||||||||||||||||||||||||||||||||| | |||
seq2  AGCCTTTGTGAATGAAACTAGACAATAGGAACAGAGAGTGTTTC-ACGAA  949

seq1  CACCATAGTTCATTTGCAGATTCCAACATGATTTCTTGTCACTTCTGTCC  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CACCATAGTTCATTTGCAGATTCC-ACATGATTTCTTGTCACTTCTGTCC  998

seq1  TCGCTGCTCTAGAATTCAGATGCCAGGTCCACATCAGAGGAAGCGGGTGT  1050
      |||||||||||| |||||||||||| |||||||||||||| |||||| ||
seq2  TCGCTGCTCTAG-ATTCAGATGCCA-GTCCACATCAGAGG-AGCGGGGGT  1045

seq1  CTCT-CTTCCCAATTTCAAAGTTGGATGCAATCACATATCCCAAGGACTG  1099
      |||| ||||||||||   ||||||||||| |||||   ||||||||||||
seq2  CTCTCCTTCCCAATT--CAAGTTGGATGC-ATCACTATTCCCAAGGACTG  1092

seq1  AAGGTCATGATTATG  1114
      |  ||||||| ||||
seq2  A--GTCATGAATATG  1105

seq1: chr12_115691916_115692491
seq2: B6Ng01-058H06.g_70_645 (reverse)

seq1  GAAGTGACACTATTAGGAGATGTTGCCTTGTTAGAATAAGTGTGGCCTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGACACTATTAGGAGATGTTGCCTTGTTAGAATAAGTGTGGCCTTG  50

seq1  TTAGAGGAAGTGTGTCACTGTGCAGGCAGGCTTTGAGGTCTCCTATTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGGAAGTGTGTCACTGTGCAGGCAGGCTTTGAGGTCTCCTATTGCT  100

seq1  CAAGTTTCTACAGGTGCAGAAGAGACAGATGTCTCCTAGTGGCTTTTAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTCTACAGGTGCAGAAGAGACAGATGTCTCCTAGTGGCTTTTAGG  150

seq1  TCAAGATGTATAATGCTCATCTCCTTCTAAAATACCGTGAATGTCTGAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGATGTATAATGCTCATCTCCTTCTAAAATACCGTGAATGTCTGAAT  200

seq1  GCTGCCATGTTTCCCTCCATTATGCTAATAGACAGAAAGTCTGAAACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCATGTTTCCCTCCATTATGCTAATAGACAGAAAGTCTGAAACTTT  250

seq1  AAGCCATGATCAGTCACATGTATCACTTTATAAACGTTGCCTTCATAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGATCAGTCACATGTATCACTTTATAAACGTTGCCTTCATAATG  300

seq1  CTGCGTTTTTGTAGGAAAAAAAACTTATCTAAGACAGAAATATATATGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTTTTTGTAGGAAAAAAAACTTATCTAAGACAGAAATATATATGTA  350

seq1  ACAGCAGTTATAGAATAAGAGGTCATGAATTTGAAATAGAACAAGGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGTTATAGAATAAGAGGTCATGAATTTGAAATAGAACAAGGAAAT  400

seq1  ATATCTGAGATGGTTTGAGGGAAAAAAGGAAATGCAGTGACATATTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGAGATGGTTTGAGGGAAAAAAGGAAATGCAGTGACATATTTAAT  450

seq1  GTATGTTATAATGTTATAATATCAAAACATATACAATTTAAAATATTATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTATAATGTTATAATATCAAAACATATACAATTTAAAATATTATA  500

seq1  TCAGTTGATGCATTAAGTGATAGAATGATTTTTCATGACAGGGTTTCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTGATGCATTAAGTGATAGAATGATTTTTCATGACAGGGTTTCTCT  550

seq1  CTGTAATTTTGATGGATCTAGAATTC  576
      ||||||||||||||||||||||||||
seq2  CTGTAATTTTGATGGATCTAGAATTC  576