BAC Information

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BAC

Clone NameB6Ng01-059B04
Chromosome12 (Build37)
Map Location 92,057,670 - 92,207,749
singlet/doubletdoublet
Overlap geneLOC100039295, 4930544I03Rik
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2
Downstream gene4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-059B04.bB6Ng01-059B04.g
ACCDH880470DH880471
length1,0181,086
definitionDH880470|Mus musculus domesticus DNA, BAC clone: B6Ng01-059B04, 5' end.DH880471|Mus musculus domesticus DNA, BAC clone: B6Ng01-059B04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,057,670 - 92,058,690)(92,206,639 - 92,207,749)
sequence
gaattcacaaagcaaaaaaaaaaaattacagtattttcaagctgcaactt
tttaaaaaacaggagtagtttaacaaacaaggcagtcgagtgtgggccta
taagaggaccatttaggaagtggaggcagaaagatcagtagctcaagtac
acttagctatgtagagaatctaaagctatttttctcaaaataaataaata
ctgttatagtaagtcatggcaactcatacatttaaaaaattaggaagtct
tagaacaatggcttagtaaaaagtagtaattatcagttatgaaataggta
atatgaatagtataacaaatttgtttaacttggttcttcctctgcaatag
gaaagatgaactgggagggggaggggaagtatcttgcaaaggaggtaaat
tgtctcttcctaaagacaaggcaaggagctctcgctgagagcagagaaaa
ctcccgaaaaccatcaaagcctgaaatattcaggaaagcatttgaattga
ttgcttgaggtgagacttggaaagtcatttcctgtctcatctcttcttag
aaagagcggaggacggctcaacagtgtgatctcaatcacgtcaagagacg
tagagagagccgtatatcaagtcccttgcttcctaagccttgccctcgag
gcttgctattcacatcacagttcttggattccagggtgcaccatccaaga
actgtgcaatcatggctaagtggtacccacgctgcagagagtctgtttta
cccttgctccggtttccctatggagtgttgtatgggaattacatcctgca
tagcaattgcattcagcccatcagatgattacagggcatctctcctagaa
aatcttcaatcctgatacacccaacactattacccaacttttgaggcaat
gaaagattcatgaagacaagataccacagaggtgggaaatgtaaaataca
catgcggagatgagttgttttattttcctttctcaatcacgtttattctg
tgcataaaaggtggcaag
gaattctttaaaaattgtaattctggaggctgaggagatggatcatctgt
taggagcacatactactttggcagagaacctgggtgcacacatcctggta
cccacgtcacactcacttataaataactctaattccaagaatctgatgtc
ttctgacctctgcaggtacctgaatatatggacaccagaacacataggca
cctgaatacataggcacacacacatgcacataataagtaaagaaaaacgc
tctttaaaaatgtgattctcaagttttctacaaactgcctcttggtagaa
aaaaaaaaattgcagttctagtctctacctgggaacttaattgtgtgtcc
tgtttctatgttcatgaggtaatatgaaggtagtatctagtttcaataca
agtgaatcaaacacatactattatttttactagtcttgaagaatgaactg
taatgataatatctcttttgtatctgtgcagtatttataaagagggttat
gcatttcctttaaatgggatggtgttagttcaggtgaataaactcattct
atcatgaactatgcatttaattcctactacagatcagcagggttatatgt
agtttcgtgtttaaccttcccaacaattcgctgaggtgggccctcttttc
ctcatttcacttgtaagagaatgaggaccacgaaggtttagggatgctct
gttttttcttgttcttgttgatgctgctgctaccagaatatctgaaagaa
aacatgagtttattttcagataatagtttaagatggtgtcatggatgatg
ataccttgggctctgtccatggtgatgggagcatacagcactgcctgtac
agcttaacagatagggaagcacagaactatgggccatgggcatcccataa
tataaaatatattcccataatgtatcccatagtataaaatatattagtat
ttcagagtcagtagtcttaactatctcagcctcaaatcaagtctcgttgg
tcgggaccgccgaactagaatagtctgaacagtgaaggtgcgccagaaac
tgacagctctggacgcaaagcacaaggccttgaggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_92057670_92058690
seq2: B6Ng01-059B04.b_47_1064

seq1  GAATTCACAAAGCAAAAAAAAAAAATTACAGTATTTTCAAGCTGCAACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAAAGCAAAAAAAAAAAATTACAGTATTTTCAAGCTGCAACTT  50

seq1  TTTAAAAAACAGGAGTAGTTTAACAAACAAGGCAGTCGAGTGTGGGCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAAAACAGGAGTAGTTTAACAAACAAGGCAGTCGAGTGTGGGCCTA  100

seq1  TAAGAGGACCATTTAGGAAGTGGAGGCAGAAAGATCAGTAGCTCAAGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGACCATTTAGGAAGTGGAGGCAGAAAGATCAGTAGCTCAAGTAC  150

