BAC Information

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BAC

Clone NameB6Ng01-058H12
Chromosome12 (Build37)
Map Location 64,799,471 - 64,799,791
singlet/doubletsinglet
Overlap genenone
Upstream geneTspyl-ps, EG665741, EG382606
Downstream geneLOC435302, EG623046
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058H12.b
ACCDH880038
length658
definitionDH880038|Mus musculus domesticus DNA, BAC clone: B6Ng01-058H12, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgaatttcttagaccctggatggatctggatgatatgttccta
agtgagataactcaaaccccaacaaaagcacatgatatatactcactgat
aagtggatattatccttgaagctcataaaaaaacaaggtaaaatttgcaa
aacccatgaaactcaacatgaaggaagaccaaagtgtggatatgttgttc
cttcttagaattgggaacaaaagatccatggaaagagttacagagaaaaa
gtttggaactaagactgaaggaatccagaccctgcttcattctgtgatcc
ataccatagacaacctccaaacccatatactgttgaacagccaaacaaga
gcttatggacagaagactgatatagatgtctcctgagacgatctgccatt
tcctgacaaatactgaattggatgctcaaagaaatccattggtctgaaca
cacggtccctaagtatggagctagagaaagtacaccaggaacattctatg
aggaaaaacaactaacaagtactcccagagttccctgagattaaatctcc
aatcaaagtaaacataagttgtgacttatgcctacagctgcatatgtagc
agatgatggactagtatgtcatcaatgggaggagagacacttgttcttgt
aaagttac
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_64799471_64799791
seq2: B6Ng01-058H12.b_113_639 (reverse)

seq1  TACATATGCAGCT-------------------------------------  13
      |||||||||||||                                     
seq2  TACATATGCAGCTGTAGGCATAAGTCACAACTTATGTTTACTTTGATTGG  50

seq1  AGAGTCAA-------GAGCTCCGGG-GTACTGGTTAGTTCATAATGTTGT  55
      ||| | ||       || ||| ||| ||||| ||||||      |||| |
seq2  AGATTTAATCTCAGGGAACTCTGGGAGTACTTGTTAGT------TGTTTT  94

seq1  TGCACATACAGGGTTGCAGATCTCATTAGCTCCTTGGATACTTTCTCTAG  105
      | | |||| |  ||                |||| |  ||||||||||||
seq2  TCCTCATAGAATGT----------------TCCTGGTGTACTTTCTCTAG  128

seq1  CTCCTCCATTGGGGGCCCTGTGATCCATCCACTGTGAGCTGACTGTGAGC  155
      ||||    || ||| || |||| ||   ||| ||   | |  || |||||
seq2  CTCCATACTTAGGGACCGTGTGTTCAGACCAATG---GATTTCTTTGAGC  175

seq1  ATCCACTTCTGTGTTTGATAGGCCCAGCCTAGTC-TCACAAGAGACAGCT  204
      ||||| ||| || ||||  |||    | |   || || || |||||| ||
seq2  ATCCAATTCAGTATTTGTCAGGAAATGGCAGATCGTCTCAGGAGACATCT  225

seq1  ATATCATGGTCCTTGCAACAAACGCTTACTAGTGTATGCAATGGTGTCAG  254
      ||||||   | ||  | | || | |||  | |  | | |||  || |  |
seq2  ATATCAGTCTTCTGTCCATAAGCTCTTGTTTGGCTGTTCAACAGTATATG  275

seq1  TGTTTGGAGGCTGATTATGGGCT---------AAT-ATCCA----CT---  287
       ||||||||| ||  |||||  |         ||| |  ||    ||   
seq2  GGTTTGGAGGTTGTCTATGGTATGGATCACAGAATGAAGCAGGGTCTGGA  325

seq1  ---TATCAG--TGAGTACATATCATT-------TGACT-----------T  314
           ||||  | ||| |  | | ||       | |||           |
seq2  TTCCTTCAGTCTTAGTTCCAAACTTTTTCTCTGTAACTCTTTCCATGGAT  375

seq1  CTTTTGT-------------------------------------------  321
      |||||||                                           
seq2  CTTTTGTTCCCAATTCTAAGAAGGAACAACATATCCACACTTTGGTCTTC  425

seq1  --------------------------------------------------  321
                                                        
seq2  CTTCATGTTGAGTTTCATGGGTTTTGCAAATTTTACCTTGTTTTTTTATG  475

seq1  --------------------------------------------------  321
                                                        
seq2  AGCTTCAAGGATAATATCCACTTATCAGTGAGTATATATCATGTGCTTTT  525

seq1  --  321
        
seq2  GT  527