BAC Information

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BAC

Clone NameB6Ng01-058P15
Chromosome12 (Build37)
Map Location 21,222,479 - 21,223,604
singlet/doubletsinglet
Overlap geneDdef2
Upstream geneLOC668614, LOC100042751, LOC100043371, EG668455, LOC100042755, LOC100043377, LOC625810, 1700030C10Rik, 3110053B16Rik, LOC668698, LOC546752, EG629257
Downstream geneItgb1bp1, Cpsf3, Iah1, Adam17, Ywhaq, LOC100043407, LOC100042796, 6030426L16Rik, LOC434693, EG668645, EG668646, LOC100043416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058P15.bB6Ng01-058P15.g
ACCDH880406DH880407
length1,1071,170
definitionDH880406|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P15, 5' end.DH880407|Mus musculus domesticus DNA, BAC clone: B6Ng01-058P15, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccatcccagcacttccatctccccctagaccatcagtacttctaa
actggctttaatatgccaccttggaagtgctggattttaatttggaccct
ggcaatggctaggggatcctgtggtgttgaagccttgagaaggaaggttc
tacaatatattgagaaagatcactgcttgccgcatgggcaaaagaaaaag
aaagccatttggcctttctacctcagtttctttcttggacaacaggaaac
actctataagacagtaaatgtgctaaggatacatacagccacatatgtaa
aacacctggtacataagagcattggtcaaatattccccagctcgcctcat
caacctcatggtgtgcacacacgtgtgggaggtgggtgtcactgttccta
attgttctaacgctgactaagcacaccacaagagcagaaggcatgcatgt
gctcagctgagactcacagcatatatgcaccgaatgacaaactctagtac
tagagtttctcagagcaagaaccagtgggaagtctccagaacccaggcca
gtgccagtcctgacaggcccccatcccacactgagtacaaggagtgacca
gccagtactggattccagcagacctatgggagtaagctggaagatcccac
taacagctcacaactaggcaagagccaagaccttttgtgtttattgtgga
ttctgtcacactggttctcttctcctgaggaagcagttgtgatgatatga
agagctttgcgtaaggggcagagcctctcaaagccagagcagagtgtaga
aaagaagataagtccctatgccgccctccttccaccagccacactggaag
acccagagactagggacaacttccttctaggtgtcaagcagcagctgatc
actcccaagaaagcaaaggcgttggccagacaatgaagagactaatatat
gacattcaacgtaatccaagctcaccaaagattaaaaacacctagaatgg
aggaccaagtgcattctgcagaagcctgaagagttctctcaaagtctttt
taaacacaaacaaacaacatcaaagatcaagcagggagttagaagtcaga
aacaaga
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcaatctggtggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgtcccaaccggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaaatacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatttacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaact
taggatacccaagatataagatacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtatggacactatgcccctctttagaattgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagacga
aaggatggaccatctagagactgccatatccagggatccaccccataatc
agctttcaaacgctgacaccatttgcatacactagcaagattttgttgaa
aggacccagatgtagctgtctcttgtgagattatgccggggcctagctaa
cacaaaagtggatgctcaccgtcagctattggatggatcacaggactccc
aatggagagctagagaaagtacccaaggagctaaaggatctgcaacccta
taggtgacaacattatgaactaccagtacccgagctcttgactctagctg
catatgtatcaaagatggcctatcagccatcctggaaagaagccaatgga
caccaactgttattgccccagttcggaacgctaggccaaaaagggaatgg
ggtagatgagaatgggggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_21222479_21223604
seq2: B6Ng01-058P15.b_43_1149 (reverse)

seq1  TCTTGTCTCTTGACTTCTAACTCCCTTGCCTTGAATCTTTGTTTGTTTGT  50
      |||||| || ||||||||||||||||   |||| ||||||| |   ||||
seq2  TCTTGTTTC-TGACTTCTAACTCCCT--GCTTG-ATCTTTGAT--GTTGT  44

seq1  TTGTTTTGTTGTTTTTTAAAAAGACCTTTGAGAG-ACTCTTCCAGGCTTT  99
      ||||||      | |||||||||| ||||||||| |||||| ||||| ||
seq2  TTGTTT-----GTGTTTAAAAAGA-CTTTGAGAGAACTCTT-CAGGC-TT  86

seq1  CTGCAGAATGCACTTTTGGTCCCTCCATTCTTGGGTGTTTTTAATTCTTT  149
      |||||||||||||  ||||| ||||||||| | ||||||||||| |||||
seq2  CTGCAGAATGCAC--TTGGT-CCTCCATTC-TAGGTGTTTTTAA-TCTTT  131