seq1  ACTTAGCTATGTAGAGAATCTAAAGCTATTTTTCTCAAAATAAATAAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTATGTAGAGAATCTAAAGCTATTTTTCTCAAAATAAATAAATA  200

seq1  CTGTTATAGTAAGTCATGGCAACTCATACATTTAAAAAATTAGGAAGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATAGTAAGTCATGGCAACTCATACATTTAAAAAATTAGGAAGTCT  250

seq1  TAGAACAATGGCTTAGTAAAAAGTAGTAATTATCAGTTATGAAATAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAATGGCTTAGTAAAAAGTAGTAATTATCAGTTATGAAATAGGTA  300

seq1  ATATGAATAGTATAACAAATTTGTTTAACTTGGTTCTTCCTCTGCAATAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGAATAGTATAACAAATTTGTTTAACTTGGTTCTTCCTCTGCAATAG  350

seq1  GAAAGATGAACTGGGAGGGGGAGGGGAAGTATCTTGCAAAGGAGGTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGATGAACTGGGAGGGGGAGGGGAAGTATCTTGCAAAGGAGGTAAAT  400

seq1  TGTCTCTTCCTAAAGACAAGGCAAGGAGCTCTCGCTGAGAGCAGAGAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTTCCTAAAGACAAGGCAAGGAGCTCTCGCTGAGAGCAGAGAAAA  450

seq1  CTCCCGAAAACCATCAAAGCCTGAAATATTCAGGAAAGCATTTGAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCGAAAACCATCAAAGCCTGAAATATTCAGGAAAGCATTTGAATTGA  500

seq1  TTGCTTGAGGTGAGACTTGGAAAGTCATTTCCTGTCTCATCTCTTCTTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGAGGTGAGACTTGGAAAGTCATTTCCTGTCTCATCTCTTCTTAG  550

seq1  AAAGAGCGGAGGACGGCTCAACAGTGTGATCTCAATCACGTCAAGAGACG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGCGGAGGACGGCTCAACAGTGTGATCTCAATCACGTCAAGAGACG  600

seq1  TAGAGAGAGCCGTATATCAAGTCCCTTGCTTCCTAAGCCTTGCCCTCGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGCCGTATATCAAGTCCCTTGCTTCCTAAGCCTTGCCCTCGAG  650

seq1  GCTTGCTATTCACATCACAGTTCTTGGATTCCAGGGTGCACCATCCAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTATTCACATCACAGTTCTTGGATTCCAGGGTGCACCATCCAAGA  700

seq1  ACTGTGCAATCATGGCTAAGTGGTACCCACGCTGCAGAGAGTCTGTTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGCAATCATGGCTAAGTGGTACCCACGCTGCAGAGAGTCTGTTTTA  750

seq1  CCCTTGCTCCGGTTTCCCTATGGAGTGTTGTATGGGAATTACATCCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGCTCCGGTTTCCCTATGGAGTGTTGTATGGGAATTACATCCTGCA  800

seq1  TAGCAATTGCATTCAGCCCATCAGATGATTACA-GGCATCTCTCCTAGAA  849
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAGCAATTGCATTCAGCCCATCAGATGATTACAGGGCATCTCTCCTAGAA  850

seq1  AATCTTCAATCCTGATACACCCAACACTATTACCCAACTTTTGAGGCAAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCAATCCTGATACACCCAACACTATTACCCAACTTTTGAGGCAAT  900

seq1  GAAAGATTCATGAAGACAAAGATACCACAGAGGTGGGAAATGTAAAATAC  949
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GAAAGATTCATGAAGAC-AAGATACCACAGAGGTGGGAAATGTAAAATAC  949

seq1  ACATGCGGAGATGAGGTTGTTTTTAATTTCTTTCTCAATCACAGTTTATT  999
      |||||||||||||| ||||||||   || ||||||||||||| |||||||
seq2  ACATGCGGAGATGA-GTTGTTTTATTTTCCTTTCTCAATCAC-GTTTATT  997

seq1  CTGTGCATTAGAAGGTGGCAAG  1021
      ||||||| || |||||||||||
seq2  CTGTGCA-TAAAAGGTGGCAAG  1018

seq1: chr12_92206639_92207749
seq2: B6Ng01-059B04.g_67_1152 (reverse)

seq1  GCCTCAGCGCCTCTGTGCTTCTGCCTGTTCCAGAAGCTGTCAGGTTCTCT  50
      ||||||  |||| ||||||| |||    ||||| |||||||||  | |||
seq2  GCCTCAAGGCCT-TGTGCTT-TGC---GTCCAG-AGCTGTCAG--TTTCT  42

seq1  GGCGCACCCTCTCACCTGTTCAGACTAATTTCCTAAGTTCGGCGGGTCCC  100
      |||||||| ||    |||||||||||| | |    |||||||| ||||||
seq2  GGCGCACCTTC---ACTGTTCAGACTATTCT----AGTTCGGC-GGTCCC  84

seq1  GGACCAACGAGACTTTGGATTTTGAAGGCTTGAGATAGTTAAGACTACTG  150
       ||||||||||||||  |||||   |||| ||||||||||||||||||| 
seq2  -GACCAACGAGACTT--GATTT--GAGGC-TGAGATAGTTAAGACTACT-  127

seq1  GACTTCTTGAAATACTAAATATATTTTATACTATGGGATACATTATGGGA  200
      ||||   ||||||||| |||||||||||||||||||||||||||||||||
seq2  GACT--CTGAAATACT-AATATATTTTATACTATGGGATACATTATGGGA  174

seq1  ATATATTTTATATTATGGGATGCCCATGGCCCATAGTTCTGTGCTTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTTATATTATGGGATGCCCATGGCCCATAGTTCTGTGCTTCCCT  224

seq1  ATCTGTTAAGCTGTACAGGCAGTGCTGTATGCTCCCATCACCATGGACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTAAGCTGTACAGGCAGTGCTGTATGCTCCCATCACCATGGACAG  274

seq1  AG-CCAAGGTATCATCATCCATGACACCATCTTAAACTATTATCTGAAAA  349
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAAGGTATCATCATCCATGACACCATCTTAAACTATTATCTGAAAA  324

seq1  TAAACTCATGTTTTCTTTCAGATATTCTGGTAGCAGCAGCATCAACAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACTCATGTTTTCTTTCAGATATTCTGGTAGCAGCAGCATCAACAAGA  374

seq1  ACAAGAAAAAACAGAGCATCCCTAAACCTTCGTGGTCCTCATTCTCTTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAAAAAACAGAGCATCCCTAAACCTTCGTGGTCCTCATTCTCTTAC  424

seq1  AAGTGAAATGAGGAAAAGAGGGCCCACCTCAGCGAATTGTTGGGAAGGTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAAATGAGGAAAAGAGGGCCCACCTCAGCGAATTGTTGGGAAGGTT  474

seq1  AAACACGAAACTACATATAACCCTGCTGATCTGTAGTAGGAATTAAATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACGAAACTACATATAACCCTGCTGATCTGTAGTAGGAATTAAATGC  524

seq1  ATAGTTCATGATAGAATGAGTTTATTCACCTGAACTAACACCATCCCATT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATGATAGAATGAGTTTATTCACCTGAACTAACACCATCCCATT  574

seq1  TAAAGGAAATGCATAACCCTCTTTATAAATACTGCACAGATACAAAAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAATGCATAACCCTCTTTATAAATACTGCACAGATACAAAAGAG  624

seq1  ATATTATCATTACAGTTCATTCTTCAAGACTAGTAAAAATAATAGTATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTATCATTACAGTTCATTCTTCAAGACTAGTAAAAATAATAGTATGT  674

seq1  GTTTGATTCACTTGTATTGAAACTAGATACTACCTTCATATTACCTCATG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCACTTGTATTGAAACTAGATACTACCTTCATATTACCTCATG  724

seq1  AACATAGAAACAGGACACACAATTAAGTTCCCAGGTAGAGACTAGAACTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGAAACAGGACACACAATTAAGTTCCCAGGTAGAGACTAGAACTG  774

seq1  CAATTTTTTTTTTTCTACCAAGAGGCAGTTTGTAGAAAACTTGAGAATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTTTTTTTTCTACCAAGAGGCAGTTTGTAGAAAACTTGAGAATCA  824

seq1  CATTTTTAAAGAGCGTTTTTCTTTACTTATTATGTGCATGTGTGTGTGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAAAGAGCGTTTTTCTTTACTTATTATGTGCATGTGTGTGTGCC  874

seq1  TATGTATTCAGGTGCCTATGTGTTCTGGTGTCCATATATTCAGGTACCTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTCAGGTGCCTATGTGTTCTGGTGTCCATATATTCAGGTACCTG  924

seq1  CAGAGGTCAGAAGACATCAGATTCTTGGAATTAGAGTTATTTATAAGTGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCAGAAGACATCAGATTCTTGGAATTAGAGTTATTTATAAGTGA  974

seq1  GTGTGACGTGGGTACCAGGATGTGTGCACCCAGGTTCTCTGCCAAAGTAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGACGTGGGTACCAGGATGTGTGCACCCAGGTTCTCTGCCAAAGTAG  1024

seq1  TATGTGCTCCTAACAGATGATCCATCTCCTCAGCCTCCAGAATTACAATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTCCTAACAGATGATCCATCTCCTCAGCCTCCAGAATTACAATT  1074

seq1  TTTAAAGAATTC  1111
      ||||||||||||
seq2  TTTAAAGAATTC  1086