seq1  GTTGGGCTTGGATTACGTTGACTGTCATATATTAGTCTCTTCATTGTCTG  199
      | || |||||||||||||||| ||||||||||||||||||||||||||||
seq2  GGTGAGCTTGGATTACGTTGAATGTCATATATTAGTCTCTTCATTGTCTG  181

seq1  GCCACTGCCTTTGCTTTCTTGGGAGTGATCAGCTGCTGCTTGACACCTAG  249
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGCCTTTGCTTTCTTGGGAGTGATCAGCTGCTGCTTGACACCTAG  231

seq1  AAGGAAGTTGTCCCTAGTCTCTGGGTCTTCCAGTGTGGCTTGGTGGAAGG  299
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AAGGAAGTTGTCCCTAGTCTCTGGGTCTTCCAGTGTGGC-TGGTGGAAGG  280

seq1  AGGGCGGCATAGGGACTTATCTTCTTTTCTACACTCTGCTCTGGCTTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGGCATAGGGACTTATCTTCTTTTCTACACTCTGCTCTGGCTTTGA  330

seq1  GAGGCTCTGCCCCTTACGCAAAGCTCTTCATATCATCACAACTGCTTCCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTCTGCCCCTTACGCAAAGCTCTTCATATCATCACAACTGCTTCCT  380

seq1  CAGGAGAAGAGAACCAGTGTGACAGAATCCACAATAAACACAAAAGGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAAGAGAACCAGTGTGACAGAATCCACAATAAACACAAAAGGTCT  430

seq1  TGGCTCTTGCCTAGTTGTGAGCTGTTAGTGGGATCTTCCAGCTTACTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTTGCCTAGTTGTGAGCTGTTAGTGGGATCTTCCAGCTTACTCCC  480

seq1  ATAGGTCTGCTGGAATCCAGTACTGGCTGGTCACTCCTTGTACTCAGTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGTCTGCTGGAATCCAGTACTGGCTGGTCACTCCTTGTACTCAGTGT  530

seq1  GGGATGGGGGCCTGTCAGGACTGGCACTGGCCTGGGTTCTGGAGACTTCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGGGGGCCTGTCAGGACTGGCACTGGCCTGGGTTCTGGAGACTTCC  580

seq1  CACTGGTTCTTGCTCTGAGAAACTCTAGTACTAGAGTTTGTCATTCGGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTTCTTGCTCTGAGAAACTCTAGTACTAGAGTTTGTCATTCGGTG  630

seq1  CATATATGCTGTGAGTCTCAGCTGAGCACATGCATGCCTTCTGCTCTTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATATGCTGTGAGTCTCAGCTGAGCACATGCATGCCTTCTGCTCTTGT  680

seq1  GGTGTGCTTAGTCAGCGTTAGAACAATTAGGAACAGTGACACCCACCTCC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGCTTAGTCAGCGTTAGAACAATTAGGAACAGTGACACCCACCTCC  730

seq1  CACACGTGTGTGCACACCATGAGGTTGATGAGGCGAGCTGGGGAATATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACGTGTGTGCACACCATGAGGTTGATGAGGCGAGCTGGGGAATATTT  780

seq1  GACCAATGCTCTTATGTACCAGGTGTTTTACATATGTGGCTGTATGTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAATGCTCTTATGTACCAGGTGTTTTACATATGTGGCTGTATGTATC  830

seq1  CTTAGCACATTTACTGTCTTATAGAGTGTTTCCTGTTGTCCAAGAAAGAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCACATTTACTGTCTTATAGAGTGTTTCCTGTTGTCCAAGAAAGAA  880

seq1  ACTGAGGTAGAAAGGCCAAATGGCTTTCTTTTTCTTTTGCCCATGCGGCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGGTAGAAAGGCCAAATGGCTTTCTTTTTCTTTTGCCCATGCGGCA  930

seq1  AGCAGTGATCTTTCTCAATATATTGTAGAACCTTCCTTCTCAAGGCTTCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGATCTTTCTCAATATATTGTAGAACCTTCCTTCTCAAGGCTTCA  980

seq1  ACACCACAGGATCCCCTAGCCATTGCCAGGGTCCAAATTAAAATCCAGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCACAGGATCCCCTAGCCATTGCCAGGGTCCAAATTAAAATCCAGCA  1030

seq1  CTTCCAAGGTGGCATATTAAAGCCAGTTTAGAAGTACTGATGGTCTAGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAAGGTGGCATATTAAAGCCAGTTTAGAAGTACTGATGGTCTAGGG  1080

seq1  GGAGATGGAAGTGCTGGGATGGAATTC  1126
      |||||||||||||||||||||||||||
seq2  GGAGATGGAAGTGCTGGGATGGAATTC  1107